Wall clock time and date at job start Mon Mar 30 2020 01:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47539 * 2 1 4 4 O 1.21282 * 119.99947 * 359.97438 * 3 2 1 5 5 N 1.34767 * 120.00026 * 179.97438 * 3 2 1 6 6 C 1.46503 * 120.00041 * 180.02562 * 5 3 2 7 7 H 1.09000 * 110.90359 * 322.58059 * 6 5 3 8 8 C 1.55144 * 110.99518 * 86.45245 * 6 5 3 9 9 C 1.54317 * 103.01861 * 153.74548 * 8 6 5 10 10 N 1.47440 * 107.23368 * 337.71644 * 9 8 6 11 11 C 1.46904 * 110.99676 * 236.73977 * 10 9 8 12 12 C 1.50695 * 109.47290 * 290.12778 * 11 10 9 13 13 O 1.21289 * 120.00206 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99837 * 180.02562 * 12 11 10 15 15 C 1.37099 * 119.99975 * 180.02562 * 14 12 11 16 16 H 1.08005 * 119.99969 * 359.97438 * 15 14 12 17 17 C 1.38942 * 120.00014 * 180.02562 * 15 14 12 18 18 N 1.31414 * 120.00173 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00119 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47366 * 90.00135 * 19 17 15 21 21 H 1.48501 * 109.47021 * 210.00180 * 19 17 15 22 22 H 1.48497 * 109.47127 * 330.00172 * 19 17 15 23 23 C 1.47842 * 108.57011 * 359.01064 * 10 9 8 24 24 H 1.08993 * 109.47410 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47311 * 300.00549 * 1 2 3 26 26 H 1.09005 * 109.46770 * 59.99811 * 1 2 3 27 27 H 1.08997 * 109.47311 * 239.99451 * 2 1 3 28 28 H 1.08998 * 109.46513 * 119.99916 * 2 1 3 29 29 H 0.97000 * 120.00392 * 359.97438 * 5 3 2 30 30 H 1.08999 * 110.69931 * 35.36329 * 8 6 5 31 31 H 1.09000 * 110.70045 * 272.13130 * 8 6 5 32 32 H 1.09000 * 109.88423 * 97.12723 * 9 8 6 33 33 H 1.09001 * 109.88420 * 218.14685 * 9 8 6 34 34 H 1.08998 * 109.47010 * 50.12990 * 11 10 9 35 35 H 1.09006 * 109.46769 * 170.12494 * 11 10 9 36 36 H 0.96996 * 120.00100 * 359.97438 * 14 12 11 37 37 H 0.97005 * 120.00185 * 180.02562 * 18 17 15 38 38 H 1.09004 * 110.37187 * 142.92392 * 23 10 9 39 39 H 1.09002 * 110.37256 * 265.15497 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 8 1.2444 2.3427 -0.0005 5 7 3.3574 1.6669 0.0005 6 6 3.8459 3.0481 0.0011 7 1 3.2133 3.6846 -0.6177 8 6 3.9462 3.6017 1.4470 9 6 5.0426 4.6814 1.3305 10 7 5.8526 4.3551 0.1426 11 6 7.2701 4.2037 0.4974 12 6 7.8432 5.5489 0.8618 13 8 7.1400 6.5366 0.8296 14 7 9.1373 5.6545 1.2234 15 6 9.6586 6.8783 1.5554 16 1 9.0323 7.7578 1.5268 17 6 10.9927 6.9872 1.9278 18 7 11.4923 8.1602 2.2465 19 14 12.0760 5.4662 1.9767 20 1 12.7192 5.2737 0.6521 21 1 13.1234 5.6376 3.0153 22 1 11.2466 4.2780 2.3015 23 6 5.3225 3.1147 -0.4626 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 3.9878 0.9297 0.0013 30 1 4.2501 2.8169 2.1397 31 1 2.9998 4.0451 1.7563 32 1 4.5847 5.6631 1.2090 33 1 5.6683 4.6721 2.2230 34 1 7.3616 3.5274 1.3473 35 1 7.8157 3.7944 -0.3529 36 1 9.6996 4.8646 1.2495 37 1 12.4239 8.2363 2.5061 38 1 5.3767 3.1698 -1.5499 39 1 5.8756 2.2487 -0.0991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481684051.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:39 Heat of formation + Delta-G solvation = -94.856586 kcal Electronic energy + Delta-G solvation = -20360.127769 eV Core-core repulsion = 17108.458977 eV Total energy + Delta-G solvation = -3251.668792 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.19682 -40.40251 -39.09494 -36.04781 -35.38568 -33.78173 -33.67789 -32.06572 -29.71675 -28.27090 -25.97579 -25.04246 -22.40712 -22.07018 -21.34543 -21.08572 -20.10848 -18.24617 -17.70505 -17.54285 -16.88975 -16.72023 -16.46781 -15.90812 -15.48557 -15.19173 -14.74144 -14.70547 -14.60021 -14.16772 -14.12223 -13.81348 -13.45226 -13.10318 -12.96073 -12.74269 -12.62465 -12.46329 -12.41479 -12.33627 -11.99751 -11.96985 -11.79542 -11.49185 -10.89310 -10.41423 -10.23208 -10.10819 -9.24743 -8.40003 -6.01171 1.30547 1.37276 1.45885 1.67071 1.98230 2.08246 2.24544 2.74884 3.15009 3.21400 3.51895 3.71123 3.85210 4.01133 4.16526 4.22364 4.29293 4.31184 4.34152 4.39438 4.47412 4.62630 4.76794 4.82854 4.94666 4.99615 5.03078 5.09556 5.16944 5.35376 5.48601 5.54307 5.87532 5.96312 6.06071 6.59303 6.61684 6.90201 7.31545 7.41552 7.99996 8.77920 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.050719 B = 0.003176 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.929895 B = 8814.828846 C = 9130.853527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.504 3.496 4 O -0.592 6.592 5 N -0.707 5.707 6 C 0.142 3.858 7 H 0.076 0.924 8 C -0.140 4.140 9 C 0.060 3.940 10 N -0.532 5.532 11 C 0.052 3.948 12 C 0.449 3.551 13 O -0.610 6.610 14 N -0.593 5.593 15 C -0.327 4.327 16 H 0.052 0.948 17 C -0.019 4.019 18 N -0.937 5.937 19 Si 0.968 3.032 20 H -0.256 1.256 21 H -0.277 1.277 22 H -0.228 1.228 23 C 0.047 3.953 24 H 0.085 0.915 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.420 0.580 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.127 0.873 36 H 0.390 0.610 37 H 0.279 0.721 38 H 0.097 0.903 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.389 -26.595 -4.266 29.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C 0.292 3.708 4 O -0.472 6.472 5 N -0.360 5.360 6 C 0.036 3.964 7 H 0.094 0.906 8 C -0.180 4.180 9 C -0.068 4.068 10 N -0.257 5.257 11 C -0.079 4.079 12 C 0.236 3.764 13 O -0.494 6.494 14 N -0.235 5.235 15 C -0.457 4.457 16 H 0.070 0.930 17 C -0.217 4.217 18 N -0.578 5.578 19 Si 0.788 3.212 20 H -0.181 1.181 21 H -0.202 1.202 22 H -0.151 1.151 23 C -0.080 4.080 24 H 0.104 0.896 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.140 0.860 28 H 0.138 0.862 29 H 0.258 0.742 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.145 0.855 36 H 0.226 0.774 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.279 -24.751 -4.592 28.461 hybrid contribution 1.160 -0.293 0.885 1.488 sum -12.119 -25.044 -3.707 28.068 Atomic orbital electron populations 1.21553 0.94024 1.02561 1.01655 1.21692 0.97752 0.91061 1.06916 1.21638 0.81887 0.93101 0.74142 1.90714 1.56603 1.48548 1.51306 1.45804 1.07386 1.07836 1.74964 1.21788 0.95097 0.83824 0.95708 0.90607 1.23095 0.98586 0.98443 0.97880 1.22526 0.94361 0.98455 0.91476 1.63072 1.01220 1.33612 1.27752 1.22052 0.90076 0.92657 1.03148 1.20994 0.81896 0.92156 0.81318 1.90557 1.60268 1.41217 1.57310 1.42017 1.10341 1.08526 1.62609 1.18980 0.95552 0.86559 1.44582 0.93013 1.26169 0.97979 1.01626 0.95897 1.69819 1.15803 1.26180 1.45994 0.85323 0.78429 0.78036 0.79430 1.18070 1.20194 1.15150 1.23274 0.92386 0.91236 1.01147 0.89569 0.93891 0.93758 0.86023 0.86234 0.74184 0.89354 0.91731 0.93267 0.93613 0.89646 0.85539 0.77410 0.91195 0.88506 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.20 71.98 0.66 -1.04 16 2 C -0.13 -1.17 6.42 29.85 0.19 -0.97 16 3 C 0.50 9.06 7.83 87.66 0.69 9.74 16 4 O -0.59 -17.26 15.73 -3.04 -0.05 -17.31 16 5 N -0.71 -9.81 5.23 -435.99 -2.28 -12.09 16 6 C 0.14 2.95 3.31 46.38 0.15 3.10 16 7 H 0.08 2.04 7.73 -2.39 -0.02 2.02 16 8 C -0.14 -3.33 6.64 31.78 0.21 -3.12 16 9 C 0.06 1.89 5.64 86.65 0.49 2.38 16 10 N -0.53 -15.77 4.85 -890.09 -4.32 -20.09 16 11 C 0.05 1.52 5.03 85.55 0.43 1.95 16 12 C 0.45 20.26 7.43 87.66 0.65 20.91 16 13 O -0.61 -34.48 15.12 -3.06 -0.05 -34.53 16 14 N -0.59 -27.77 5.09 -306.99 -1.56 -29.33 16 15 C -0.33 -19.30 10.16 84.04 0.85 -18.45 16 16 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 17 C -0.02 -1.03 5.50 84.92 0.47 -0.57 16 18 N -0.94 -56.92 13.96 21.66 0.30 -56.62 16 19 Si 0.97 38.30 27.74 68.60 1.90 40.20 16 20 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 21 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 22 H -0.23 -7.43 6.52 99.48 0.65 -6.78 16 23 C 0.05 0.88 6.31 86.77 0.55 1.43 16 24 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.04 0.68 8.10 -2.39 -0.02 0.66 16 26 H 0.04 0.69 8.10 -2.38 -0.02 0.67 16 27 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.42 2.44 8.52 -92.71 -0.79 1.65 16 30 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.05 1.52 7.32 -2.39 -0.02 1.50 16 34 H 0.09 1.98 7.96 -2.39 -0.02 1.96 16 35 H 0.13 2.86 8.07 -2.38 -0.02 2.84 16 36 H 0.39 14.82 5.76 -92.71 -0.53 14.28 16 37 H 0.28 15.43 8.31 -92.70 -0.77 14.66 16 38 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.09 1.03 7.67 -2.39 -0.02 1.01 16 Total: -1.00 -85.99 323.83 -1.03 -87.02 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -0.32 Total: 27.37 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 5.34 Total: 15.37 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -7.86 Total: -118.13 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -0.09 Total: -51.83 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 1.90 Total: 40.20 kcal Total: -85.99 -1.03 -87.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481684051.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.838 kcal (2) G-P(sol) polarization free energy of solvation -85.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds