Wall clock time and date at job start Mon Mar 30 2020 01:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47465 * 2 1 4 4 C 1.53005 * 109.46912 * 240.00270 * 2 1 3 5 5 C 1.50696 * 109.47168 * 64.99868 * 4 2 1 6 6 N 1.34771 * 120.00352 * 179.97438 * 5 4 2 7 7 O 1.21288 * 119.99943 * 0.02562 * 5 4 2 8 8 C 1.50698 * 109.47290 * 120.00511 * 2 1 3 9 9 O 1.21277 * 120.00279 * 119.99361 * 8 2 1 10 10 N 1.34780 * 119.99918 * 299.99845 * 8 2 1 11 11 C 1.46496 * 120.00161 * 179.97438 * 10 8 2 12 12 C 1.52997 * 109.47383 * 179.97438 * 11 10 8 13 13 H 1.08998 * 112.96317 * 306.67620 * 12 11 10 14 14 C 1.53944 * 113.77339 * 174.99986 * 12 11 10 15 15 C 1.53944 * 86.29119 * 222.09377 * 14 12 11 16 16 N 1.47574 * 86.11966 * 23.60440 * 15 14 12 17 17 C 1.36939 * 134.49573 * 155.35574 * 16 15 14 18 18 H 1.07999 * 120.00018 * 187.05988 * 17 16 15 19 19 C 1.38807 * 119.99398 * 7.06718 * 17 16 15 20 20 N 1.31621 * 120.00331 * 7.61314 * 19 17 16 21 21 Si 1.86805 * 119.99748 * 187.61354 * 19 17 16 22 22 H 1.48496 * 109.47257 * 94.81136 * 21 19 17 23 23 H 1.48504 * 109.47159 * 214.81327 * 21 19 17 24 24 H 1.48503 * 109.47225 * 334.80917 * 21 19 17 25 25 H 1.09004 * 109.47045 * 59.99581 * 1 2 3 26 26 H 1.09009 * 109.47156 * 299.99827 * 1 2 3 27 27 H 1.09001 * 109.47465 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46997 * 184.99870 * 4 2 1 29 29 H 1.09004 * 109.47011 * 305.00029 * 4 2 1 30 30 H 0.97007 * 119.99665 * 0.02562 * 6 5 4 31 31 H 0.97002 * 120.00531 * 180.02562 * 6 5 4 32 32 H 0.96997 * 119.99843 * 0.02562 * 10 8 2 33 33 H 1.09008 * 109.47219 * 300.00091 * 11 10 8 34 34 H 1.08997 * 109.47132 * 59.99667 * 11 10 8 35 35 H 1.09007 * 113.74069 * 336.43752 * 14 12 11 36 36 H 1.08997 * 113.74105 * 107.63644 * 14 12 11 37 37 H 1.08997 * 113.76801 * 137.90967 * 15 14 12 38 38 H 1.08999 * 113.76526 * 269.18970 * 15 14 12 39 39 H 0.97006 * 119.99777 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 7 1.9851 -0.3912 -3.7001 7 8 1.0116 1.0875 -2.3632 8 6 2.0323 -0.7105 1.2304 9 8 2.7295 -1.6966 1.1190 10 7 1.7068 -0.2501 2.4545 11 6 2.1946 -0.9411 3.6506 12 6 1.6853 -0.2195 4.8999 13 1 1.9190 0.8451 4.9011 14 6 2.0394 -0.9338 6.2169 15 6 0.6060 -0.5989 6.6675 16 7 0.2793 -0.5227 5.2304 17 6 -0.8678 -0.6730 4.4976 18 1 -0.8226 -0.6773 3.4186 19 6 -2.0885 -0.8197 5.1419 20 7 -2.1669 -0.6651 6.4466 21 14 -3.6201 -1.2365 4.1570 22 1 -3.8331 -2.7061 4.1712 23 1 -4.7962 -0.5600 4.7608 24 1 -3.4488 -0.7747 2.7560 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 3.1262 -0.7994 -1.2057 29 1 1.6053 -1.7198 -1.2953 30 1 2.4890 -1.2152 -3.7908 31 1 1.7288 0.1100 -4.4901 32 1 1.1488 0.5383 2.5436 33 1 1.8309 -1.9687 3.6504 34 1 3.2846 -0.9416 3.6508 35 1 2.2247 -2.0017 6.1008 36 1 2.8126 -0.4289 6.7958 37 1 0.1072 -1.4159 7.1887 38 1 0.5212 0.3538 7.1903 39 1 -3.0201 -0.7673 6.8967 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670672817.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:16 Heat of formation + Delta-G solvation = -63.406098 kcal Electronic energy + Delta-G solvation = -20961.972317 eV Core-core repulsion = 17711.667321 eV Total energy + Delta-G solvation = -3250.304996 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.27824 -40.27249 -39.50459 -35.50612 -35.15256 -34.61776 -34.17172 -29.95264 -29.52870 -28.49155 -25.28184 -25.19524 -23.45561 -21.70323 -21.05867 -20.50855 -18.85098 -18.35614 -18.05298 -17.13489 -16.99959 -16.96078 -16.59767 -15.98171 -15.77721 -15.46301 -14.98414 -14.78862 -14.30853 -14.13833 -13.77739 -13.45315 -13.21288 -13.00176 -12.97174 -12.66253 -12.62138 -12.25702 -12.20170 -12.10607 -11.84960 -11.49684 -11.31634 -10.99457 -10.79838 -10.69792 -10.53563 -9.96748 -8.87357 -7.87939 -5.17398 1.44065 1.45226 1.52903 1.64634 1.66448 2.17141 2.48129 2.76435 3.34847 3.39986 3.57386 3.87372 3.96604 4.01752 4.15734 4.21884 4.38287 4.42136 4.64639 4.67381 4.72853 4.74719 4.89715 4.93215 5.05670 5.07537 5.13797 5.27688 5.34163 5.50772 5.60561 5.76121 5.94978 5.97582 6.46874 6.59028 6.96839 7.24753 7.37991 7.66829 8.62349 9.30524 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018816 B = 0.005204 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.732025 B = 5379.038481 C = 6549.955134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 H 0.110 0.890 4 C -0.119 4.119 5 C 0.519 3.481 6 N -0.837 5.837 7 O -0.582 6.582 8 C 0.516 3.484 9 O -0.581 6.581 10 N -0.713 5.713 11 C 0.133 3.867 12 C 0.129 3.871 13 H 0.066 0.934 14 C -0.129 4.129 15 C 0.156 3.844 16 N -0.628 5.628 17 C -0.211 4.211 18 H 0.086 0.914 19 C -0.068 4.068 20 N -0.954 5.954 21 Si 0.961 3.039 22 H -0.294 1.294 23 H -0.298 1.298 24 H -0.265 1.265 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.418 0.582 31 H 0.408 0.592 32 H 0.406 0.594 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.027 0.973 38 H 0.021 0.979 39 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.939 0.431 -15.577 19.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.128 0.872 4 C -0.159 4.159 5 C 0.305 3.695 6 N -0.401 5.401 7 O -0.462 6.462 8 C 0.303 3.697 9 O -0.461 6.461 10 N -0.362 5.362 11 C 0.008 3.992 12 C 0.023 3.977 13 H 0.083 0.917 14 C -0.168 4.168 15 C 0.031 3.969 16 N -0.354 5.354 17 C -0.340 4.340 18 H 0.103 0.897 19 C -0.261 4.261 20 N -0.604 5.604 21 Si 0.791 3.209 22 H -0.222 1.222 23 H -0.225 1.225 24 H -0.190 1.190 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.133 0.867 29 H 0.124 0.876 30 H 0.249 0.751 31 H 0.240 0.760 32 H 0.242 0.758 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.045 0.955 38 H 0.039 0.961 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.726 0.310 -15.445 19.394 hybrid contribution -1.527 0.009 -0.276 1.551 sum 10.199 0.319 -15.721 18.742 Atomic orbital electron populations 1.21854 0.92754 1.02115 1.03614 1.20949 0.97760 1.01081 0.91065 0.87161 1.21415 1.04452 0.99991 0.90039 1.20698 0.77854 0.84728 0.86222 1.43703 1.59174 1.29933 1.07321 1.90719 1.41705 1.26440 1.87361 1.20925 0.79361 0.84092 0.85286 1.90632 1.40306 1.27763 1.87446 1.45995 1.52684 1.31982 1.05564 1.21541 0.98544 0.95693 0.83445 1.22668 0.84334 0.97294 0.93355 0.91651 1.23556 0.96755 1.00898 0.95560 1.22032 0.91277 0.96988 0.86594 1.46534 1.03724 1.81408 1.03747 1.19323 0.84266 1.39983 0.90433 0.89668 1.25488 0.99971 1.03878 0.96763 1.70008 1.24417 1.57357 1.08619 0.85305 0.79865 0.77250 0.78515 1.22157 1.22510 1.18974 0.89966 0.92555 0.93102 0.86723 0.87571 0.75112 0.76049 0.75839 0.93696 0.89968 0.89995 0.88777 0.95470 0.96073 0.94615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 8.83 71.98 0.64 -3.36 16 2 C -0.09 -2.18 2.37 -11.54 -0.03 -2.21 16 3 H 0.11 2.62 7.95 -2.39 -0.02 2.60 16 4 C -0.12 -2.36 4.52 29.85 0.13 -2.23 16 5 C 0.52 10.24 7.82 87.66 0.69 10.92 16 6 N -0.84 -9.11 8.87 -173.54 -1.54 -10.65 16 7 O -0.58 -16.24 14.80 -3.05 -0.05 -16.29 16 8 C 0.52 15.89 7.15 87.66 0.63 16.51 16 9 O -0.58 -20.67 15.92 -3.02 -0.05 -20.72 16 10 N -0.71 -22.68 5.41 -463.07 -2.50 -25.19 16 11 C 0.13 4.46 5.54 86.38 0.48 4.94 16 12 C 0.13 4.68 4.33 45.09 0.20 4.88 16 13 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 14 C -0.13 -4.35 7.86 31.25 0.25 -4.10 16 15 C 0.16 7.16 7.31 86.48 0.63 7.79 16 16 N -0.63 -30.19 3.56 -694.16 -2.47 -32.66 16 17 C -0.21 -11.30 10.49 84.03 0.88 -10.41 16 18 H 0.09 4.34 7.80 -2.91 -0.02 4.32 16 19 C -0.07 -3.85 5.49 84.86 0.47 -3.39 16 20 N -0.95 -57.63 11.76 21.65 0.25 -57.37 16 21 Si 0.96 46.03 29.56 68.60 2.03 48.06 16 22 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 23 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 H 0.08 2.29 5.95 -2.38 -0.01 2.28 16 26 H 0.06 1.63 7.56 -2.38 -0.02 1.61 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.11 2.01 7.95 -2.39 -0.02 1.99 16 29 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.42 2.05 8.83 -92.70 -0.82 1.23 16 31 H 0.41 3.65 8.93 -92.71 -0.83 2.82 16 32 H 0.41 12.65 7.89 -92.71 -0.73 11.91 16 33 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.08 2.69 8.10 -2.38 -0.02 2.67 16 36 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.03 1.40 7.69 -2.39 -0.02 1.38 16 38 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.24 14.53 8.31 -92.70 -0.77 13.76 16 Total: -1.00 -73.39 326.90 -0.67 -74.06 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -1.29 Total: 21.41 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 4.95 Total: 19.35 kcal Atomic # 7 Polarization: -119.61 SS G_CDS: -6.26 Total: -125.87 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -0.09 Total: -37.00 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -73.39 -0.67 -74.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670672817.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.655 kcal (2) G-P(sol) polarization free energy of solvation -73.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds