Wall clock time and date at job start Mon Mar 30 2020 00:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99889 * 2 1 4 4 H 1.48506 * 109.47059 * 240.00028 * 3 2 1 5 5 H 1.48495 * 109.47248 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47150 * 120.00274 * 3 2 1 7 7 C 1.37877 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99944 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00008 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47092 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47093 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47192 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00249 * 179.97438 * 12 11 10 14 14 O 1.21586 * 119.99966 * 5.08183 * 13 12 11 15 15 N 1.34778 * 120.00084 * 185.08587 * 13 12 11 16 16 C 1.46215 * 118.62415 * 174.86896 * 15 13 12 17 17 C 1.53216 * 109.63037 * 116.29709 * 16 15 13 18 18 N 1.46915 * 108.93558 * 81.46636 * 17 16 15 19 19 C 1.33631 * 120.62258 * 287.97445 * 18 17 16 20 20 O 1.21281 * 119.76838 * 180.28817 * 19 18 17 21 21 C 1.51192 * 120.46155 * 0.30964 * 19 18 17 22 22 C 1.46155 * 118.73057 * 354.84200 * 15 13 12 23 23 H 0.96990 * 120.00206 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47014 * 60.00528 * 9 7 2 25 25 H 1.08992 * 109.47505 * 299.99999 * 9 7 2 26 26 H 1.08999 * 109.47602 * 60.00590 * 10 9 7 27 27 H 1.08999 * 109.47619 * 300.00368 * 10 9 7 28 28 H 1.08995 * 109.47002 * 60.00370 * 11 10 9 29 29 H 1.09002 * 109.47075 * 299.99946 * 11 10 9 30 30 H 0.97007 * 119.99887 * 0.02562 * 12 11 10 31 31 H 1.09004 * 109.63553 * 356.14080 * 16 15 13 32 32 H 1.09002 * 109.31113 * 236.24866 * 16 15 13 33 33 H 1.09001 * 109.57781 * 321.58891 * 17 16 15 34 34 H 1.09001 * 109.57326 * 201.33230 * 17 16 15 35 35 H 0.96997 * 119.68943 * 107.94982 * 18 17 16 36 36 H 1.09001 * 109.61624 * 190.97516 * 21 19 18 37 37 H 1.09004 * 109.60763 * 311.31658 * 21 19 18 38 38 H 1.09006 * 109.46111 * 123.67470 * 22 15 13 39 39 H 1.08996 * 109.46670 * 3.70982 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 7 2.4323 -6.1006 -0.0031 13 6 1.9831 -7.3713 -0.0032 14 8 0.7916 -7.5949 -0.0961 15 7 2.8547 -8.3942 0.0997 16 6 2.3288 -9.7540 0.2111 17 6 2.7597 -10.5740 -1.0094 18 7 4.1334 -11.0516 -0.8020 19 6 5.1651 -10.2045 -0.8629 20 8 6.2933 -10.6165 -0.6944 21 6 4.9357 -8.7360 -1.1399 22 6 4.2864 -8.1005 0.0950 23 1 -0.4850 0.8399 -0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6248 -2.5572 0.8896 26 1 2.8726 -3.6048 0.8877 27 1 2.8714 -3.6039 -0.8922 28 1 0.8533 -5.0442 -0.8922 29 1 0.8540 -5.0455 0.8878 30 1 3.3860 -5.9234 -0.0027 31 1 1.2404 -9.7228 0.2612 32 1 2.7195 -10.2185 1.1164 33 1 2.7209 -9.9490 -1.9016 34 1 2.0911 -11.4263 -1.1312 35 1 4.2931 -11.9907 -0.6188 36 1 5.8893 -8.2487 -1.3435 37 1 4.2768 -8.6247 -2.0011 38 1 4.7438 -8.5085 0.9964 39 1 4.4357 -7.0211 0.0689 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326743603.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:52 Heat of formation + Delta-G solvation = -66.359337 kcal Electronic energy + Delta-G solvation = -20448.981355 eV Core-core repulsion = 17198.548296 eV Total energy + Delta-G solvation = -3250.433058 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.97434 -39.61586 -36.83796 -35.49484 -34.93202 -33.30939 -31.90435 -31.21773 -28.86591 -26.57857 -25.11465 -23.77569 -22.56770 -20.69795 -20.42121 -19.66911 -18.41003 -17.51806 -17.04767 -16.64307 -16.13799 -15.81586 -15.11746 -14.72128 -14.52877 -14.40430 -14.17340 -13.91344 -13.24285 -13.15416 -12.75543 -12.53521 -12.30782 -12.05797 -11.87531 -11.78561 -11.74044 -10.89982 -10.73588 -10.63665 -10.23804 -10.09707 -9.89034 -9.71295 -9.47036 -9.15802 -9.08010 -8.63195 -8.38408 -6.03224 -4.06537 2.24703 2.50513 2.89072 3.16232 3.31107 3.36091 3.37803 3.75600 4.09768 4.43131 4.50779 4.58740 4.62964 4.70389 4.81424 4.89696 5.23723 5.32526 5.32974 5.49872 5.54122 5.64721 5.76933 6.13821 6.21798 6.37488 6.45521 6.58103 6.65246 6.83073 6.89701 6.98351 7.61518 7.74203 7.84035 7.91790 7.95332 8.36005 8.57883 8.99963 9.57749 11.08030 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.036170 B = 0.003111 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.936727 B = 8999.376432 C = 9638.981908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.121 4.121 11 C 0.133 3.867 12 N -0.741 5.741 13 C 0.699 3.301 14 O -0.587 6.587 15 N -0.635 5.635 16 C 0.108 3.892 17 C 0.090 3.910 18 N -0.725 5.725 19 C 0.519 3.481 20 O -0.550 6.550 21 C -0.159 4.159 22 C 0.120 3.880 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.393 0.607 31 H 0.113 0.887 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.401 0.599 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.223 -21.325 -1.247 22.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.159 4.159 11 C 0.010 3.990 12 N -0.398 5.398 13 C 0.401 3.599 14 O -0.465 6.465 15 N -0.374 5.374 16 C -0.017 4.017 17 C -0.035 4.035 18 N -0.378 5.378 19 C 0.306 3.694 20 O -0.428 6.428 21 C -0.201 4.201 22 C -0.005 4.005 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.037 0.963 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.230 0.770 31 H 0.131 0.869 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.237 0.763 36 H 0.130 0.870 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.727 -21.340 -1.246 22.410 hybrid contribution 0.928 0.672 0.029 1.146 sum 7.655 -20.668 -1.217 22.074 Atomic orbital electron populations 1.69951 1.06060 1.26834 1.50431 1.25026 0.94857 0.99295 0.95246 0.86642 0.79563 0.83088 0.78598 1.20237 1.21275 1.20238 1.21166 0.92956 0.90957 1.51125 0.92695 1.19015 0.93823 0.90760 0.97692 1.21898 0.99827 0.93333 1.00832 1.21555 0.91323 0.84167 1.01993 1.45678 1.10599 1.04536 1.78962 1.16045 0.85069 0.81017 0.77796 1.90911 1.14261 1.83716 1.57590 1.47094 1.05204 1.06221 1.78838 1.21844 1.02035 0.80438 0.97334 1.22251 0.82222 0.99970 0.99053 1.45988 1.07121 1.11968 1.72729 1.20551 0.84241 0.89054 0.75559 1.90769 1.22828 1.79134 1.50082 1.22465 1.04559 0.92501 1.00542 1.21374 0.80564 1.01257 0.97258 0.92848 0.96233 0.96251 0.92769 0.92743 0.91748 0.91923 0.76973 0.86916 0.90938 0.89899 0.88222 0.76319 0.87043 0.88440 0.90455 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 11 C 0.13 2.24 5.68 -4.04 -0.02 2.22 16 12 N -0.74 -10.01 5.45 -65.22 -0.36 -10.36 16 13 C 0.70 9.70 8.22 -86.92 -0.71 8.98 16 14 O -0.59 -10.38 15.57 5.29 0.08 -10.29 16 15 N -0.63 -6.22 2.77 -179.60 -0.50 -6.72 16 16 C 0.11 0.85 6.18 -4.08 -0.03 0.82 16 17 C 0.09 0.51 6.48 -3.70 -0.02 0.49 16 18 N -0.73 -4.88 5.30 -60.00 -0.32 -5.20 16 19 C 0.52 4.90 7.11 -11.25 -0.08 4.82 16 20 O -0.55 -7.46 17.91 5.56 0.10 -7.36 16 21 C -0.16 -1.19 5.60 -27.48 -0.15 -1.34 16 22 C 0.12 0.93 6.09 -4.07 -0.02 0.90 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.39 4.25 5.74 -40.82 -0.23 4.01 16 31 H 0.11 1.03 6.81 -51.93 -0.35 0.68 16 32 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 33 H 0.08 0.54 7.03 -51.93 -0.37 0.18 16 34 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.40 2.24 8.91 -40.82 -0.36 1.87 16 36 H 0.11 0.76 8.13 -51.93 -0.42 0.33 16 37 H 0.10 0.69 7.09 -51.93 -0.37 0.33 16 38 H 0.08 0.58 7.95 -51.93 -0.41 0.17 16 39 H 0.10 0.66 5.29 -51.93 -0.27 0.38 16 LS Contribution 319.40 15.07 4.81 4.81 Total: -1.00 -34.79 319.40 -7.91 -42.70 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -5.72 Total: 0.24 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -1.74 Total: 1.76 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.44 Total: -48.09 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.18 Total: -17.65 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.79 -7.91 -42.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326743603.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.656 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds