Wall clock time and date at job start Mon Mar 30 2020 01:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46759 * 2 1 4 4 N 1.46499 * 109.47275 * 239.99915 * 2 1 3 5 5 C 1.36942 * 120.00015 * 84.99743 * 4 2 1 6 6 H 1.07998 * 119.99727 * 359.97438 * 5 4 2 7 7 C 1.38808 * 119.99921 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00168 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00049 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47016 * 359.97438 * 9 7 5 11 11 H 1.48488 * 109.47326 * 119.99595 * 9 7 5 12 12 H 1.48508 * 109.46714 * 239.99884 * 9 7 5 13 13 C 1.52997 * 109.47178 * 119.99851 * 2 1 3 14 14 H 1.08996 * 109.49524 * 180.02562 * 13 2 1 15 15 C 1.53041 * 109.49617 * 300.16280 * 13 2 1 16 16 C 1.53046 * 109.53773 * 181.31996 * 15 13 2 17 17 C 1.53195 * 109.30917 * 298.63229 * 16 15 13 18 18 N 1.46928 * 108.77296 * 54.63760 * 17 16 15 19 19 C 1.34776 * 120.63195 * 126.41311 * 18 17 16 20 20 O 1.21348 * 120.00228 * 173.05994 * 19 18 17 21 21 C 1.49451 * 119.99858 * 353.06640 * 19 18 17 22 22 N 1.34775 * 120.00450 * 173.37803 * 21 19 18 23 23 O 1.21350 * 120.00152 * 353.37327 * 21 19 18 24 24 C 1.46923 * 118.73814 * 306.38462 * 18 17 16 25 25 H 1.08999 * 109.47188 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47712 * 60.00287 * 1 2 3 27 27 H 1.09006 * 109.47079 * 300.00106 * 1 2 3 28 28 H 0.96993 * 120.00200 * 265.00264 * 4 2 1 29 29 H 0.96996 * 120.00002 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.45977 * 301.33514 * 15 13 2 31 31 H 1.08997 * 109.46133 * 61.29643 * 15 13 2 32 32 H 1.09000 * 109.49634 * 178.68336 * 16 15 13 33 33 H 1.08997 * 109.52398 * 58.59811 * 16 15 13 34 34 H 1.08998 * 109.58773 * 294.85053 * 17 16 15 35 35 H 1.08998 * 109.69852 * 174.49270 * 17 16 15 36 36 H 0.97006 * 119.99289 * 359.97438 * 22 21 19 37 37 H 0.96994 * 120.00487 * 179.97438 * 22 21 19 38 38 H 1.08993 * 109.59202 * 293.82435 * 24 18 17 39 39 H 1.09002 * 109.58318 * 173.39840 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3758 6 1 1.8918 1.0403 -2.4244 7 6 2.6113 -0.6620 -3.5092 8 7 2.9244 -1.9391 -3.4501 9 14 2.7904 0.2700 -5.1182 10 1 2.3764 1.6824 -4.9208 11 1 4.2072 0.2263 -5.5606 12 1 1.9292 -0.3579 -6.1524 13 6 2.0400 -0.7212 1.2492 14 1 3.1300 -0.7210 1.2498 15 6 1.5268 -0.0025 2.4992 16 6 2.0634 -0.7037 3.7493 17 6 1.5533 -2.1480 3.7783 18 7 1.9182 -2.8037 2.5151 19 6 2.5958 -3.9688 2.5168 20 8 2.7815 -4.5642 1.4759 21 6 3.1182 -4.5274 3.8008 22 7 3.6776 -5.7534 3.8243 23 8 3.0390 -3.8771 4.8222 24 6 1.5297 -2.1656 1.2499 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 2.2490 -1.6317 -1.1526 29 1 3.2471 -2.3965 -4.2422 30 1 1.8682 1.0326 2.4888 31 1 0.4372 -0.0253 2.5095 32 1 1.7166 -0.1775 4.6386 33 1 3.1531 -0.7031 3.7279 34 1 0.4692 -2.1505 3.8915 35 1 2.0091 -2.6819 4.6121 36 1 3.7407 -6.2733 3.0078 37 1 4.0170 -6.1158 4.6575 38 1 0.4437 -2.1695 1.1570 39 1 1.9719 -2.7098 0.4154 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715458730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:18 Heat of formation + Delta-G solvation = -47.386493 kcal Electronic energy + Delta-G solvation = -21528.365924 eV Core-core repulsion = 18278.755590 eV Total energy + Delta-G solvation = -3249.610334 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.91689 -38.89427 -37.79600 -35.54142 -33.93517 -32.82150 -31.83006 -29.77675 -27.95939 -26.37631 -24.58331 -23.47154 -23.14316 -21.10700 -20.12817 -18.66398 -17.98001 -17.20738 -17.11497 -16.24292 -15.71830 -15.26202 -14.88874 -14.78107 -14.32201 -13.90437 -13.76079 -13.56718 -13.12576 -12.90526 -12.65343 -12.37950 -11.92004 -11.73615 -11.46442 -10.96440 -10.85881 -10.67007 -10.59917 -10.43543 -10.22808 -10.18796 -10.11164 -9.86525 -9.53276 -9.07863 -8.87509 -8.50377 -6.91549 -5.70866 -3.00294 1.35930 2.46424 3.18042 3.46228 3.51545 3.54011 3.67138 4.35301 4.61983 4.98123 5.08338 5.14778 5.27456 5.49087 5.62306 5.63521 5.78805 5.83667 5.91024 5.95162 6.02659 6.13928 6.17798 6.26625 6.38031 6.40786 6.47010 6.60098 6.64702 6.76090 6.78591 6.91235 7.14633 7.35596 7.72900 7.75184 7.99381 8.47079 9.58038 10.15876 10.49977 11.51528 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023238 B = 0.005152 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.633954 B = 5433.312216 C = 6359.109891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.050 0.950 4 N -0.726 5.726 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.930 5.930 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.103 4.103 14 H 0.073 0.927 15 C -0.117 4.117 16 C -0.128 4.128 17 C 0.048 3.952 18 N -0.574 5.574 19 C 0.498 3.502 20 O -0.513 6.513 21 C 0.519 3.481 22 N -0.820 5.820 23 O -0.516 6.516 24 C 0.111 3.889 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.039 0.961 28 H 0.384 0.616 29 H 0.254 0.746 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.151 0.849 36 H 0.416 0.584 37 H 0.409 0.591 38 H 0.076 0.924 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.984 -3.663 17.921 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.069 3.931 3 H 0.068 0.932 4 N -0.368 5.368 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.123 4.123 14 H 0.092 0.908 15 C -0.155 4.155 16 C -0.166 4.166 17 C -0.073 4.073 18 N -0.306 5.306 19 C 0.279 3.721 20 O -0.389 6.389 21 C 0.300 3.700 22 N -0.385 5.385 23 O -0.394 6.394 24 C -0.010 4.010 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.219 0.781 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.167 0.833 36 H 0.247 0.753 37 H 0.241 0.759 38 H 0.094 0.906 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.005 -3.313 17.740 18.158 hybrid contribution 0.303 -0.156 -1.082 1.134 sum -1.702 -3.468 16.659 17.101 Atomic orbital electron populations 1.22572 0.99468 1.00855 1.00033 1.20183 0.91866 0.95342 0.85660 0.93184 1.42525 1.78148 1.10790 1.05341 1.19274 1.36457 0.93874 0.87337 0.91165 1.24741 1.02245 0.95948 0.98014 1.69682 1.50886 1.08614 1.28707 0.86155 0.77267 0.78775 0.84219 1.20613 1.21950 1.21944 1.21777 1.00966 0.93925 0.95593 0.90839 1.21670 1.00869 0.99225 0.93746 1.21839 1.01286 0.95171 0.98340 1.23199 1.00808 0.95175 0.88099 1.48059 1.52751 1.20688 1.09151 1.19873 0.80550 0.82740 0.88952 1.90832 1.56782 1.58481 1.32826 1.20411 0.78029 0.82183 0.89385 1.43582 1.61387 1.17695 1.15878 1.90359 1.56002 1.57558 1.35438 1.22001 1.00369 0.93562 0.85041 0.93341 0.92858 0.94165 0.78113 0.93571 0.91693 0.91460 0.91027 0.91750 0.92018 0.83286 0.75325 0.75884 0.90602 0.87979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 8.79 37.16 0.33 -2.66 16 2 C 0.18 3.53 2.72 -67.93 -0.19 3.35 16 3 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 4 N -0.73 -18.24 5.04 -53.43 -0.27 -18.51 16 5 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -28.68 13.06 55.49 0.72 -27.96 16 9 Si 0.90 22.67 29.55 -169.99 -5.02 17.65 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 C -0.10 -1.71 2.33 -90.50 -0.21 -1.92 16 14 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 15 C -0.12 -1.53 4.77 -26.69 -0.13 -1.66 16 16 C -0.13 -1.52 6.08 -26.61 -0.16 -1.68 16 17 C 0.05 0.60 6.27 -3.71 -0.02 0.58 16 18 N -0.57 -8.62 2.97 -173.28 -0.51 -9.14 16 19 C 0.50 7.68 7.74 -11.58 -0.09 7.59 16 20 O -0.51 -9.44 15.94 5.50 0.09 -9.35 16 21 C 0.52 6.41 8.05 -11.59 -0.09 6.32 16 22 N -0.82 -6.89 8.87 30.90 0.27 -6.62 16 23 O -0.52 -6.88 13.94 5.50 0.08 -6.80 16 24 C 0.11 1.90 5.19 -3.71 -0.02 1.88 16 25 H 0.05 0.86 6.32 -51.93 -0.33 0.53 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.04 0.58 6.46 -51.93 -0.34 0.25 16 28 H 0.38 10.36 6.16 -40.82 -0.25 10.11 16 29 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.83 6.50 -51.93 -0.34 0.50 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.15 1.89 3.78 -56.75 -0.21 1.67 16 36 H 0.42 3.19 8.32 -40.82 -0.34 2.85 16 37 H 0.41 2.33 8.93 -40.82 -0.36 1.97 16 38 H 0.08 1.24 6.18 -51.93 -0.32 0.92 16 39 H 0.10 2.11 5.64 -51.93 -0.29 1.81 16 LS Contribution 309.43 15.07 4.66 4.66 Total: -1.00 -32.99 309.43 -6.10 -39.09 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -5.29 Total: 12.48 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -0.83 Total: 4.50 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: 0.21 Total: -62.23 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.16 Total: -16.15 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.99 -6.10 -39.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715458730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.297 kcal (2) G-P(sol) polarization free energy of solvation -32.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds