Wall clock time and date at job start Mon Mar 30 2020 00:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 119.99681 * 2 1 4 4 C 1.52996 * 109.47129 * 269.99946 * 3 2 1 5 5 N 1.46501 * 109.47129 * 179.97438 * 4 3 2 6 6 C 1.36932 * 120.00370 * 179.97438 * 5 4 3 7 7 H 1.08008 * 119.99692 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.00476 * 180.02562 * 6 5 4 9 9 N 1.31623 * 119.99605 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00127 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47110 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47158 * 119.99743 * 10 8 6 13 13 H 1.48496 * 109.47256 * 239.99889 * 10 8 6 14 14 C 1.34773 * 120.00333 * 179.97438 * 2 1 3 15 15 O 1.21281 * 120.00123 * 185.78313 * 14 2 1 16 16 C 1.50707 * 119.99825 * 5.78980 * 14 2 1 17 17 C 1.52996 * 110.21390 * 296.70610 * 16 14 2 18 18 C 1.54482 * 110.24592 * 174.77641 * 16 14 2 19 19 C 1.54767 * 101.70454 * 266.27167 * 18 16 14 20 20 C 1.51281 * 104.23470 * 335.30556 * 19 18 16 21 21 O 1.21273 * 124.94250 * 196.17004 * 20 19 18 22 22 N 1.34423 * 110.11696 * 16.19061 * 20 19 18 23 23 H 1.09003 * 109.47019 * 274.17154 * 1 2 3 24 24 H 1.08993 * 109.47188 * 34.17374 * 1 2 3 25 25 H 1.09002 * 109.46918 * 154.18016 * 1 2 3 26 26 H 1.09002 * 109.47153 * 30.00601 * 3 2 1 27 27 H 1.09010 * 109.46820 * 149.99961 * 3 2 1 28 28 H 1.08998 * 109.47087 * 299.99869 * 4 3 2 29 29 H 1.08994 * 109.46927 * 60.00040 * 4 3 2 30 30 H 0.97006 * 119.99637 * 0.02562 * 5 4 3 31 31 H 0.96995 * 119.99593 * 180.02562 * 9 8 6 32 32 H 1.09000 * 109.47503 * 59.30298 * 17 16 14 33 33 H 1.09003 * 109.47061 * 179.29997 * 17 16 14 34 34 H 1.09001 * 109.47377 * 299.29959 * 17 16 14 35 35 H 1.08999 * 110.96725 * 24.44533 * 18 16 14 36 36 H 1.08997 * 110.96630 * 148.21000 * 18 16 14 37 37 H 1.08998 * 110.52128 * 216.58606 * 19 18 16 38 38 H 1.09001 * 110.52468 * 94.02086 * 19 18 16 39 39 H 0.96996 * 124.35234 * 180.43172 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 7 3.1843 2.9795 -1.4425 6 6 3.5271 3.5723 -2.6283 7 1 3.2574 3.1045 -3.5637 8 6 4.2210 4.7746 -2.6283 9 7 4.5492 5.3450 -1.4884 10 14 4.6878 5.5835 -4.2460 11 1 4.2059 4.7475 -5.3747 12 1 4.0645 6.9291 -4.3246 13 1 6.1647 5.7168 -4.3248 14 6 2.1390 -1.1671 0.0005 15 8 3.3471 -1.1697 0.1064 16 6 1.3912 -2.4690 -0.1306 17 6 0.4595 -2.6664 1.0668 18 6 2.3843 -3.6477 -0.2352 19 6 2.5233 -3.8059 -1.7685 20 6 1.2383 -3.2288 -2.3200 21 8 0.8239 -3.4066 -3.4458 22 7 0.6229 -2.4898 -1.3809 23 1 -0.3633 0.0748 1.0250 24 1 -0.3633 0.8502 -0.5772 25 1 -0.3633 -0.9251 -0.4476 26 1 1.6084 2.0284 0.5139 27 1 3.1500 1.1384 0.5139 28 1 3.0416 0.9509 -1.9563 29 1 1.5001 1.8407 -1.9562 30 1 3.4268 3.3995 -0.6023 31 1 5.0337 6.1852 -1.4884 32 1 -0.2492 -1.8398 1.1159 33 1 -0.0838 -3.6046 0.9536 34 1 1.0477 -2.6957 1.9840 35 1 3.3413 -3.3931 0.2204 36 1 1.9680 -4.5495 0.2135 37 1 2.6152 -4.8583 -2.0372 38 1 3.3822 -3.2433 -2.1345 39 1 -0.2208 -2.0296 -1.5124 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664170078.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:32 Heat of formation + Delta-G solvation = -67.672771 kcal Electronic energy + Delta-G solvation = -21315.837238 eV Core-core repulsion = 18065.347225 eV Total energy + Delta-G solvation = -3250.490013 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.40915 -40.28338 -37.83770 -37.40612 -36.20528 -33.56634 -32.35037 -31.98489 -29.74322 -27.91896 -26.17204 -25.58357 -23.94168 -22.55560 -21.91643 -20.65797 -19.30230 -18.63035 -18.02363 -17.38702 -16.92116 -16.50485 -16.19512 -15.76553 -15.37961 -15.27422 -15.12302 -15.00318 -14.59292 -14.33822 -13.89566 -13.84276 -13.55252 -13.19573 -13.12532 -12.98645 -12.83525 -12.76942 -12.38158 -12.13925 -12.09803 -11.92229 -11.90226 -11.49379 -11.04625 -11.04180 -10.17729 -9.77258 -9.12100 -8.02775 -5.33793 1.22307 1.43542 1.44505 1.45061 1.55208 1.86407 2.28837 2.51707 3.15633 3.29885 3.31787 3.47880 3.76850 3.99075 4.03836 4.08082 4.14732 4.20497 4.33945 4.49951 4.58663 4.62480 4.75890 4.80292 4.85619 4.91293 4.98660 5.02340 5.08486 5.21451 5.35754 5.44285 5.64275 5.81599 6.19123 6.28665 6.99622 7.06689 7.25604 7.95764 8.22046 9.20563 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024455 B = 0.004411 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.707172 B = 6346.750916 C = 6822.586112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.604 5.604 3 C 0.121 3.879 4 C 0.150 3.850 5 N -0.741 5.741 6 C -0.254 4.254 7 H 0.069 0.931 8 C -0.068 4.068 9 N -0.965 5.965 10 Si 0.976 3.024 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.290 1.290 14 C 0.499 3.501 15 O -0.568 6.568 16 C 0.148 3.852 17 C -0.160 4.160 18 C -0.107 4.107 19 C -0.158 4.158 20 C 0.516 3.484 21 O -0.576 6.576 22 N -0.707 5.707 23 H 0.094 0.906 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.065 0.935 28 H -0.007 1.007 29 H 0.025 0.975 30 H 0.377 0.623 31 H 0.255 0.745 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.090 0.910 39 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.599 -19.871 9.069 25.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.336 5.336 3 C -0.003 4.003 4 C 0.022 3.978 5 N -0.384 5.384 6 C -0.386 4.386 7 H 0.087 0.913 8 C -0.261 4.261 9 N -0.615 5.615 10 Si 0.804 3.196 11 H -0.195 1.195 12 H -0.212 1.212 13 H -0.217 1.217 14 C 0.286 3.714 15 O -0.445 6.445 16 C 0.058 3.942 17 C -0.217 4.217 18 C -0.145 4.145 19 C -0.198 4.198 20 C 0.305 3.695 21 O -0.455 6.455 22 N -0.368 5.368 23 H 0.113 0.887 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.117 0.883 27 H 0.084 0.916 28 H 0.011 0.989 29 H 0.043 0.957 30 H 0.209 0.791 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.109 0.891 39 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -12.106 -20.003 8.378 24.837 hybrid contribution 0.390 1.400 -0.854 1.686 sum -11.716 -18.603 7.525 23.237 Atomic orbital electron populations 1.22482 0.77041 1.04175 1.04315 1.47818 1.08554 1.04951 1.72252 1.21367 0.97769 0.85300 0.95867 1.20918 0.94022 0.86793 0.96040 1.42355 1.67597 1.22879 1.05609 1.19580 1.29406 1.02762 0.86851 0.91343 1.25584 1.01395 0.98659 1.00437 1.69811 1.45840 1.19869 1.25967 0.85048 0.77324 0.78140 0.79054 1.19518 1.21167 1.21708 1.21601 0.87763 0.86539 0.75499 1.90713 1.15993 1.87451 1.50378 1.21297 0.93559 0.92048 0.87334 1.22422 0.99085 1.05723 0.94512 1.22730 1.00141 0.96967 0.94637 1.22454 0.95215 1.04812 0.97290 1.21411 0.86642 0.77622 0.83855 1.90738 1.71266 1.62965 1.20565 1.46593 1.25046 1.51811 1.13310 0.88732 0.90502 0.89311 0.88273 0.91612 0.98916 0.95688 0.79051 0.93633 0.89305 0.88062 0.89435 0.88389 0.85219 0.85391 0.89132 0.73798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.89 8.80 127.77 1.12 2.01 16 2 N -0.60 -15.06 2.87 -846.74 -2.43 -17.49 16 3 C 0.12 4.01 5.59 86.38 0.48 4.49 16 4 C 0.15 6.48 6.58 86.38 0.57 7.05 16 5 N -0.74 -39.61 5.60 -343.46 -1.92 -41.53 16 6 C -0.25 -14.94 9.99 84.03 0.84 -14.10 16 7 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 8 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 9 N -0.96 -59.82 13.06 21.65 0.28 -59.53 16 10 Si 0.98 47.32 29.55 68.60 2.03 49.34 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 12 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 13 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 14 C 0.50 13.15 6.75 87.66 0.59 13.74 16 15 O -0.57 -20.21 14.98 -3.03 -0.05 -20.25 16 16 C 0.15 2.42 0.72 3.31 0.00 2.42 16 17 C -0.16 -1.26 8.41 71.98 0.61 -0.65 16 18 C -0.11 -1.58 6.05 31.70 0.19 -1.39 16 19 C -0.16 -3.03 6.86 30.64 0.21 -2.82 16 20 C 0.52 12.72 8.43 87.90 0.74 13.46 16 21 O -0.58 -19.31 18.03 -3.01 -0.05 -19.36 16 22 N -0.71 -12.82 4.96 -423.34 -2.10 -14.92 16 23 H 0.09 0.84 7.50 -2.39 -0.02 0.82 16 24 H 0.08 1.19 8.10 -2.39 -0.02 1.18 16 25 H 0.09 0.92 3.17 -2.39 -0.01 0.92 16 26 H 0.10 2.90 8.07 -2.39 -0.02 2.88 16 27 H 0.07 2.50 7.35 -2.38 -0.02 2.48 16 28 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 29 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.38 20.90 7.67 -92.70 -0.71 20.19 16 31 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.09 0.50 4.77 -2.39 -0.01 0.49 16 33 H 0.10 0.39 8.14 -2.39 -0.02 0.38 16 34 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.10 1.79 6.88 -2.39 -0.02 1.77 16 36 H 0.13 0.93 7.91 -2.39 -0.02 0.91 16 37 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.42 6.17 6.64 -92.71 -0.62 5.55 16 Total: -1.00 -81.23 317.10 1.33 -79.89 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -0.24 Total: 23.17 kcal Atomic # 6 Polarization: 14.86 SS G_CDS: 5.82 Total: 20.68 kcal Atomic # 7 Polarization: -127.30 SS G_CDS: -6.17 Total: -133.47 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -0.10 Total: -39.62 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.34 kcal Total: -81.23 1.33 -79.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664170078.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.221 kcal (2) G-P(sol) polarization free energy of solvation -81.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds