Wall clock time and date at job start Mon Mar 30 2020 01:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47430 * 2 1 4 4 C 1.53000 * 109.47394 * 120.00262 * 2 1 3 5 5 C 1.53004 * 109.47256 * 184.99820 * 4 2 1 6 6 N 1.46499 * 109.47482 * 179.97438 * 5 4 2 7 7 C 1.36929 * 120.00255 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99984 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00040 * 180.02562 * 7 6 5 10 10 N 1.31623 * 120.00065 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00059 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46994 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47324 * 119.99922 * 11 9 7 14 14 H 1.48499 * 109.47121 * 240.00064 * 11 9 7 15 15 N 1.46500 * 109.47107 * 240.00129 * 2 1 3 16 16 C 1.34782 * 119.99948 * 84.99727 * 15 2 1 17 17 O 1.21278 * 119.99918 * 0.02562 * 16 15 2 18 18 C 1.50701 * 119.99818 * 180.02562 * 16 15 2 19 19 H 1.09002 * 110.21677 * 40.70095 * 18 16 15 20 20 C 1.54480 * 110.24535 * 278.77063 * 18 16 15 21 21 C 1.54765 * 101.70376 * 266.27601 * 20 18 16 22 22 C 1.51285 * 104.23466 * 335.30457 * 21 20 18 23 23 O 1.21284 * 124.94280 * 196.17174 * 22 21 20 24 24 N 1.34423 * 110.11634 * 16.18786 * 22 21 20 25 25 H 1.08998 * 109.46744 * 299.99347 * 1 2 3 26 26 H 1.08992 * 109.47357 * 59.99669 * 1 2 3 27 27 H 1.09000 * 109.46988 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46752 * 304.99497 * 4 2 1 29 29 H 1.08999 * 109.47412 * 64.99882 * 4 2 1 30 30 H 1.08996 * 109.47289 * 299.99959 * 5 4 2 31 31 H 1.09009 * 109.46934 * 59.99740 * 5 4 2 32 32 H 0.97001 * 119.99737 * 0.02562 * 6 5 4 33 33 H 0.97000 * 119.99960 * 180.02562 * 10 9 7 34 34 H 0.96998 * 120.00349 * 265.00098 * 15 2 1 35 35 H 1.08994 * 110.97067 * 24.44862 * 20 18 16 36 36 H 1.08997 * 110.96887 * 148.21201 * 20 18 16 37 37 H 1.08999 * 110.51900 * 216.58825 * 21 20 18 38 38 H 1.08995 * 110.53135 * 94.02440 * 21 20 18 39 39 H 0.96996 * 124.35087 * 180.42562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6134 1.3136 6 7 4.0533 -1.3035 2.5100 7 6 5.3953 -1.3402 2.7794 8 1 6.0938 -0.8600 2.1100 9 6 5.8581 -1.9945 3.9127 10 7 5.0069 -2.5802 4.7282 11 14 7.6889 -2.0440 4.2806 12 1 8.4273 -1.3170 3.2170 13 1 7.9477 -1.3991 5.5929 14 1 8.1471 -3.4559 4.3240 15 7 2.0183 -0.6906 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8589 1.1586 -2.4115 18 6 2.6487 -0.7287 -3.5878 19 1 2.2112 -1.7250 -3.6523 20 6 4.1904 -0.8228 -3.5595 21 6 4.5965 0.4342 -4.3659 22 6 3.3981 0.7151 -5.2456 23 8 3.4055 1.4377 -6.2196 24 7 2.3239 0.0474 -4.7904 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.6055 -0.2617 2.1369 29 1 1.7517 -1.7716 1.2056 30 1 3.9995 -1.0728 0.4259 31 1 3.8533 0.4370 1.3572 32 1 3.4260 -1.7350 3.1110 33 1 5.3303 -3.0371 5.5204 34 1 2.2490 -1.6317 -1.1527 35 1 4.5657 -0.7703 -2.5376 36 1 4.5349 -1.7310 -4.0539 37 1 5.4771 0.2296 -4.9747 38 1 4.7834 1.2739 -3.6965 39 1 1.4468 0.0749 -5.2037 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715697112.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:20 Heat of formation + Delta-G solvation = -98.800385 kcal Electronic energy + Delta-G solvation = -20633.561380 eV Core-core repulsion = 17381.721573 eV Total energy + Delta-G solvation = -3251.839808 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.89670 -40.23260 -38.00397 -37.09709 -36.04970 -33.61871 -32.46452 -32.04322 -29.45908 -28.91016 -25.86326 -24.23396 -23.15711 -22.04609 -21.62018 -21.34532 -19.25146 -18.56441 -18.53297 -17.38470 -16.68101 -16.40359 -16.16803 -15.79705 -15.45464 -15.16775 -15.07213 -14.74273 -14.70115 -14.29945 -14.20342 -13.64373 -13.53742 -13.08468 -12.89227 -12.86673 -12.45664 -12.37264 -12.24910 -12.18452 -11.94869 -11.89454 -11.61151 -11.34374 -11.03575 -10.92298 -10.10798 -10.06351 -8.97218 -7.93609 -5.21928 1.42582 1.49926 1.51037 1.55890 1.60419 2.03886 2.50141 2.57866 3.32160 3.41070 3.48922 3.62439 3.77611 3.93447 4.09158 4.19806 4.22417 4.42437 4.45596 4.59424 4.69593 4.78629 4.81400 4.87789 4.96387 5.00478 5.05365 5.25547 5.30647 5.37298 5.52667 5.58262 5.69311 5.91018 6.29431 6.58148 7.13458 7.26588 7.36261 8.12390 8.34874 9.30012 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020481 B = 0.004075 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.763340 B = 6869.745681 C = 7957.541043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.153 3.847 3 H 0.064 0.936 4 C -0.119 4.119 5 C 0.153 3.847 6 N -0.747 5.747 7 C -0.243 4.243 8 H 0.074 0.926 9 C -0.073 4.073 10 N -0.968 5.968 11 Si 0.969 3.031 12 H -0.266 1.266 13 H -0.297 1.297 14 H -0.291 1.291 15 N -0.704 5.704 16 C 0.497 3.503 17 O -0.579 6.579 18 C 0.117 3.883 19 H 0.160 0.840 20 C -0.113 4.113 21 C -0.158 4.158 22 C 0.518 3.482 23 O -0.586 6.586 24 N -0.703 5.703 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.034 0.966 31 H 0.003 0.997 32 H 0.375 0.625 33 H 0.251 0.749 34 H 0.417 0.583 35 H 0.100 0.900 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.096 0.904 39 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.192 -1.564 -16.134 17.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.047 3.953 3 H 0.083 0.917 4 C -0.157 4.157 5 C 0.027 3.973 6 N -0.390 5.390 7 C -0.375 4.375 8 H 0.092 0.908 9 C -0.265 4.265 10 N -0.619 5.619 11 Si 0.799 3.201 12 H -0.191 1.191 13 H -0.224 1.224 14 H -0.218 1.218 15 N -0.357 5.357 16 C 0.283 3.717 17 O -0.458 6.458 18 C 0.008 3.992 19 H 0.177 0.823 20 C -0.150 4.150 21 C -0.198 4.198 22 C 0.306 3.694 23 O -0.467 6.467 24 N -0.356 5.356 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.052 0.948 31 H 0.021 0.979 32 H 0.207 0.793 33 H 0.060 0.940 34 H 0.254 0.746 35 H 0.119 0.881 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.114 0.886 39 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -7.108 -0.314 -16.665 18.120 hybrid contribution 0.290 -0.209 0.765 0.844 sum -6.818 -0.523 -15.900 17.308 Atomic orbital electron populations 1.22071 0.93856 1.03056 1.02136 1.20771 0.94635 0.96332 0.83537 0.91731 1.21897 0.94765 1.01879 0.97183 1.20792 0.93330 0.94087 0.89087 1.42593 1.04463 1.65277 1.26625 1.19643 0.85312 1.27288 1.05275 0.90766 1.25510 1.01705 1.01393 0.97922 1.69806 1.34466 1.42065 1.15595 0.85137 0.80491 0.77038 0.77484 1.19082 1.22399 1.21822 1.46017 1.66047 1.14856 1.08747 1.21528 0.77193 0.87225 0.85769 1.90727 1.51598 1.17929 1.85565 1.21846 0.99066 0.96670 0.81660 0.82315 1.22735 0.89902 0.99207 1.03205 1.22429 0.97421 1.00722 0.99260 1.21402 0.87253 0.77217 0.83492 1.90716 1.86139 1.39748 1.30095 1.45938 1.13176 1.48831 1.27643 0.91073 0.93369 0.90752 0.90712 0.89888 0.94808 0.97866 0.79324 0.94011 0.74568 0.88124 0.85060 0.85866 0.88575 0.74414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.48 71.98 0.68 -2.24 16 2 C 0.15 3.41 2.57 44.99 0.12 3.53 16 3 H 0.06 1.79 7.58 -2.39 -0.02 1.78 16 4 C -0.12 -3.10 4.87 30.60 0.15 -2.95 16 5 C 0.15 5.43 6.15 86.38 0.53 5.96 16 6 N -0.75 -35.49 5.60 -343.44 -1.92 -37.41 16 7 C -0.24 -13.00 9.99 84.03 0.84 -12.16 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 9 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 10 N -0.97 -57.21 13.06 21.65 0.28 -56.93 16 11 Si 0.97 44.51 29.55 68.60 2.03 46.54 16 12 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 13 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 14 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 15 N -0.70 -12.42 4.53 -442.53 -2.00 -14.42 16 16 C 0.50 10.02 6.97 87.66 0.61 10.63 16 17 O -0.58 -17.54 16.23 -3.02 -0.05 -17.59 16 18 C 0.12 1.45 3.92 44.70 0.18 1.63 16 19 H 0.16 0.63 8.14 -2.39 -0.02 0.61 16 20 C -0.11 -1.20 6.70 31.70 0.21 -0.99 16 21 C -0.16 -2.67 6.86 30.64 0.21 -2.46 16 22 C 0.52 12.35 8.43 87.90 0.74 13.09 16 23 O -0.59 -19.52 18.03 -3.04 -0.05 -19.58 16 24 N -0.70 -12.45 5.46 -442.95 -2.42 -14.86 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.03 1.11 7.75 -2.39 -0.02 1.09 16 31 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 32 H 0.37 18.89 7.67 -92.71 -0.71 18.18 16 33 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 34 H 0.42 5.14 8.60 -92.71 -0.80 4.34 16 35 H 0.10 1.17 7.88 -2.39 -0.02 1.15 16 36 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.42 6.60 8.96 -92.71 -0.83 5.77 16 Total: -1.00 -77.60 331.24 -0.67 -78.27 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: -1.26 Total: 25.52 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 4.73 Total: 10.47 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -6.06 Total: -123.63 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -0.10 Total: -37.17 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -77.60 -0.67 -78.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715697112.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.530 kcal (2) G-P(sol) polarization free energy of solvation -77.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds