Wall clock time and date at job start Mon Mar 30 2020 01:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46759 * 2 1 4 4 N 1.46499 * 109.47275 * 239.99915 * 2 1 3 5 5 C 1.36942 * 120.00015 * 84.99743 * 4 2 1 6 6 H 1.07998 * 119.99727 * 359.97438 * 5 4 2 7 7 C 1.38808 * 119.99921 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00168 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00049 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47016 * 359.97438 * 9 7 5 11 11 H 1.48488 * 109.47326 * 119.99595 * 9 7 5 12 12 H 1.48508 * 109.46714 * 239.99884 * 9 7 5 13 13 C 1.52997 * 109.47178 * 119.99851 * 2 1 3 14 14 H 1.08996 * 109.49524 * 180.02562 * 13 2 1 15 15 C 1.53041 * 109.49617 * 300.16280 * 13 2 1 16 16 C 1.53046 * 109.53773 * 181.31996 * 15 13 2 17 17 C 1.53195 * 109.30917 * 298.63229 * 16 15 13 18 18 N 1.46928 * 108.77296 * 54.63760 * 17 16 15 19 19 C 1.34776 * 120.63195 * 126.41311 * 18 17 16 20 20 O 1.21348 * 120.00228 * 173.05994 * 19 18 17 21 21 C 1.49451 * 119.99858 * 353.06640 * 19 18 17 22 22 N 1.34775 * 120.00450 * 173.37803 * 21 19 18 23 23 O 1.21350 * 120.00152 * 353.37327 * 21 19 18 24 24 C 1.46923 * 118.73814 * 306.38462 * 18 17 16 25 25 H 1.08999 * 109.47188 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47712 * 60.00287 * 1 2 3 27 27 H 1.09006 * 109.47079 * 300.00106 * 1 2 3 28 28 H 0.96993 * 120.00200 * 265.00264 * 4 2 1 29 29 H 0.96996 * 120.00002 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.45977 * 301.33514 * 15 13 2 31 31 H 1.08997 * 109.46133 * 61.29643 * 15 13 2 32 32 H 1.09000 * 109.49634 * 178.68336 * 16 15 13 33 33 H 1.08997 * 109.52398 * 58.59811 * 16 15 13 34 34 H 1.08998 * 109.58773 * 294.85053 * 17 16 15 35 35 H 1.08998 * 109.69852 * 174.49270 * 17 16 15 36 36 H 0.97006 * 119.99289 * 359.97438 * 22 21 19 37 37 H 0.96994 * 120.00487 * 179.97438 * 22 21 19 38 38 H 1.08993 * 109.59202 * 293.82435 * 24 18 17 39 39 H 1.09002 * 109.58318 * 173.39840 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3758 6 1 1.8918 1.0403 -2.4244 7 6 2.6113 -0.6620 -3.5092 8 7 2.9244 -1.9391 -3.4501 9 14 2.7904 0.2700 -5.1182 10 1 2.3764 1.6824 -4.9208 11 1 4.2072 0.2263 -5.5606 12 1 1.9292 -0.3579 -6.1524 13 6 2.0400 -0.7212 1.2492 14 1 3.1300 -0.7210 1.2498 15 6 1.5268 -0.0025 2.4992 16 6 2.0634 -0.7037 3.7493 17 6 1.5533 -2.1480 3.7783 18 7 1.9182 -2.8037 2.5151 19 6 2.5958 -3.9688 2.5168 20 8 2.7815 -4.5642 1.4759 21 6 3.1182 -4.5274 3.8008 22 7 3.6776 -5.7534 3.8243 23 8 3.0390 -3.8771 4.8222 24 6 1.5297 -2.1656 1.2499 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 2.2490 -1.6317 -1.1526 29 1 3.2471 -2.3965 -4.2422 30 1 1.8682 1.0326 2.4888 31 1 0.4372 -0.0253 2.5095 32 1 1.7166 -0.1775 4.6386 33 1 3.1531 -0.7031 3.7279 34 1 0.4692 -2.1505 3.8915 35 1 2.0091 -2.6819 4.6121 36 1 3.7407 -6.2733 3.0078 37 1 4.0170 -6.1158 4.6575 38 1 0.4437 -2.1695 1.1570 39 1 1.9719 -2.7098 0.4154 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715458730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:17 Heat of formation + Delta-G solvation = -73.775752 kcal Electronic energy + Delta-G solvation = -21529.510248 eV Core-core repulsion = 18278.755590 eV Total energy + Delta-G solvation = -3250.754658 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.04176 -40.05447 -39.07322 -37.04965 -35.02335 -34.38156 -33.22254 -31.45253 -29.55327 -27.53935 -26.29636 -24.79760 -24.55367 -22.34802 -21.28432 -20.03668 -19.35117 -18.78367 -18.24876 -17.42005 -16.84674 -16.70480 -16.39715 -16.04756 -15.55589 -15.43374 -15.22212 -14.96522 -14.51887 -14.31091 -13.95270 -13.85777 -13.32705 -13.07260 -12.88285 -12.83512 -12.62687 -12.18533 -12.00805 -11.82390 -11.80325 -11.77441 -11.43574 -11.19783 -10.95904 -10.93800 -10.15835 -9.73221 -8.99734 -7.91824 -5.20812 0.27015 1.38622 1.46507 1.47584 1.57486 2.06625 2.56961 2.65633 3.40553 3.41762 3.73637 3.88055 3.95301 4.07808 4.17741 4.35317 4.42052 4.62501 4.65608 4.71891 4.83466 4.87905 4.97156 5.06803 5.12005 5.14231 5.23523 5.33562 5.36724 5.46742 5.55203 5.67765 5.78501 5.88749 6.21558 6.30047 6.71604 6.98181 7.35304 8.13064 8.34534 9.31981 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023238 B = 0.005152 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.633954 B = 5433.312216 C = 6359.109891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.173 3.827 3 H 0.048 0.952 4 N -0.741 5.741 5 C -0.235 4.235 6 H 0.078 0.922 7 C -0.080 4.080 8 N -0.973 5.973 9 Si 0.971 3.029 10 H -0.264 1.264 11 H -0.296 1.296 12 H -0.295 1.295 13 C -0.091 4.091 14 H 0.047 0.953 15 C -0.110 4.110 16 C -0.123 4.123 17 C 0.045 3.955 18 N -0.574 5.574 19 C 0.487 3.513 20 O -0.554 6.554 21 C 0.526 3.474 22 N -0.795 5.795 23 O -0.524 6.524 24 C 0.119 3.881 25 H 0.044 0.956 26 H 0.034 0.966 27 H 0.080 0.920 28 H 0.371 0.629 29 H 0.249 0.751 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.154 0.846 36 H 0.421 0.579 37 H 0.426 0.574 38 H 0.084 0.916 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.865 -2.466 20.058 20.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.064 3.936 3 H 0.066 0.934 4 N -0.381 5.381 5 C -0.367 4.367 6 H 0.096 0.904 7 C -0.271 4.271 8 N -0.624 5.624 9 Si 0.801 3.199 10 H -0.188 1.188 11 H -0.223 1.223 12 H -0.222 1.222 13 C -0.111 4.111 14 H 0.066 0.934 15 C -0.148 4.148 16 C -0.161 4.161 17 C -0.074 4.074 18 N -0.306 5.306 19 C 0.269 3.731 20 O -0.433 6.433 21 C 0.305 3.695 22 N -0.362 5.362 23 O -0.403 6.403 24 C -0.004 4.004 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.099 0.901 28 H 0.203 0.797 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.170 0.830 36 H 0.253 0.747 37 H 0.262 0.738 38 H 0.102 0.898 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.901 -2.087 19.951 20.269 hybrid contribution 0.572 -0.531 -1.664 1.838 sum -2.328 -2.617 18.287 18.620 Atomic orbital electron populations 1.22403 0.97261 1.00950 1.01116 1.20458 0.93271 0.94926 0.84925 0.93401 1.42781 1.78501 1.10380 1.06481 1.19691 1.34441 0.94215 0.88317 0.90433 1.25563 1.03218 0.96824 1.01538 1.69860 1.52946 1.10382 1.29217 0.85096 0.76642 0.78277 0.79912 1.18786 1.22349 1.22247 1.21609 0.99342 0.93927 0.96257 0.93422 1.21649 1.01760 0.99340 0.92011 1.21833 1.00549 0.94795 0.98900 1.23425 1.02090 0.95383 0.86529 1.48179 1.52368 1.20674 1.09347 1.20542 0.80046 0.82637 0.89830 1.90812 1.58259 1.59650 1.34563 1.19790 0.78697 0.83197 0.87781 1.43412 1.59551 1.16147 1.17050 1.90355 1.56938 1.58095 1.34962 1.21717 1.00341 0.93348 0.84949 0.93739 0.94657 0.90108 0.79685 0.94245 0.90536 0.89775 0.87688 0.92991 0.90083 0.82974 0.74667 0.73828 0.89763 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.31 8.79 71.98 0.63 -4.68 16 2 C 0.17 6.72 2.72 44.99 0.12 6.84 16 3 H 0.05 1.88 8.08 -2.39 -0.02 1.87 16 4 N -0.74 -38.21 5.04 -322.95 -1.63 -39.83 16 5 C -0.23 -13.28 9.93 84.03 0.83 -12.44 16 6 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 7 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 8 N -0.97 -62.10 13.06 21.65 0.28 -61.82 16 9 Si 0.97 47.36 29.55 68.60 2.03 49.39 16 10 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 12 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 13 C -0.09 -3.02 2.33 -10.72 -0.02 -3.04 16 14 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 15 C -0.11 -2.55 4.77 30.62 0.15 -2.40 16 16 C -0.12 -2.52 6.08 30.68 0.19 -2.33 16 17 C 0.05 1.02 6.27 86.36 0.54 1.56 16 18 N -0.57 -17.01 2.97 -820.49 -2.44 -19.45 16 19 C 0.49 15.17 7.74 87.27 0.68 15.84 16 20 O -0.55 -21.28 15.94 -3.24 -0.05 -21.33 16 21 C 0.53 12.40 8.05 87.27 0.70 13.10 16 22 N -0.80 -12.19 8.87 -174.50 -1.55 -13.74 16 23 O -0.52 -12.99 13.94 -3.25 -0.05 -13.03 16 24 C 0.12 4.10 5.19 86.36 0.45 4.55 16 25 H 0.04 1.52 6.32 -2.39 -0.02 1.51 16 26 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.08 2.06 6.46 -2.38 -0.02 2.05 16 28 H 0.37 21.02 6.16 -92.71 -0.57 20.45 16 29 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 1.71 6.50 -2.39 -0.02 1.70 16 32 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.15 3.47 3.78 -78.71 -0.30 3.17 16 36 H 0.42 6.07 8.32 -92.70 -0.77 5.30 16 37 H 0.43 3.91 8.93 -92.71 -0.83 3.08 16 38 H 0.08 2.73 6.18 -2.39 -0.01 2.71 16 39 H 0.06 2.54 5.64 -2.39 -0.01 2.53 16 Total: -1.00 -73.68 309.43 -0.02 -73.70 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: -1.35 Total: 33.36 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 4.73 Total: 12.75 kcal Atomic # 7 Polarization: -129.51 SS G_CDS: -5.33 Total: -134.85 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -0.10 Total: -34.36 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -73.68 -0.02 -73.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715458730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.076 kcal (2) G-P(sol) polarization free energy of solvation -73.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds