Wall clock time and date at job start Mon Mar 30 2020 01:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47465 * 2 1 4 4 C 1.53005 * 109.46912 * 240.00270 * 2 1 3 5 5 C 1.50696 * 109.47168 * 64.99868 * 4 2 1 6 6 N 1.34771 * 120.00352 * 179.97438 * 5 4 2 7 7 O 1.21288 * 119.99943 * 0.02562 * 5 4 2 8 8 C 1.50698 * 109.47290 * 120.00511 * 2 1 3 9 9 O 1.21277 * 120.00279 * 119.99361 * 8 2 1 10 10 N 1.34780 * 119.99918 * 299.99845 * 8 2 1 11 11 C 1.46496 * 120.00161 * 179.97438 * 10 8 2 12 12 C 1.52997 * 109.47383 * 179.97438 * 11 10 8 13 13 H 1.08998 * 112.96317 * 306.67620 * 12 11 10 14 14 C 1.53944 * 113.77339 * 174.99986 * 12 11 10 15 15 C 1.53944 * 86.29119 * 222.09377 * 14 12 11 16 16 N 1.47574 * 86.11966 * 23.60440 * 15 14 12 17 17 C 1.36939 * 134.49573 * 155.35574 * 16 15 14 18 18 H 1.07999 * 120.00018 * 187.05988 * 17 16 15 19 19 C 1.38807 * 119.99398 * 7.06718 * 17 16 15 20 20 N 1.31621 * 120.00331 * 7.61314 * 19 17 16 21 21 Si 1.86805 * 119.99748 * 187.61354 * 19 17 16 22 22 H 1.48496 * 109.47257 * 94.81136 * 21 19 17 23 23 H 1.48504 * 109.47159 * 214.81327 * 21 19 17 24 24 H 1.48503 * 109.47225 * 334.80917 * 21 19 17 25 25 H 1.09004 * 109.47045 * 59.99581 * 1 2 3 26 26 H 1.09009 * 109.47156 * 299.99827 * 1 2 3 27 27 H 1.09001 * 109.47465 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46997 * 184.99870 * 4 2 1 29 29 H 1.09004 * 109.47011 * 305.00029 * 4 2 1 30 30 H 0.97007 * 119.99665 * 0.02562 * 6 5 4 31 31 H 0.97002 * 120.00531 * 180.02562 * 6 5 4 32 32 H 0.96997 * 119.99843 * 0.02562 * 10 8 2 33 33 H 1.09008 * 109.47219 * 300.00091 * 11 10 8 34 34 H 1.08997 * 109.47132 * 59.99667 * 11 10 8 35 35 H 1.09007 * 113.74069 * 336.43752 * 14 12 11 36 36 H 1.08997 * 113.74105 * 107.63644 * 14 12 11 37 37 H 1.08997 * 113.76801 * 137.90967 * 15 14 12 38 38 H 1.08999 * 113.76526 * 269.18970 * 15 14 12 39 39 H 0.97006 * 119.99777 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 7 1.9851 -0.3912 -3.7001 7 8 1.0116 1.0875 -2.3632 8 6 2.0323 -0.7105 1.2304 9 8 2.7295 -1.6966 1.1190 10 7 1.7068 -0.2501 2.4545 11 6 2.1946 -0.9411 3.6506 12 6 1.6853 -0.2195 4.8999 13 1 1.9190 0.8451 4.9011 14 6 2.0394 -0.9338 6.2169 15 6 0.6060 -0.5989 6.6675 16 7 0.2793 -0.5227 5.2304 17 6 -0.8678 -0.6730 4.4976 18 1 -0.8226 -0.6773 3.4186 19 6 -2.0885 -0.8197 5.1419 20 7 -2.1669 -0.6651 6.4466 21 14 -3.6201 -1.2365 4.1570 22 1 -3.8331 -2.7061 4.1712 23 1 -4.7962 -0.5600 4.7608 24 1 -3.4488 -0.7747 2.7560 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 3.1262 -0.7994 -1.2057 29 1 1.6053 -1.7198 -1.2953 30 1 2.4890 -1.2152 -3.7908 31 1 1.7288 0.1100 -4.4901 32 1 1.1488 0.5383 2.5436 33 1 1.8309 -1.9687 3.6504 34 1 3.2846 -0.9416 3.6508 35 1 2.2247 -2.0017 6.1008 36 1 2.8126 -0.4289 6.7958 37 1 0.1072 -1.4159 7.1887 38 1 0.5212 0.3538 7.1903 39 1 -3.0201 -0.7673 6.8967 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670672817.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:17 Heat of formation + Delta-G solvation = -36.663831 kcal Electronic energy + Delta-G solvation = -20960.812685 eV Core-core repulsion = 17711.667321 eV Total energy + Delta-G solvation = -3249.145365 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.16346 -39.11141 -37.90354 -34.12838 -34.00039 -33.84533 -32.17045 -28.44189 -27.86657 -27.25071 -23.94752 -23.36213 -21.99182 -20.68472 -19.70787 -18.98683 -17.65889 -17.36937 -16.61728 -15.97512 -15.67076 -15.53588 -15.19879 -14.68046 -14.25036 -13.81287 -13.62995 -13.39990 -12.98234 -12.88897 -12.56875 -11.89090 -11.82429 -11.40201 -11.20993 -11.12453 -11.03933 -11.01143 -10.75511 -10.50427 -10.06121 -10.04508 -9.88482 -9.74088 -9.55914 -9.25075 -8.76021 -8.55422 -6.89365 -5.78108 -3.08840 2.48631 2.95457 3.21975 3.38980 3.44407 3.46022 3.73526 4.43985 4.55715 4.87588 4.97470 5.08220 5.19620 5.39206 5.46229 5.60807 5.64657 5.66448 5.74503 5.92372 6.02656 6.09595 6.12815 6.30893 6.39419 6.40776 6.58936 6.61630 6.73451 6.91785 7.09649 7.22390 7.40664 7.55884 7.91385 7.97799 8.08289 8.56447 9.04378 9.71295 10.60494 11.39895 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018816 B = 0.005204 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.732025 B = 5379.038481 C = 6549.955134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.094 4.094 3 H 0.102 0.898 4 C -0.123 4.123 5 C 0.518 3.482 6 N -0.859 5.859 7 O -0.540 6.540 8 C 0.515 3.485 9 O -0.557 6.557 10 N -0.711 5.711 11 C 0.123 3.877 12 C 0.124 3.876 13 H 0.049 0.951 14 C -0.157 4.157 15 C 0.166 3.834 16 N -0.601 5.601 17 C -0.220 4.220 18 H 0.080 0.920 19 C -0.006 4.006 20 N -0.919 5.919 21 Si 0.905 3.095 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.280 1.280 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.402 0.598 31 H 0.399 0.601 32 H 0.404 0.596 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.032 0.968 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.258 0.400 -13.771 17.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.116 4.116 3 H 0.120 0.880 4 C -0.163 4.163 5 C 0.303 3.697 6 N -0.423 5.423 7 O -0.416 6.416 8 C 0.301 3.699 9 O -0.437 6.437 10 N -0.360 5.360 11 C -0.001 4.001 12 C 0.017 3.983 13 H 0.066 0.934 14 C -0.195 4.195 15 C 0.040 3.960 16 N -0.327 5.327 17 C -0.348 4.348 18 H 0.098 0.902 19 C -0.203 4.203 20 N -0.565 5.565 21 Si 0.736 3.264 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.205 1.205 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.230 0.770 31 H 0.230 0.770 32 H 0.239 0.761 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.990 0.299 -13.578 16.859 hybrid contribution -1.106 0.032 -0.799 1.365 sum 8.884 0.331 -14.376 16.903 Atomic orbital electron populations 1.21923 0.92099 1.02726 1.04159 1.20988 0.98509 1.00662 0.91403 0.88001 1.21451 1.03734 1.00167 0.90974 1.20770 0.78230 0.85356 0.85302 1.43902 1.60435 1.29637 1.08303 1.90729 1.39536 1.24647 1.86731 1.20491 0.80055 0.84501 0.84878 1.90645 1.39200 1.26707 1.87123 1.45966 1.52590 1.31972 1.05494 1.21745 0.97452 0.97391 0.83536 1.22497 0.87510 0.96222 0.92114 0.93383 1.23768 0.99018 1.00199 0.96563 1.22053 0.88098 0.98534 0.87275 1.46176 1.02451 1.81154 1.02927 1.18979 0.83329 1.42628 0.89869 0.90238 1.24782 0.97224 1.02352 0.95905 1.69847 1.24522 1.54926 1.07231 0.86210 0.83075 0.78091 0.79065 1.21662 1.21787 1.20504 0.89968 0.91519 0.92519 0.87989 0.88046 0.76992 0.77033 0.76105 0.91065 0.92242 0.90568 0.92727 0.92178 0.95054 0.93709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.83 37.16 0.33 -1.83 16 2 C -0.09 -1.26 2.37 -91.77 -0.22 -1.47 16 3 H 0.10 1.30 7.95 -51.93 -0.41 0.89 16 4 C -0.12 -1.36 4.52 -27.88 -0.13 -1.48 16 5 C 0.52 5.64 7.82 -10.99 -0.09 5.56 16 6 N -0.86 -5.82 8.87 31.22 0.28 -5.54 16 7 O -0.54 -7.91 14.80 5.55 0.08 -7.82 16 8 C 0.51 8.37 7.15 -10.99 -0.08 8.29 16 9 O -0.56 -10.44 15.92 5.56 0.09 -10.35 16 10 N -0.71 -11.91 5.41 -60.30 -0.33 -12.24 16 11 C 0.12 2.20 5.54 -4.05 -0.02 2.18 16 12 C 0.12 2.37 4.33 -66.86 -0.29 2.08 16 13 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 14 C -0.16 -2.82 7.86 -25.81 -0.20 -3.02 16 15 C 0.17 3.78 7.31 -2.98 -0.02 3.76 16 16 N -0.60 -14.56 3.56 -170.76 -0.61 -15.17 16 17 C -0.22 -5.89 10.49 -15.06 -0.16 -6.05 16 18 H 0.08 2.05 7.80 -52.49 -0.41 1.64 16 19 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 20 N -0.92 -26.99 11.76 55.49 0.65 -26.34 16 21 Si 0.91 22.09 29.56 -169.99 -5.02 17.06 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H 0.08 1.18 5.95 -51.93 -0.31 0.87 16 26 H 0.07 0.99 7.56 -51.92 -0.39 0.60 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.10 1.03 7.95 -51.93 -0.41 0.62 16 29 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.40 1.61 8.83 -40.82 -0.36 1.25 16 31 H 0.40 2.30 8.93 -40.82 -0.36 1.93 16 32 H 0.40 6.59 7.89 -40.82 -0.32 6.27 16 33 H 0.07 1.45 8.14 -51.92 -0.42 1.02 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 1.51 7.69 -51.93 -0.40 1.11 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 326.90 15.07 4.93 4.93 Total: -1.00 -33.78 326.90 -6.80 -40.58 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.90 Total: 7.13 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -0.97 Total: 7.76 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.00 Total: -59.29 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.17 Total: -18.17 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.78 -6.80 -40.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670672817.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.920 kcal (2) G-P(sol) polarization free energy of solvation -33.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds