Wall clock time and date at job start Mon Mar 30 2020 01:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09008 * 109.70202 * 2 1 4 4 C 1.53193 * 109.58841 * 239.64098 * 2 1 3 5 5 H 1.09004 * 109.49297 * 65.59634 * 4 2 1 6 6 N 1.46497 * 109.49758 * 305.52859 * 4 2 1 7 7 C 1.34777 * 119.99831 * 155.06196 * 6 4 2 8 8 O 1.21278 * 119.99867 * 0.02562 * 7 6 4 9 9 C 1.50701 * 120.00094 * 179.97438 * 7 6 4 10 10 C 1.50697 * 109.47268 * 180.02562 * 9 7 6 11 11 N 1.34776 * 120.00171 * 180.28062 * 10 9 7 12 12 O 1.21283 * 119.99919 * 359.97438 * 10 9 7 13 13 C 1.53044 * 109.34074 * 185.56016 * 4 2 1 14 14 C 1.53043 * 109.53534 * 61.38280 * 13 4 2 15 15 C 1.53189 * 109.31230 * 298.63312 * 14 13 4 16 16 N 1.46925 * 108.77509 * 54.63732 * 15 14 13 17 17 C 1.36939 * 120.62818 * 126.41439 * 16 15 14 18 18 H 1.08005 * 119.99772 * 208.57132 * 17 16 15 19 19 C 1.38810 * 120.00472 * 28.56596 * 17 16 15 20 20 N 1.31620 * 119.99780 * 14.43410 * 19 17 16 21 21 Si 1.86798 * 120.00117 * 194.42727 * 19 17 16 22 22 H 1.48497 * 109.46898 * 90.00383 * 21 19 17 23 23 H 1.48501 * 109.46961 * 210.00049 * 21 19 17 24 24 H 1.48499 * 109.47321 * 330.00248 * 21 19 17 25 25 H 1.08999 * 109.47029 * 180.36026 * 1 2 3 26 26 H 1.08996 * 109.47107 * 300.35746 * 1 2 3 27 27 H 1.08998 * 109.47422 * 60.36117 * 1 2 3 28 28 H 0.96992 * 119.99985 * 335.06447 * 6 4 2 29 29 H 1.09005 * 109.46630 * 60.00054 * 9 7 6 30 30 H 1.09004 * 109.47058 * 300.00392 * 9 7 6 31 31 H 0.96992 * 119.99994 * 179.72876 * 11 10 9 32 32 H 0.97008 * 119.99279 * 359.71371 * 11 10 9 33 33 H 1.08998 * 109.46046 * 181.40598 * 13 4 2 34 34 H 1.09006 * 109.45657 * 301.36358 * 13 4 2 35 35 H 1.08991 * 109.49571 * 58.58673 * 14 13 4 36 36 H 1.09006 * 109.49172 * 178.68413 * 14 13 4 37 37 H 1.09001 * 109.58863 * 174.42762 * 15 14 13 38 38 H 1.09006 * 109.59120 * 294.70803 * 15 14 13 39 39 H 0.97003 * 120.00132 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7295 -1.2454 5 1 1.7655 -0.1671 -2.1368 6 7 1.4514 -2.0680 -1.3070 7 6 1.3296 -2.6970 -2.4927 8 8 1.7106 -2.1551 -3.5086 9 6 0.7210 -4.0742 -2.5561 10 6 0.7017 -4.5496 -3.9860 11 7 0.1933 -5.7610 -4.2867 12 8 1.1387 -3.8397 -4.8670 13 6 3.5676 -0.8480 -1.1709 14 6 3.9576 -1.6660 0.0624 15 6 3.4664 -0.9474 1.3230 16 7 2.0238 -0.7001 1.1945 17 6 1.1555 -1.1134 2.1694 18 1 0.1356 -1.3611 1.9146 19 6 1.5861 -1.2142 3.4852 20 7 2.7194 -0.6538 3.8515 21 14 0.5572 -2.1449 4.7360 22 1 0.9696 -3.5714 4.7529 23 1 0.7621 -1.5544 6.0831 24 1 -0.8778 -2.0488 4.3664 25 1 -0.3633 -1.0276 0.0065 26 1 -0.3633 0.5194 0.8867 27 1 -0.3634 0.5082 -0.8932 28 1 1.1470 -2.5015 -0.4945 29 1 -0.2980 -4.0392 -2.1707 30 1 1.3142 -4.7617 -1.9530 31 1 0.1773 -6.0653 -5.2075 32 1 -0.1564 -6.3286 -3.5820 33 1 3.9374 -1.3446 -2.0679 34 1 4.0061 0.1474 -1.1001 35 1 3.4990 -2.6530 0.0042 36 1 5.0420 -1.7698 0.1020 37 1 3.6536 -1.5723 2.1962 38 1 3.9935 0.0005 1.4323 39 1 3.0201 -0.7239 4.7710 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278506430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:24 Heat of formation + Delta-G solvation = -81.117258 kcal Electronic energy + Delta-G solvation = -21818.318106 eV Core-core repulsion = 18567.245096 eV Total energy + Delta-G solvation = -3251.073010 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.33647 -40.12485 -38.68401 -35.51832 -34.59567 -33.96460 -33.36766 -31.76384 -30.29843 -27.78225 -26.79205 -23.98391 -22.67447 -22.30199 -21.06657 -20.21317 -18.53912 -18.28697 -17.95105 -17.05225 -16.91333 -16.78138 -16.23994 -15.73345 -15.53220 -15.10908 -14.75375 -14.58539 -14.46670 -14.25061 -14.13962 -13.49334 -12.99454 -12.90933 -12.76633 -12.64273 -12.41483 -12.27768 -12.12506 -11.86205 -11.63770 -11.31723 -11.15483 -11.00212 -10.53663 -10.45132 -10.41270 -9.80084 -8.58058 -7.76112 -5.23228 1.54609 1.56398 1.63818 1.72334 1.87598 2.18115 2.58445 2.90073 3.40121 3.62756 3.74007 4.03904 4.11171 4.23970 4.26610 4.42466 4.45738 4.54154 4.62422 4.69999 4.83578 4.98813 5.02462 5.08218 5.17195 5.27322 5.38107 5.49859 5.60199 5.74565 5.79447 5.86012 6.00707 6.48632 6.56574 6.81573 7.23881 7.43678 7.56404 7.93911 8.47699 9.30424 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021947 B = 0.005666 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.473457 B = 4940.399407 C = 5498.611264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.157 3.843 3 H 0.025 0.975 4 C 0.146 3.854 5 H 0.070 0.930 6 N -0.698 5.698 7 C 0.502 3.498 8 O -0.561 6.561 9 C -0.159 4.159 10 C 0.512 3.488 11 N -0.836 5.836 12 O -0.566 6.566 13 C -0.116 4.116 14 C -0.124 4.124 15 C 0.178 3.822 16 N -0.595 5.595 17 C -0.244 4.244 18 H 0.086 0.914 19 C -0.053 4.053 20 N -0.940 5.940 21 Si 0.962 3.038 22 H -0.286 1.286 23 H -0.308 1.308 24 H -0.265 1.265 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.411 0.589 29 H 0.158 0.842 30 H 0.153 0.847 31 H 0.406 0.594 32 H 0.419 0.581 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.061 0.939 38 H -0.011 1.011 39 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.246 -10.728 -9.124 15.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 H 0.043 0.957 4 C 0.039 3.961 5 H 0.088 0.912 6 N -0.351 5.351 7 C 0.288 3.712 8 O -0.439 6.439 9 C -0.201 4.201 10 C 0.296 3.704 11 N -0.402 5.402 12 O -0.444 6.444 13 C -0.155 4.155 14 C -0.163 4.163 15 C 0.052 3.948 16 N -0.319 5.319 17 C -0.374 4.374 18 H 0.103 0.897 19 C -0.247 4.247 20 N -0.586 5.586 21 Si 0.792 3.208 22 H -0.212 1.212 23 H -0.236 1.236 24 H -0.190 1.190 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.248 0.752 29 H 0.175 0.825 30 H 0.171 0.829 31 H 0.238 0.762 32 H 0.251 0.749 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.007 0.993 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.621 -9.741 -10.114 15.126 hybrid contribution -0.219 -0.536 1.363 1.480 sum -5.840 -10.276 -8.752 14.707 Atomic orbital electron populations 1.21689 0.93939 1.02116 1.00654 1.20841 0.94719 0.93180 0.86260 0.95736 1.21200 0.92596 0.84121 0.98205 0.91155 1.45888 1.62064 1.17916 1.09200 1.20677 0.79171 0.88309 0.83038 1.90806 1.49979 1.67806 1.35265 1.21648 1.07367 0.95057 0.96068 1.20425 0.77045 0.82045 0.90923 1.43645 1.64560 1.17918 1.14090 1.90887 1.46932 1.55990 1.50541 1.21716 0.95963 1.00239 0.97575 1.21940 0.99550 0.99229 0.95549 1.20606 0.83333 0.95715 0.95119 1.44365 1.02900 1.65302 1.19300 1.19567 0.95155 1.36140 0.86511 0.89677 1.25800 0.98811 1.01238 0.98891 1.70187 1.24595 1.47155 1.16711 0.85333 0.79150 0.78213 0.78110 1.21242 1.23611 1.18970 0.91750 0.93426 0.92152 0.75223 0.82454 0.82905 0.76232 0.74873 0.93196 0.92092 0.92272 0.92360 0.92075 0.99257 0.94598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 7.72 71.98 0.56 -3.67 16 2 C 0.16 5.97 3.20 44.96 0.14 6.11 16 3 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 4 C 0.15 5.06 2.32 45.07 0.10 5.16 16 5 H 0.07 2.55 7.58 -2.38 -0.02 2.53 16 6 N -0.70 -21.02 3.47 -442.16 -1.53 -22.55 16 7 C 0.50 15.30 7.79 87.66 0.68 15.98 16 8 O -0.56 -23.08 13.84 20.42 0.28 -22.79 16 9 C -0.16 -2.94 6.19 29.10 0.18 -2.76 16 10 C 0.51 11.86 8.09 87.66 0.71 12.57 16 11 N -0.84 -9.94 8.87 -173.53 -1.54 -11.48 16 12 O -0.57 -20.88 15.02 20.40 0.31 -20.58 16 13 C -0.12 -4.12 5.58 30.62 0.17 -3.94 16 14 C -0.12 -4.55 5.93 30.67 0.18 -4.37 16 15 C 0.18 8.11 5.29 86.36 0.46 8.57 16 16 N -0.59 -26.46 2.65 -675.05 -1.79 -28.25 16 17 C -0.24 -11.61 8.63 84.03 0.73 -10.88 16 18 H 0.09 3.77 6.18 -2.91 -0.02 3.75 16 19 C -0.05 -2.69 4.98 84.86 0.42 -2.26 16 20 N -0.94 -52.73 11.07 21.65 0.24 -52.49 16 21 Si 0.96 41.32 29.58 68.60 2.03 43.35 16 22 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.31 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 25 H 0.06 2.00 6.38 -2.39 -0.02 1.98 16 26 H 0.05 1.73 7.66 -2.39 -0.02 1.71 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.41 11.76 7.77 -92.71 -0.72 11.04 16 29 H 0.16 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.15 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.41 4.43 8.93 -92.71 -0.83 3.61 16 32 H 0.42 1.60 8.83 -92.70 -0.82 0.78 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.06 2.11 7.53 -2.39 -0.02 2.09 16 36 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 37 H 0.06 3.15 6.01 -2.39 -0.01 3.14 16 38 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 39 H 0.24 13.57 8.31 -92.71 -0.77 12.80 16 Total: -1.00 -74.79 311.84 1.05 -73.73 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -1.27 Total: 20.55 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: 4.33 Total: 20.50 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -4.62 Total: -114.77 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: 0.59 Total: -43.37 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -74.79 1.05 -73.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278506430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.383 kcal (2) G-P(sol) polarization free energy of solvation -74.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds