Wall clock time and date at job start Mon Mar 30 2020 01:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47430 * 2 1 4 4 C 1.53000 * 109.47394 * 120.00262 * 2 1 3 5 5 C 1.53004 * 109.47256 * 184.99820 * 4 2 1 6 6 N 1.46499 * 109.47482 * 179.97438 * 5 4 2 7 7 C 1.36929 * 120.00255 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99984 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00040 * 180.02562 * 7 6 5 10 10 N 1.31623 * 120.00065 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00059 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46994 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47324 * 119.99922 * 11 9 7 14 14 H 1.48499 * 109.47121 * 240.00064 * 11 9 7 15 15 N 1.46500 * 109.47107 * 240.00129 * 2 1 3 16 16 C 1.34782 * 119.99948 * 84.99727 * 15 2 1 17 17 O 1.21278 * 119.99918 * 0.02562 * 16 15 2 18 18 C 1.50701 * 119.99818 * 180.02562 * 16 15 2 19 19 H 1.09002 * 110.21677 * 40.70095 * 18 16 15 20 20 C 1.54480 * 110.24535 * 278.77063 * 18 16 15 21 21 C 1.54765 * 101.70376 * 266.27601 * 20 18 16 22 22 C 1.51285 * 104.23466 * 335.30457 * 21 20 18 23 23 O 1.21284 * 124.94280 * 196.17174 * 22 21 20 24 24 N 1.34423 * 110.11634 * 16.18786 * 22 21 20 25 25 H 1.08998 * 109.46744 * 299.99347 * 1 2 3 26 26 H 1.08992 * 109.47357 * 59.99669 * 1 2 3 27 27 H 1.09000 * 109.46988 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46752 * 304.99497 * 4 2 1 29 29 H 1.08999 * 109.47412 * 64.99882 * 4 2 1 30 30 H 1.08996 * 109.47289 * 299.99959 * 5 4 2 31 31 H 1.09009 * 109.46934 * 59.99740 * 5 4 2 32 32 H 0.97001 * 119.99737 * 0.02562 * 6 5 4 33 33 H 0.97000 * 119.99960 * 180.02562 * 10 9 7 34 34 H 0.96998 * 120.00349 * 265.00098 * 15 2 1 35 35 H 1.08994 * 110.97067 * 24.44862 * 20 18 16 36 36 H 1.08997 * 110.96887 * 148.21201 * 20 18 16 37 37 H 1.08999 * 110.51900 * 216.58825 * 21 20 18 38 38 H 1.08995 * 110.53135 * 94.02440 * 21 20 18 39 39 H 0.96996 * 124.35087 * 180.42562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6134 1.3136 6 7 4.0533 -1.3035 2.5100 7 6 5.3953 -1.3402 2.7794 8 1 6.0938 -0.8600 2.1100 9 6 5.8581 -1.9945 3.9127 10 7 5.0069 -2.5802 4.7282 11 14 7.6889 -2.0440 4.2806 12 1 8.4273 -1.3170 3.2170 13 1 7.9477 -1.3991 5.5929 14 1 8.1471 -3.4559 4.3240 15 7 2.0183 -0.6906 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8589 1.1586 -2.4115 18 6 2.6487 -0.7287 -3.5878 19 1 2.2112 -1.7250 -3.6523 20 6 4.1904 -0.8228 -3.5595 21 6 4.5965 0.4342 -4.3659 22 6 3.3981 0.7151 -5.2456 23 8 3.4055 1.4377 -6.2196 24 7 2.3239 0.0474 -4.7904 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.6055 -0.2617 2.1369 29 1 1.7517 -1.7716 1.2056 30 1 3.9995 -1.0728 0.4259 31 1 3.8533 0.4370 1.3572 32 1 3.4260 -1.7350 3.1110 33 1 5.3303 -3.0371 5.5204 34 1 2.2490 -1.6317 -1.1527 35 1 4.5657 -0.7703 -2.5376 36 1 4.5349 -1.7310 -4.0539 37 1 5.4771 0.2296 -4.9747 38 1 4.7834 1.2739 -3.6965 39 1 1.4468 0.0749 -5.2037 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715697112.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:21 Heat of formation + Delta-G solvation = -70.617221 kcal Electronic energy + Delta-G solvation = -20632.339267 eV Core-core repulsion = 17381.721573 eV Total energy + Delta-G solvation = -3250.617694 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.05558 -39.26842 -36.88705 -36.05042 -34.43046 -32.17507 -31.53726 -30.80265 -28.19634 -27.92380 -24.17662 -23.32611 -21.76327 -21.01169 -20.70278 -20.47815 -17.89655 -17.71713 -17.05604 -16.40932 -15.51014 -15.32366 -14.91654 -14.65615 -14.09321 -13.94127 -13.75474 -13.67306 -13.42492 -13.37219 -12.93777 -12.90266 -12.48959 -11.98268 -11.77035 -11.56863 -11.28116 -11.09262 -10.86527 -10.72497 -10.62776 -10.38484 -10.07417 -10.06743 -9.76451 -9.25094 -9.12905 -8.92449 -6.98604 -5.82414 -3.11497 2.33894 2.42080 2.83459 3.29367 3.39405 3.45435 3.47467 4.05727 4.13658 4.40559 4.51644 4.57272 4.80887 4.88440 5.06641 5.16249 5.27118 5.42339 5.49231 5.52607 5.61032 5.64849 5.67640 5.85695 5.94636 6.15444 6.19803 6.26071 6.41373 6.46589 6.72439 6.73196 6.78473 7.39936 7.64919 8.00038 8.10037 8.36473 9.47818 10.05057 10.39329 11.40486 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020481 B = 0.004075 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.763340 B = 6869.745681 C = 7957.541043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.089 0.911 4 C -0.135 4.135 5 C 0.155 3.845 6 N -0.734 5.734 7 C -0.240 4.240 8 H 0.070 0.930 9 C -0.013 4.013 10 N -0.933 5.933 11 Si 0.906 3.094 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.714 5.714 16 C 0.499 3.501 17 O -0.531 6.531 18 C 0.113 3.887 19 H 0.113 0.887 20 C -0.122 4.122 21 C -0.158 4.158 22 C 0.529 3.471 23 O -0.535 6.535 24 N -0.710 5.710 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.018 0.982 31 H 0.017 0.983 32 H 0.383 0.617 33 H 0.255 0.745 34 H 0.403 0.597 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.419 -0.042 -15.474 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.107 0.893 4 C -0.174 4.174 5 C 0.027 3.973 6 N -0.379 5.379 7 C -0.372 4.372 8 H 0.088 0.912 9 C -0.209 4.209 10 N -0.582 5.582 11 Si 0.737 3.263 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.366 5.366 16 C 0.282 3.718 17 O -0.406 6.406 18 C 0.003 3.997 19 H 0.131 0.869 20 C -0.160 4.160 21 C -0.198 4.198 22 C 0.316 3.684 23 O -0.411 6.411 24 N -0.364 5.364 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.217 0.783 33 H 0.065 0.935 34 H 0.238 0.762 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -7.322 1.240 -15.994 17.634 hybrid contribution 0.410 -0.726 0.568 1.008 sum -6.912 0.515 -15.426 16.912 Atomic orbital electron populations 1.22154 0.95387 1.02022 1.02337 1.21006 0.93588 0.97735 0.83663 0.89340 1.22073 0.98108 1.00814 0.96355 1.20628 0.90297 0.95619 0.90755 1.42376 1.05417 1.64969 1.25097 1.19262 0.83796 1.28521 1.05578 0.91169 1.24745 0.97727 1.00833 0.97629 1.69667 1.32749 1.40682 1.15095 0.86127 0.85025 0.77238 0.77863 1.20529 1.21814 1.21829 1.46127 1.66663 1.14301 1.09527 1.20928 0.78208 0.87782 0.84877 1.90734 1.49415 1.15673 1.84805 1.21589 0.98178 0.95696 0.84279 0.86910 1.22646 0.90935 0.99075 1.03322 1.22389 0.97957 0.99928 0.99515 1.20840 0.85778 0.77896 0.83885 1.90754 1.85133 1.37475 1.27725 1.45867 1.13412 1.49583 1.27587 0.91464 0.92521 0.92462 0.90206 0.91279 0.96404 0.96477 0.78313 0.93523 0.76229 0.88025 0.88419 0.87516 0.87305 0.74847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.48 37.16 0.35 -1.34 16 2 C 0.14 1.73 2.57 -67.93 -0.17 1.55 16 3 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 4 C -0.14 -1.88 4.87 -26.73 -0.13 -2.01 16 5 C 0.15 2.84 6.15 -4.04 -0.02 2.82 16 6 N -0.73 -17.73 5.60 -59.91 -0.34 -18.07 16 7 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 10 N -0.93 -27.53 13.06 55.49 0.72 -26.80 16 11 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 N -0.71 -7.19 4.53 -53.81 -0.24 -7.44 16 16 C 0.50 5.50 6.97 -10.98 -0.08 5.42 16 17 O -0.53 -8.14 16.23 5.56 0.09 -8.05 16 18 C 0.11 0.88 3.92 -68.16 -0.27 0.61 16 19 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 20 C -0.12 -0.85 6.70 -25.02 -0.17 -1.02 16 21 C -0.16 -1.44 6.86 -26.67 -0.18 -1.62 16 22 C 0.53 6.44 8.43 -10.86 -0.09 6.34 16 23 O -0.53 -8.69 18.03 5.55 0.10 -8.59 16 24 N -0.71 -6.83 5.46 -53.87 -0.29 -7.12 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.02 0.32 7.75 -51.93 -0.40 -0.08 16 31 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.38 9.72 7.67 -40.82 -0.31 9.41 16 33 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.40 3.23 8.60 -40.82 -0.35 2.88 16 35 H 0.10 0.76 7.88 -51.93 -0.41 0.35 16 36 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.41 3.51 8.96 -40.82 -0.37 3.15 16 LS Contribution 331.24 15.07 4.99 4.99 Total: -1.00 -35.26 331.24 -7.01 -42.27 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -6.01 Total: 8.37 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -1.01 Total: 3.61 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.15 Total: -59.43 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: 0.19 Total: -16.64 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.26 -7.01 -42.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715697112.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.345 kcal (2) G-P(sol) polarization free energy of solvation -35.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds