Wall clock time and date at job start Mon Mar 30 2020 01:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46859 * 2 1 4 4 H 1.09002 * 109.46908 * 304.99698 * 3 2 1 5 5 N 1.46503 * 109.46945 * 64.99678 * 3 2 1 6 6 C 1.34772 * 120.00013 * 274.99539 * 5 3 2 7 7 C 1.50707 * 119.99832 * 180.02562 * 6 5 3 8 8 O 1.21279 * 120.00409 * 0.02562 * 6 5 3 9 9 C 1.50699 * 109.47085 * 184.99966 * 3 2 1 10 10 O 1.21283 * 119.99458 * 240.00190 * 9 3 2 11 11 N 1.34775 * 119.99865 * 59.99570 * 9 3 2 12 12 C 1.46500 * 119.99438 * 180.02562 * 11 9 3 13 13 C 1.53498 * 114.20367 * 155.00573 * 12 11 9 14 14 N 1.47065 * 87.98675 * 87.51602 * 13 12 11 15 15 C 1.36935 * 136.05778 * 207.07950 * 14 13 12 16 16 H 1.07997 * 119.99961 * 6.77313 * 15 14 13 17 17 C 1.38812 * 119.99962 * 186.76980 * 15 14 13 18 18 N 1.31618 * 119.99992 * 172.26235 * 17 15 14 19 19 Si 1.86794 * 120.00220 * 352.26666 * 17 15 14 20 20 H 1.48493 * 109.47463 * 175.35996 * 19 17 15 21 21 H 1.48510 * 109.46810 * 295.35961 * 19 17 15 22 22 H 1.48498 * 109.47153 * 55.35226 * 19 17 15 23 23 C 1.47070 * 87.88470 * 27.34556 * 14 13 12 24 24 H 1.08996 * 109.47570 * 300.00245 * 1 2 3 25 25 H 1.09004 * 109.46781 * 60.00517 * 1 2 3 26 26 H 1.08999 * 109.47153 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46932 * 240.00444 * 2 1 3 28 28 H 1.08996 * 109.46848 * 119.99806 * 2 1 3 29 29 H 0.97002 * 119.99664 * 95.00531 * 5 3 2 30 30 H 1.08994 * 109.46760 * 90.00494 * 7 6 5 31 31 H 1.09006 * 109.47090 * 210.00295 * 7 6 5 32 32 H 1.09000 * 109.46789 * 329.99947 * 7 6 5 33 33 H 0.96999 * 120.00385 * 0.02562 * 11 9 3 34 34 H 1.09000 * 113.28874 * 21.93582 * 12 11 9 35 35 H 1.09003 * 113.46903 * 332.73508 * 13 12 11 36 36 H 1.09002 * 113.47097 * 202.29943 * 13 12 11 37 37 H 0.97005 * 119.99783 * 4.88000 * 18 17 15 38 38 H 1.08996 * 113.47141 * 87.43428 * 23 14 13 39 39 H 1.09002 * 113.46180 * 217.88172 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 7 1.6523 2.0975 1.2518 6 6 0.4350 2.6644 1.3669 7 6 0.0365 3.3387 2.6544 8 8 -0.3397 2.6320 0.4343 9 6 3.5419 1.4444 -0.1238 10 8 4.2215 1.9437 0.7478 11 7 4.1297 0.8912 -1.2031 12 6 5.5898 0.8926 -1.3231 13 6 6.1495 -0.2297 -2.2082 14 7 5.9743 0.6642 -3.3628 15 6 5.7618 0.5089 -4.7066 16 1 5.5790 -0.4743 -5.1144 17 6 5.7812 1.6153 -5.5448 18 7 5.7297 1.4532 -6.8499 19 14 5.8807 3.3342 -4.8204 20 1 5.9999 4.3276 -5.9176 21 1 4.6525 3.6113 -4.0329 22 1 7.0687 3.4300 -3.9346 23 6 6.1344 1.7981 -2.4401 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2718 2.1233 1.9978 30 1 0.3214 4.3901 2.6172 31 1 -1.0425 3.2591 2.7874 32 1 0.5422 2.8544 3.4898 33 1 3.5861 0.4922 -1.9003 34 1 6.1007 1.0044 -0.3668 35 1 5.5127 -1.1137 -2.2430 36 1 7.1922 -0.4688 -1.9986 37 1 5.6068 0.5666 -7.2240 38 1 7.1729 2.0937 -2.2916 39 1 5.4845 2.6418 -2.6724 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494452008.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:03 Heat of formation + Delta-G solvation = -13.739634 kcal Electronic energy + Delta-G solvation = -21174.373403 eV Core-core repulsion = 17926.222106 eV Total energy + Delta-G solvation = -3248.151297 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.60194 -39.44241 -38.08364 -35.40881 -33.75172 -32.67687 -32.06156 -29.91237 -28.24366 -26.79606 -25.45062 -22.89105 -22.14053 -20.85747 -20.37234 -19.61448 -17.81228 -17.54902 -16.85532 -16.24952 -15.85267 -15.65665 -15.09933 -14.53553 -14.24418 -14.10076 -13.83350 -13.50343 -13.39644 -13.07656 -12.79126 -12.68542 -12.27492 -12.11533 -12.00518 -11.64603 -11.41467 -11.10106 -11.01710 -10.60664 -10.37754 -10.02520 -9.87989 -9.57078 -9.26579 -9.19848 -8.91888 -8.63675 -7.22855 -6.37562 -3.29610 2.45137 2.59538 2.80379 3.39376 3.40362 3.44131 3.62323 4.53213 4.54748 4.65097 4.66962 4.77567 4.91788 4.98491 5.04936 5.17143 5.24765 5.36570 5.42029 5.59484 5.66547 5.76656 5.83378 5.85430 5.94769 6.11109 6.15776 6.21829 6.24739 6.30061 6.33828 6.85421 7.02035 7.35551 7.63333 8.06972 8.17754 8.23103 8.91411 9.44025 10.28825 11.14986 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023249 B = 0.004854 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.079512 B = 5767.593913 C = 5896.303965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.125 3.875 4 H 0.116 0.884 5 N -0.711 5.711 6 C 0.511 3.489 7 C -0.171 4.171 8 O -0.542 6.542 9 C 0.513 3.487 10 O -0.547 6.547 11 N -0.687 5.687 12 C 0.097 3.903 13 C 0.115 3.885 14 N -0.627 5.627 15 C -0.310 4.310 16 H 0.083 0.917 17 C -0.021 4.021 18 N -0.932 5.932 19 Si 1.071 2.929 20 H -0.295 1.295 21 H -0.295 1.295 22 H -0.287 1.287 23 C 0.084 3.916 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.409 0.591 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.409 0.591 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.261 0.739 38 H 0.056 0.944 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.565 -1.056 19.748 21.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.016 3.984 4 H 0.134 0.866 5 N -0.365 5.365 6 C 0.299 3.701 7 C -0.231 4.231 8 O -0.419 6.419 9 C 0.298 3.702 10 O -0.425 6.425 11 N -0.337 5.337 12 C -0.009 4.009 13 C -0.013 4.013 14 N -0.357 5.357 15 C -0.436 4.436 16 H 0.101 0.899 17 C -0.220 4.220 18 N -0.574 5.574 19 Si 0.903 3.097 20 H -0.222 1.222 21 H -0.223 1.223 22 H -0.214 1.214 23 C -0.042 4.042 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.246 0.754 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.245 0.755 34 H 0.123 0.877 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.552 0.838 19.008 20.860 hybrid contribution 0.162 -1.805 0.257 1.831 sum -8.390 -0.968 19.264 21.034 Atomic orbital electron populations 1.21798 0.94014 1.00963 1.03244 1.21912 0.97780 0.93889 1.03178 1.20885 0.91705 0.95807 0.89986 0.86641 1.45826 1.17058 1.57566 1.16067 1.20764 0.81134 0.77895 0.90348 1.21868 1.04141 1.02203 0.94845 1.90748 1.51276 1.58803 1.41059 1.20491 0.89773 0.77862 0.82076 1.90660 1.65185 1.45859 1.40769 1.45449 1.07539 1.58515 1.22209 1.22530 0.80138 0.99688 0.98572 1.22701 0.98227 0.93978 0.86350 1.46119 1.84633 1.01282 1.03626 1.20105 1.47740 0.96311 0.79402 0.89897 1.25702 0.99134 1.02807 0.94402 1.70927 1.51181 1.25547 1.09714 0.83682 0.76237 0.75946 0.73790 1.22232 1.22297 1.21408 1.23271 0.98727 0.93533 0.88680 0.92481 0.91761 0.93109 0.90262 0.91211 0.75368 0.88751 0.88865 0.90163 0.75491 0.87731 0.93193 0.92995 0.92850 0.92658 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.51 37.16 0.32 -1.25 16 2 C -0.13 -1.36 5.55 -26.73 -0.15 -1.51 16 3 C 0.12 1.55 2.67 -69.08 -0.18 1.36 16 4 H 0.12 1.59 7.58 -51.93 -0.39 1.20 16 5 N -0.71 -7.76 4.90 -54.93 -0.27 -8.03 16 6 C 0.51 5.67 6.51 -10.98 -0.07 5.59 16 7 C -0.17 -1.16 10.30 36.01 0.37 -0.79 16 8 O -0.54 -7.96 14.24 5.56 0.08 -7.89 16 9 C 0.51 7.49 7.22 -10.99 -0.08 7.42 16 10 O -0.55 -9.11 15.43 5.55 0.09 -9.03 16 11 N -0.69 -10.59 5.26 -53.48 -0.28 -10.87 16 12 C 0.10 1.64 4.61 -67.67 -0.31 1.33 16 13 C 0.11 2.07 8.44 -8.51 -0.07 2.00 16 14 N -0.63 -14.64 3.70 -184.60 -0.68 -15.33 16 15 C -0.31 -8.62 11.08 -15.06 -0.17 -8.79 16 16 H 0.08 2.42 8.05 -52.49 -0.42 2.00 16 17 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16 18 N -0.93 -29.12 13.70 55.49 0.76 -28.36 16 19 Si 1.07 26.97 25.13 -169.99 -4.27 22.70 16 20 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 21 H -0.29 -7.13 6.65 56.52 0.38 -6.76 16 22 H -0.29 -6.77 6.13 56.52 0.35 -6.43 16 23 C 0.08 1.76 5.54 -8.36 -0.05 1.71 16 24 H 0.06 0.66 5.64 -51.93 -0.29 0.36 16 25 H 0.06 0.80 7.85 -51.93 -0.41 0.39 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.80 7.43 -51.93 -0.39 0.41 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.41 3.98 7.79 -40.82 -0.32 3.66 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.41 6.13 8.12 -40.82 -0.33 5.79 16 34 H 0.10 1.64 7.45 -51.93 -0.39 1.26 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.26 8.04 8.73 -40.82 -0.36 7.68 16 38 H 0.06 1.12 7.73 -51.93 -0.40 0.72 16 39 H 0.05 1.20 4.65 -51.93 -0.24 0.96 16 LS Contribution 316.20 15.07 4.77 4.77 Total: -1.00 -34.07 316.20 -6.08 -40.14 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -5.77 Total: 5.55 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -0.49 Total: 6.35 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: -0.47 Total: -62.59 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.16 Total: -16.91 kcal Atomic # 14 Polarization: 26.97 SS G_CDS: -4.27 Total: 22.70 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.07 -6.08 -40.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494452008.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.402 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds