Wall clock time and date at job start Mon Mar 30 2020 00:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99828 * 2 1 4 4 C 1.53002 * 109.46878 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47103 * 65.00156 * 4 3 2 6 6 C 1.36930 * 120.00067 * 269.99886 * 5 4 3 7 7 H 1.08003 * 120.00265 * 141.18024 * 6 5 4 8 8 C 1.38815 * 120.00056 * 321.18933 * 6 5 4 9 9 N 1.31627 * 119.99666 * 339.55444 * 8 6 5 10 10 Si 1.86793 * 120.00415 * 159.56389 * 8 6 5 11 11 H 1.48503 * 109.47000 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47485 * 119.99799 * 10 8 6 13 13 H 1.48507 * 109.47026 * 239.99666 * 10 8 6 14 14 C 1.46501 * 119.99829 * 89.99698 * 5 4 3 15 15 C 1.50704 * 109.47148 * 264.62555 * 14 5 4 16 16 N 1.30268 * 126.28416 * 89.97519 * 15 14 5 17 17 N 1.28672 * 109.38291 * 180.02562 * 16 15 14 18 18 C 1.30269 * 109.37734 * 359.97438 * 17 16 15 19 19 C 1.50707 * 126.28066 * 179.97438 * 18 17 16 20 20 C 1.53002 * 109.46734 * 300.02689 * 19 18 17 21 21 C 1.53001 * 109.46861 * 60.02670 * 19 18 17 22 22 O 1.34362 * 126.27974 * 270.26362 * 15 14 5 23 23 H 1.09005 * 109.46708 * 60.00562 * 1 2 3 24 24 H 1.09004 * 109.47069 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47318 * 300.00058 * 1 2 3 26 26 H 1.09006 * 109.46980 * 59.99727 * 3 2 1 27 27 H 1.09003 * 109.47015 * 299.99761 * 3 2 1 28 28 H 1.08995 * 109.46998 * 305.00059 * 4 3 2 29 29 H 1.09000 * 109.46378 * 184.99959 * 4 3 2 30 30 H 0.96998 * 119.99973 * 180.02562 * 9 8 6 31 31 H 1.08999 * 109.46766 * 144.62600 * 14 5 4 32 32 H 1.09001 * 109.47389 * 24.62760 * 14 5 4 33 33 H 1.09000 * 109.46963 * 180.02562 * 19 18 17 34 34 H 1.09000 * 109.47445 * 60.00235 * 20 19 18 35 35 H 1.09002 * 109.46787 * 179.97438 * 20 19 18 36 36 H 1.08996 * 109.47178 * 299.99575 * 20 19 18 37 37 H 1.09002 * 109.46859 * 180.02562 * 21 19 18 38 38 H 1.09000 * 109.47298 * 299.99754 * 21 19 18 39 39 H 1.08995 * 109.47220 * 60.00034 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0978 -0.7974 -1.3345 7 1 3.8043 -1.3112 -2.2380 8 6 4.5978 -1.5171 -0.2579 9 7 5.3168 -0.9102 0.6625 10 14 4.2503 -3.3469 -0.1155 11 1 3.4251 -3.7854 -1.2697 12 1 5.5328 -4.0955 -0.1107 13 1 3.5163 -3.6146 1.1474 14 6 4.2883 1.3999 -2.4130 15 6 3.0799 1.4841 -3.3097 16 7 2.1329 2.3762 -3.2453 17 7 1.2627 2.1423 -4.1638 18 6 1.6254 1.0932 -4.8457 19 6 0.8834 0.4846 -6.0078 20 6 -0.5123 0.0540 -5.5525 21 6 0.7580 1.5173 -7.1298 22 8 2.7790 0.6496 -4.3188 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8507 0.5685 0.8427 29 1 3.9784 2.1766 0.0902 30 1 5.6665 -1.4132 1.4145 31 1 5.1197 0.9605 -2.9641 32 1 4.5626 2.4002 -2.0780 33 1 1.4307 -0.3843 -6.3732 34 1 -1.0596 0.9230 -5.1870 35 1 -1.0491 -0.3857 -6.3931 36 1 -0.4229 -0.6816 -4.7532 37 1 0.2210 1.0773 -7.9701 38 1 0.2108 2.3863 -6.7643 39 1 1.7524 1.8241 -7.4541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559888559.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:28 Heat of formation + Delta-G solvation = 6.083731 kcal Electronic energy + Delta-G solvation = -21803.085300 eV Core-core repulsion = 18555.793609 eV Total energy + Delta-G solvation = -3247.291691 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.49877 -37.25452 -35.96198 -35.42677 -35.33603 -31.85871 -30.30361 -28.72576 -27.30204 -26.24535 -25.66336 -23.86157 -23.41053 -21.75113 -20.53100 -20.42124 -16.94851 -16.72482 -16.54289 -15.69062 -15.24885 -14.90159 -14.73034 -14.62949 -14.11500 -13.82579 -13.53354 -13.34277 -13.09079 -12.31750 -12.08752 -11.88676 -11.74077 -11.66308 -11.38403 -11.28726 -11.23374 -11.17580 -10.88399 -10.87178 -10.76785 -10.33224 -10.22268 -10.06154 -9.79096 -8.98360 -8.69438 -8.52729 -6.79789 -5.88457 -3.48395 1.83751 2.90016 3.02375 3.37361 3.45308 3.49643 4.31964 4.46879 4.69970 4.73473 4.93711 5.07044 5.19013 5.32907 5.38768 5.49791 5.53887 5.70641 5.75026 5.78806 5.85344 5.88160 6.05878 6.09880 6.11358 6.18708 6.21063 6.24758 6.31353 6.39842 6.51477 6.59283 6.63950 7.54956 7.77756 8.06111 8.42945 8.97490 9.04645 9.65863 10.17953 11.14528 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.006448 C = 0.006281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.538735 B = 4341.165888 C = 4456.555204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.038 3.962 4 C 0.142 3.858 5 N -0.552 5.552 6 C -0.259 4.259 7 H 0.059 0.941 8 C 0.030 3.970 9 N -0.885 5.885 10 Si 0.904 3.096 11 H -0.276 1.276 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.220 3.780 15 C 0.182 3.818 16 N -0.315 5.315 17 N -0.291 5.291 18 C 0.134 3.866 19 C 0.008 3.992 20 C -0.143 4.143 21 C -0.142 4.142 22 O -0.221 6.221 23 H 0.027 0.973 24 H 0.073 0.927 25 H 0.028 0.972 26 H 0.026 0.974 27 H 0.044 0.956 28 H 0.106 0.894 29 H 0.048 0.952 30 H 0.256 0.744 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.434 3.367 -9.378 12.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C -0.041 4.041 4 C 0.016 3.984 5 N -0.269 5.269 6 C -0.388 4.388 7 H 0.077 0.923 8 C -0.171 4.171 9 N -0.527 5.527 10 Si 0.733 3.267 11 H -0.201 1.201 12 H -0.217 1.217 13 H -0.212 1.212 14 C 0.088 3.912 15 C -0.032 4.032 16 N -0.161 5.161 17 N -0.138 5.138 18 C -0.079 4.079 19 C -0.012 4.012 20 C -0.201 4.201 21 C -0.199 4.199 22 O -0.099 6.099 23 H 0.045 0.955 24 H 0.091 0.909 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.062 0.938 28 H 0.124 0.876 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.875 4.134 -8.769 12.490 hybrid contribution -0.021 -1.715 -0.139 1.720 sum -7.896 2.419 -8.908 12.148 Atomic orbital electron populations 1.22599 0.84187 1.01253 0.98501 1.88163 1.16638 1.27877 1.94931 1.23448 0.98339 0.84224 0.98084 1.21198 0.87942 0.96970 0.92241 1.43781 1.73720 1.03168 1.06251 1.18888 1.37291 0.80907 1.01745 0.92334 1.25078 0.95523 0.98204 0.98321 1.69978 1.33173 1.35993 1.13508 0.86232 0.77488 0.84921 0.78012 1.20133 1.21743 1.21219 1.19635 0.86432 0.97705 0.87405 1.31056 1.01108 0.84100 0.86936 1.74264 1.01104 1.24112 1.16655 1.74132 1.22089 1.13842 1.03717 1.27726 0.85956 0.94356 0.99825 1.19554 0.94978 0.98375 0.88335 1.21837 0.94123 1.02297 1.01858 1.21828 1.02584 0.98831 0.96686 1.84871 1.35814 1.49727 1.39530 0.95467 0.90855 0.95390 0.95612 0.93782 0.87598 0.93356 0.93382 0.89907 0.89119 0.88634 0.91343 0.91133 0.92091 0.91134 0.91290 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 101.05 1.11 1.71 16 2 O -0.36 -8.39 10.18 -35.23 -0.36 -8.75 16 3 C 0.04 0.82 6.28 37.16 0.23 1.06 16 4 C 0.14 3.30 5.76 -4.04 -0.02 3.27 16 5 N -0.55 -13.35 2.39 -174.61 -0.42 -13.77 16 6 C -0.26 -6.98 8.94 -15.06 -0.13 -7.11 16 7 H 0.06 1.64 7.91 -52.48 -0.42 1.22 16 8 C 0.03 0.81 4.97 -17.43 -0.09 0.72 16 9 N -0.89 -24.69 11.50 55.49 0.64 -24.05 16 10 Si 0.90 21.98 29.60 -169.99 -5.03 16.95 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 C 0.22 4.53 6.34 -5.19 -0.03 4.50 16 15 C 0.18 3.80 7.83 -12.94 -0.10 3.70 16 16 N -0.31 -6.63 11.04 32.55 0.36 -6.27 16 17 N -0.29 -5.72 12.22 32.55 0.40 -5.32 16 18 C 0.13 2.38 6.99 -12.94 -0.09 2.29 16 19 C 0.01 0.10 3.39 -91.77 -0.31 -0.21 16 20 C -0.14 -1.63 9.18 37.16 0.34 -1.29 16 21 C -0.14 -1.44 9.18 37.16 0.34 -1.10 16 22 O -0.22 -4.51 10.87 5.39 0.06 -4.45 16 23 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.98 6.71 -51.93 -0.35 0.63 16 28 H 0.11 2.78 5.57 -51.93 -0.29 2.50 16 29 H 0.05 1.01 7.86 -51.93 -0.41 0.60 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.08 1.64 8.08 -51.93 -0.42 1.22 16 32 H 0.09 1.65 7.83 -51.93 -0.41 1.25 16 33 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 330.82 15.07 4.99 4.99 Total: -1.00 -31.29 330.82 -4.19 -35.48 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -6.07 Total: -2.32 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 1.25 Total: 7.53 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: 0.98 Total: -49.42 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.30 Total: -13.21 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.29 -4.19 -35.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559888559.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.567 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds