Wall clock time and date at job start Mon Mar 30 2020 01:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.69892 * 2 1 4 4 C 1.53194 * 109.58431 * 120.35143 * 2 1 3 5 5 H 1.08996 * 109.50065 * 54.47126 * 4 2 1 6 6 N 1.46502 * 109.50033 * 294.37556 * 4 2 1 7 7 C 1.34771 * 120.00171 * 155.00530 * 6 4 2 8 8 O 1.21284 * 120.00044 * 359.97438 * 7 6 4 9 9 C 1.50701 * 119.99881 * 180.02562 * 7 6 4 10 10 C 1.50705 * 109.46749 * 179.97438 * 9 7 6 11 11 N 1.34783 * 119.99420 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00434 * 359.97438 * 10 9 7 13 13 C 1.53048 * 109.31084 * 174.42474 * 4 2 1 14 14 C 1.53035 * 109.53690 * 298.63348 * 13 4 2 15 15 C 1.53197 * 109.31133 * 61.36803 * 14 13 4 16 16 N 1.46917 * 109.58848 * 239.64249 * 2 1 3 17 17 C 1.36936 * 120.63111 * 6.62431 * 16 2 1 18 18 H 1.08002 * 119.99906 * 331.54600 * 17 16 2 19 19 C 1.38820 * 119.99973 * 151.54351 * 17 16 2 20 20 N 1.31622 * 119.99869 * 160.53454 * 19 17 16 21 21 Si 1.86803 * 119.99832 * 340.53229 * 19 17 16 22 22 H 1.48495 * 109.46938 * 94.84410 * 21 19 17 23 23 H 1.48498 * 109.46531 * 214.84263 * 21 19 17 24 24 H 1.48498 * 109.47185 * 334.84005 * 21 19 17 25 25 H 1.09001 * 109.47331 * 180.35789 * 1 2 3 26 26 H 1.09000 * 109.47365 * 300.35944 * 1 2 3 27 27 H 1.08998 * 109.47416 * 60.35768 * 1 2 3 28 28 H 0.97004 * 119.99816 * 334.99907 * 6 4 2 29 29 H 1.08995 * 109.47174 * 299.98995 * 9 7 6 30 30 H 1.08999 * 109.47304 * 59.99749 * 9 7 6 31 31 H 0.96993 * 120.00552 * 359.97438 * 11 10 9 32 32 H 0.97004 * 119.99306 * 179.97438 * 11 10 9 33 33 H 1.08999 * 109.46148 * 58.65835 * 13 4 2 34 34 H 1.09003 * 109.45657 * 178.62837 * 13 4 2 35 35 H 1.09005 * 109.50047 * 301.41526 * 14 13 4 36 36 H 1.08999 * 109.50083 * 181.31681 * 14 13 4 37 37 H 1.09005 * 109.58416 * 185.58067 * 15 14 13 38 38 H 1.08996 * 109.58528 * 65.15169 * 15 14 13 39 39 H 0.96997 * 119.99773 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 1 1.6029 -1.7252 1.2915 6 7 1.6704 0.0268 2.4436 7 6 1.5472 -0.6047 3.6278 8 8 1.7446 -1.7991 3.7016 9 6 1.1628 0.1731 4.8600 10 6 1.0933 -0.7599 6.0415 11 7 0.7660 -0.2826 7.2587 12 8 1.3318 -1.9403 5.8970 13 6 3.5675 -0.8479 1.1703 14 6 3.9569 -1.6657 -0.0632 15 6 3.4651 -0.9469 -1.3236 16 7 2.0225 -0.6995 -1.1944 17 6 1.1538 -1.1128 -2.1688 18 1 0.1334 -1.3583 -1.9139 19 6 1.5846 -1.2160 -3.4845 20 7 0.9111 -1.9539 -4.3415 21 14 3.1200 -0.3077 -4.0385 22 1 4.2909 -1.2169 -3.9529 23 1 2.9472 0.1461 -5.4418 24 1 3.3422 0.8697 -3.1613 25 1 -0.3634 -1.0276 0.0064 26 1 -0.3634 0.5194 0.8867 27 1 -0.3634 0.5082 -0.8931 28 1 1.5122 0.9820 2.3845 29 1 1.9086 0.9450 5.0498 30 1 0.1891 0.6383 4.7071 31 1 0.5756 0.6614 7.3744 32 1 0.7208 -0.8832 8.0191 33 1 4.0061 0.1475 1.0995 34 1 3.9377 -1.3449 2.0670 35 1 3.4983 -2.6528 -0.0050 36 1 5.0412 -1.7696 -0.1035 37 1 3.6519 -1.5718 -2.1970 38 1 3.9904 0.0020 -1.4315 39 1 1.2119 -2.0258 -5.2608 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278506428.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:19 Heat of formation + Delta-G solvation = -83.321604 kcal Electronic energy + Delta-G solvation = -21442.245323 eV Core-core repulsion = 18191.076726 eV Total energy + Delta-G solvation = -3251.168598 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.34077 -40.16210 -38.93073 -35.85933 -34.62986 -34.36483 -33.49361 -32.18293 -30.52350 -27.88661 -26.70013 -24.46791 -22.43012 -22.31321 -21.34710 -20.82474 -18.57022 -18.35470 -18.09214 -17.38233 -16.93926 -16.77721 -16.57149 -16.02415 -15.49852 -15.26658 -15.01191 -14.82011 -14.59707 -14.36857 -14.19887 -13.64187 -13.47399 -13.00334 -12.90939 -12.80164 -12.52854 -12.42865 -12.01997 -11.86441 -11.62833 -11.42881 -11.28771 -11.16612 -10.73621 -10.54037 -10.43941 -9.93398 -8.89349 -8.11318 -5.45592 1.34571 1.43809 1.53494 1.72404 1.84319 2.05247 2.46519 2.82922 3.09689 3.34366 3.70419 3.88991 3.97092 4.07710 4.24010 4.25304 4.40971 4.48293 4.52733 4.55283 4.67547 4.74363 4.89224 4.92611 5.03115 5.03400 5.18203 5.26570 5.39450 5.48990 5.66030 5.91982 5.99904 6.20825 6.58117 6.74166 6.94017 7.43614 7.56258 7.66360 8.04786 9.08104 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039731 B = 0.004496 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.562881 B = 6226.952462 C = 6460.265180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.168 3.832 3 H 0.064 0.936 4 C 0.144 3.856 5 H 0.044 0.956 6 N -0.706 5.706 7 C 0.500 3.500 8 O -0.563 6.563 9 C -0.152 4.152 10 C 0.505 3.495 11 N -0.836 5.836 12 O -0.572 6.572 13 C -0.110 4.110 14 C -0.128 4.128 15 C 0.119 3.881 16 N -0.614 5.614 17 C -0.242 4.242 18 H 0.060 0.940 19 C -0.038 4.038 20 N -0.962 5.962 21 Si 0.947 3.053 22 H -0.282 1.282 23 H -0.315 1.315 24 H -0.249 1.249 25 H 0.025 0.975 26 H 0.085 0.915 27 H 0.049 0.951 28 H 0.418 0.582 29 H 0.168 0.832 30 H 0.165 0.835 31 H 0.421 0.579 32 H 0.405 0.595 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.039 0.961 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.383 14.326 21.970 26.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.063 3.937 3 H 0.081 0.919 4 C 0.036 3.964 5 H 0.062 0.938 6 N -0.360 5.360 7 C 0.286 3.714 8 O -0.439 6.439 9 C -0.194 4.194 10 C 0.289 3.711 11 N -0.402 5.402 12 O -0.450 6.450 13 C -0.149 4.149 14 C -0.168 4.168 15 C -0.006 4.006 16 N -0.339 5.339 17 C -0.372 4.372 18 H 0.078 0.922 19 C -0.232 4.232 20 N -0.608 5.608 21 Si 0.776 3.224 22 H -0.209 1.209 23 H -0.244 1.244 24 H -0.173 1.173 25 H 0.044 0.956 26 H 0.104 0.896 27 H 0.068 0.932 28 H 0.256 0.744 29 H 0.185 0.815 30 H 0.182 0.818 31 H 0.253 0.747 32 H 0.236 0.764 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.668 12.730 21.612 25.224 hybrid contribution 0.253 0.132 -0.678 0.736 sum 2.922 12.862 20.934 24.743 Atomic orbital electron populations 1.21750 0.94632 1.00550 1.01721 1.20813 0.94242 0.94272 0.84417 0.91859 1.21213 0.94924 0.95413 0.84806 0.93784 1.45789 1.70698 1.12784 1.06715 1.20893 0.77111 0.87891 0.85494 1.90868 1.49992 1.17423 1.85639 1.21659 1.09531 0.99066 0.89164 1.20630 0.76073 0.88468 0.85882 1.43665 1.72504 1.14937 1.09134 1.90919 1.49284 1.19607 1.85154 1.21702 0.95311 1.00918 0.96932 1.21929 1.00982 0.98703 0.95184 1.21470 0.84367 0.97776 0.96963 1.44496 1.02450 1.66738 1.20203 1.18858 0.94898 1.36658 0.86771 0.92220 1.25929 1.01261 0.99949 0.96056 1.69974 1.44037 1.41631 1.05197 0.85893 0.80012 0.80505 0.75988 1.20944 1.24401 1.17272 0.95560 0.89592 0.93212 0.74433 0.81473 0.81793 0.74732 0.76413 0.89808 0.92854 0.94167 0.89753 0.93534 0.93578 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 7.82 71.98 0.56 -3.92 16 2 C 0.17 5.97 3.03 44.98 0.14 6.11 16 3 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 4 C 0.14 4.72 2.00 45.07 0.09 4.81 16 5 H 0.04 1.88 7.58 -2.39 -0.02 1.86 16 6 N -0.71 -15.97 4.59 -442.15 -2.03 -18.00 16 7 C 0.50 12.99 7.79 87.66 0.68 13.68 16 8 O -0.56 -22.77 13.84 20.40 0.28 -22.48 16 9 C -0.15 -1.85 6.19 29.10 0.18 -1.67 16 10 C 0.51 10.05 8.09 87.66 0.71 10.76 16 11 N -0.84 -7.28 8.87 -173.52 -1.54 -8.82 16 12 O -0.57 -20.33 15.02 20.41 0.31 -20.03 16 13 C -0.11 -3.44 5.46 30.62 0.17 -3.28 16 14 C -0.13 -4.62 6.08 30.67 0.19 -4.43 16 15 C 0.12 4.99 4.19 86.36 0.36 5.35 16 16 N -0.61 -28.16 2.76 -675.22 -1.86 -30.02 16 17 C -0.24 -13.55 9.06 84.04 0.76 -12.79 16 18 H 0.06 3.64 6.37 -2.91 -0.02 3.62 16 19 C -0.04 -2.21 5.24 84.86 0.45 -1.77 16 20 N -0.96 -61.17 13.97 21.65 0.30 -60.86 16 21 Si 0.95 46.14 24.35 68.60 1.67 47.81 16 22 H -0.28 -13.29 6.72 99.48 0.67 -12.62 16 23 H -0.31 -15.73 7.11 99.48 0.71 -15.02 16 24 H -0.25 -11.13 6.44 99.48 0.64 -10.49 16 25 H 0.03 1.06 7.45 -2.39 -0.02 1.04 16 26 H 0.09 2.15 7.80 -2.39 -0.02 2.13 16 27 H 0.05 1.88 7.61 -2.39 -0.02 1.87 16 28 H 0.42 5.59 8.61 -92.71 -0.80 4.79 16 29 H 0.17 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.16 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.42 -0.12 8.83 -92.71 -0.82 -0.94 16 32 H 0.40 3.54 8.93 -92.71 -0.83 2.71 16 33 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.05 2.20 4.61 -2.38 -0.01 2.18 16 38 H 0.05 1.78 6.95 -2.39 -0.02 1.76 16 39 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -90.61 308.66 -0.04 -90.65 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -1.45 Total: 8.90 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 4.28 Total: 12.85 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -5.13 Total: -117.70 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: 0.59 Total: -42.51 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.67 Total: 47.81 kcal Total: -90.61 -0.04 -90.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278506428.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.326 kcal (2) G-P(sol) polarization free energy of solvation -90.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds