Wall clock time and date at job start Mon Mar 30 2020 00:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99889 * 2 1 4 4 H 1.48506 * 109.47059 * 240.00028 * 3 2 1 5 5 H 1.48495 * 109.47248 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47150 * 120.00274 * 3 2 1 7 7 C 1.37877 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99944 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00008 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47092 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47093 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47192 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00249 * 179.97438 * 12 11 10 14 14 O 1.21586 * 119.99966 * 5.08183 * 13 12 11 15 15 N 1.34778 * 120.00084 * 185.08587 * 13 12 11 16 16 C 1.46215 * 118.62415 * 174.86896 * 15 13 12 17 17 C 1.53216 * 109.63037 * 116.29709 * 16 15 13 18 18 N 1.46915 * 108.93558 * 81.46636 * 17 16 15 19 19 C 1.33631 * 120.62258 * 287.97445 * 18 17 16 20 20 O 1.21281 * 119.76838 * 180.28817 * 19 18 17 21 21 C 1.51192 * 120.46155 * 0.30964 * 19 18 17 22 22 C 1.46155 * 118.73057 * 354.84200 * 15 13 12 23 23 H 0.96990 * 120.00206 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47014 * 60.00528 * 9 7 2 25 25 H 1.08992 * 109.47505 * 299.99999 * 9 7 2 26 26 H 1.08999 * 109.47602 * 60.00590 * 10 9 7 27 27 H 1.08999 * 109.47619 * 300.00368 * 10 9 7 28 28 H 1.08995 * 109.47002 * 60.00370 * 11 10 9 29 29 H 1.09002 * 109.47075 * 299.99946 * 11 10 9 30 30 H 0.97007 * 119.99887 * 0.02562 * 12 11 10 31 31 H 1.09004 * 109.63553 * 356.14080 * 16 15 13 32 32 H 1.09002 * 109.31113 * 236.24866 * 16 15 13 33 33 H 1.09001 * 109.57781 * 321.58891 * 17 16 15 34 34 H 1.09001 * 109.57326 * 201.33230 * 17 16 15 35 35 H 0.96997 * 119.68943 * 107.94982 * 18 17 16 36 36 H 1.09001 * 109.61624 * 190.97516 * 21 19 18 37 37 H 1.09004 * 109.60763 * 311.31658 * 21 19 18 38 38 H 1.09006 * 109.46111 * 123.67470 * 22 15 13 39 39 H 1.08996 * 109.46670 * 3.70982 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 7 2.4323 -6.1006 -0.0031 13 6 1.9831 -7.3713 -0.0032 14 8 0.7916 -7.5949 -0.0961 15 7 2.8547 -8.3942 0.0997 16 6 2.3288 -9.7540 0.2111 17 6 2.7597 -10.5740 -1.0094 18 7 4.1334 -11.0516 -0.8020 19 6 5.1651 -10.2045 -0.8629 20 8 6.2933 -10.6165 -0.6944 21 6 4.9357 -8.7360 -1.1399 22 6 4.2864 -8.1005 0.0950 23 1 -0.4850 0.8399 -0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6248 -2.5572 0.8896 26 1 2.8726 -3.6048 0.8877 27 1 2.8714 -3.6039 -0.8922 28 1 0.8533 -5.0442 -0.8922 29 1 0.8540 -5.0455 0.8878 30 1 3.3860 -5.9234 -0.0027 31 1 1.2404 -9.7228 0.2612 32 1 2.7195 -10.2185 1.1164 33 1 2.7209 -9.9490 -1.9016 34 1 2.0911 -11.4263 -1.1312 35 1 4.2931 -11.9907 -0.6188 36 1 5.8893 -8.2487 -1.3435 37 1 4.2768 -8.6247 -2.0011 38 1 4.7438 -8.5085 0.9964 39 1 4.4357 -7.0211 0.0689 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326743603.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:51 Heat of formation + Delta-G solvation = -92.567655 kcal Electronic energy + Delta-G solvation = -20450.117833 eV Core-core repulsion = 17198.548296 eV Total energy + Delta-G solvation = -3251.569536 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.83024 -40.53296 -37.75638 -36.88534 -35.77694 -35.06293 -32.96776 -32.56940 -29.77972 -28.19287 -25.81665 -25.18448 -23.73141 -22.28819 -21.11774 -20.68330 -19.38688 -18.46788 -18.22446 -17.78586 -17.34760 -16.80404 -16.48932 -16.13614 -15.59888 -15.56689 -15.19311 -14.95079 -14.25564 -14.11465 -13.79199 -13.71637 -13.50856 -13.36652 -13.16566 -12.69742 -12.65186 -12.58419 -12.46349 -12.32624 -11.63657 -11.57551 -11.26769 -11.11410 -10.92979 -10.52327 -10.45577 -10.17216 -9.55018 -8.17274 -6.28507 1.43518 1.46245 1.51499 1.53965 1.59554 2.07859 2.30842 2.43626 2.82819 3.16625 3.43747 3.87946 3.96990 4.06650 4.13180 4.21816 4.25298 4.27529 4.35289 4.59363 4.64468 4.73597 4.88854 4.98361 4.99958 5.03175 5.19985 5.46061 5.48596 5.56663 5.74770 5.75199 5.86782 5.87804 6.19830 6.25209 6.87951 6.92238 7.18057 7.41036 7.51169 8.94614 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.036170 B = 0.003111 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.936727 B = 8999.376432 C = 9638.981908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.102 4.102 11 C 0.149 3.851 12 N -0.732 5.732 13 C 0.698 3.302 14 O -0.629 6.629 15 N -0.625 5.625 16 C 0.103 3.897 17 C 0.098 3.902 18 N -0.713 5.713 19 C 0.516 3.484 20 O -0.597 6.597 21 C -0.152 4.152 22 C 0.119 3.881 23 H 0.263 0.737 24 H -0.007 1.007 25 H -0.008 1.008 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.409 0.591 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.131 0.869 35 H 0.408 0.592 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.996 -21.791 -1.397 23.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.140 4.140 11 C 0.024 3.976 12 N -0.390 5.390 13 C 0.399 3.601 14 O -0.510 6.510 15 N -0.362 5.362 16 C -0.020 4.020 17 C -0.027 4.027 18 N -0.364 5.364 19 C 0.303 3.697 20 O -0.478 6.478 21 C -0.193 4.193 22 C -0.005 4.005 23 H 0.072 0.928 24 H 0.011 0.989 25 H 0.011 0.989 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.249 0.751 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.149 0.851 35 H 0.245 0.755 36 H 0.139 0.861 37 H 0.122 0.878 38 H 0.103 0.897 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.536 -21.854 -1.394 23.504 hybrid contribution 0.335 0.736 0.087 0.813 sum 8.871 -21.118 -1.307 22.943 Atomic orbital electron populations 1.70100 1.07920 1.27823 1.51715 1.26005 0.95717 1.03484 0.94843 0.85495 0.78202 0.78049 0.79261 1.19026 1.21297 1.19057 1.21673 0.93776 0.92054 1.50422 0.91499 1.18929 0.94446 0.92870 0.95110 1.21595 0.98458 0.91790 1.02110 1.21091 0.91336 0.84562 1.00619 1.45339 1.10834 1.03810 1.79056 1.16162 0.84916 0.81503 0.77522 1.90889 1.16316 1.84362 1.59433 1.47144 1.05616 1.05987 1.77455 1.22013 1.01418 0.79638 0.98968 1.22275 0.81902 1.00827 0.97647 1.45959 1.07052 1.12174 1.71224 1.20887 0.83919 0.89968 0.74897 1.90753 1.24646 1.79980 1.52427 1.22422 1.05145 0.91275 1.00452 1.21523 0.79019 1.02132 0.97794 0.92843 0.98893 0.98946 0.91417 0.91316 0.93262 0.93429 0.75130 0.88181 0.89742 0.90220 0.85086 0.75496 0.86095 0.87770 0.89739 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.58 13.29 21.45 0.28 -56.30 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 3 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 7 C -0.54 -29.65 9.11 25.60 0.23 -29.42 16 8 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.02 1.23 4.97 29.85 0.15 1.38 16 10 C -0.10 -3.73 5.27 30.59 0.16 -3.57 16 11 C 0.15 4.99 5.68 86.38 0.49 5.48 16 12 N -0.73 -18.72 5.45 -478.53 -2.61 -21.33 16 13 C 0.70 18.57 8.22 179.05 1.47 20.04 16 14 O -0.63 -22.18 15.57 -3.99 -0.06 -22.24 16 15 N -0.62 -11.08 2.77 -840.40 -2.33 -13.41 16 16 C 0.10 1.42 6.18 86.51 0.53 1.96 16 17 C 0.10 0.87 6.48 86.37 0.56 1.43 16 18 N -0.71 -8.00 5.30 -462.76 -2.45 -10.45 16 19 C 0.52 8.81 7.11 87.99 0.63 9.44 16 20 O -0.60 -15.59 17.91 -3.03 -0.05 -15.64 16 21 C -0.15 -1.92 5.60 30.11 0.17 -1.75 16 22 C 0.12 1.54 6.09 86.55 0.53 2.07 16 23 H 0.26 15.01 8.31 -92.72 -0.77 14.24 16 24 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 25 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 26 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.41 7.80 5.74 -92.70 -0.53 7.27 16 31 H 0.10 1.73 6.81 -2.38 -0.02 1.71 16 32 H 0.08 0.99 8.11 -2.39 -0.02 0.97 16 33 H 0.08 0.84 7.03 -2.39 -0.02 0.82 16 34 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.41 3.66 8.91 -92.71 -0.83 2.84 16 36 H 0.12 1.36 8.13 -2.39 -0.02 1.34 16 37 H 0.10 1.22 7.09 -2.38 -0.02 1.20 16 38 H 0.08 1.05 7.95 -2.38 -0.02 1.04 16 39 H 0.11 1.15 5.29 -2.39 -0.01 1.14 16 Total: -1.00 -76.38 319.40 -0.10 -76.49 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -0.29 Total: 10.31 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 5.38 Total: 7.35 kcal Atomic # 7 Polarization: -94.39 SS G_CDS: -7.11 Total: -101.49 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -0.12 Total: -37.89 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -76.38 -0.10 -76.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326743603.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.082 kcal (2) G-P(sol) polarization free energy of solvation -76.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds