Wall clock time and date at job start Mon Mar 30 2020 01:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47455 * 2 1 4 4 N 1.46504 * 109.47320 * 239.99845 * 2 1 3 5 5 C 1.34773 * 119.99894 * 84.99930 * 4 2 1 6 6 O 1.21344 * 120.00137 * 0.02562 * 5 4 2 7 7 C 1.49451 * 119.99860 * 179.72489 * 5 4 2 8 8 N 1.34776 * 119.99728 * 180.27759 * 7 5 4 9 9 O 1.21344 * 119.99944 * 0.27926 * 7 5 4 10 10 C 1.53001 * 109.46852 * 119.99640 * 2 1 3 11 11 H 1.09004 * 109.49734 * 60.07111 * 10 2 1 12 12 C 1.53032 * 109.50292 * 300.00176 * 10 2 1 13 13 C 1.53041 * 109.53944 * 178.68453 * 12 10 2 14 14 C 1.53184 * 109.31449 * 61.36589 * 13 12 10 15 15 N 1.46924 * 108.77411 * 305.36264 * 14 13 12 16 16 C 1.36940 * 120.63258 * 233.58717 * 15 14 13 17 17 H 1.08001 * 120.00242 * 151.83460 * 16 15 14 18 18 C 1.38815 * 119.99964 * 331.83637 * 16 15 14 19 19 N 1.31619 * 119.99731 * 343.07551 * 18 16 15 20 20 Si 1.86798 * 120.00145 * 163.07352 * 18 16 15 21 21 H 1.48502 * 109.47070 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46998 * 119.99592 * 20 18 16 23 23 H 1.48493 * 109.47049 * 240.00288 * 20 18 16 24 24 C 1.46928 * 118.74076 * 53.61059 * 15 14 13 25 25 H 1.09000 * 109.47455 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47412 * 300.00236 * 1 2 3 27 27 H 1.09000 * 109.47313 * 59.99952 * 1 2 3 28 28 H 0.96996 * 119.99620 * 265.00373 * 4 2 1 29 29 H 0.96998 * 120.00102 * 0.02562 * 8 7 5 30 30 H 0.97009 * 119.99373 * 180.02562 * 8 7 5 31 31 H 1.09006 * 109.45971 * 298.70167 * 12 10 2 32 32 H 1.09004 * 109.45756 * 58.67315 * 12 10 2 33 33 H 1.09002 * 109.49607 * 181.31730 * 13 12 10 34 34 H 1.09000 * 109.49846 * 301.37583 * 13 12 10 35 35 H 1.09001 * 109.59253 * 65.14998 * 14 13 12 36 36 H 1.09007 * 109.58724 * 185.57622 * 14 13 12 37 37 H 0.97004 * 119.99712 * 180.02562 * 19 18 16 38 38 H 1.08994 * 109.58753 * 186.60459 * 24 15 14 39 39 H 1.09004 * 109.58431 * 66.17954 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8589 1.1591 -2.4115 7 6 2.6511 -0.7214 -3.5758 8 7 2.7851 -0.0476 -4.7354 9 8 2.9397 -1.8987 -3.5213 10 6 2.0399 -0.7212 1.2493 11 1 1.6778 -1.7493 1.2492 12 6 1.5301 -0.0003 2.4992 13 6 2.0125 -0.7399 3.7492 14 6 3.5440 -0.7369 3.7803 15 7 4.0437 -1.2971 2.5173 16 6 4.9326 -2.3387 2.5193 17 1 4.9564 -3.0300 1.6898 18 6 5.8033 -2.5061 3.5874 19 7 6.0177 -1.5125 4.4235 20 14 6.6706 -4.1414 3.8381 21 1 6.2622 -5.0874 2.7686 22 1 8.1402 -3.9360 3.7817 23 1 6.2992 -4.7007 5.1626 24 6 3.5718 -0.7181 1.2520 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 2.2490 -1.6318 -1.1525 29 1 2.5548 0.8936 -4.7788 30 1 3.1120 -0.5041 -5.5265 31 1 1.9125 1.0204 2.5111 32 1 0.4403 0.0202 2.4875 33 1 1.6296 -0.2393 4.6386 34 1 1.6506 -1.7678 3.7262 35 1 3.9053 0.2851 3.8949 36 1 3.8938 -1.3460 4.6139 37 1 6.6264 -1.6293 5.1697 38 1 3.9399 -1.3148 0.4174 39 1 3.9354 0.3054 1.1605 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731558668.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:05 Heat of formation + Delta-G solvation = -63.791403 kcal Electronic energy + Delta-G solvation = -21329.475869 eV Core-core repulsion = 18079.154165 eV Total energy + Delta-G solvation = -3250.321704 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.63946 -38.81329 -37.78934 -35.49301 -33.86551 -32.97416 -31.07466 -30.45896 -28.55097 -25.65682 -25.01811 -23.10891 -21.94388 -20.66115 -20.38630 -19.27301 -18.47913 -17.28342 -16.66611 -16.19194 -15.80158 -15.38190 -14.83653 -14.36835 -14.15144 -13.86272 -13.58261 -13.39712 -13.21182 -12.68038 -12.47955 -12.29257 -11.84784 -11.79279 -11.53290 -11.12896 -10.97115 -10.67564 -10.42983 -10.19528 -10.16052 -10.06225 -9.91003 -9.77958 -9.55118 -9.43476 -9.07252 -8.45771 -6.65801 -5.77925 -3.20746 1.37846 2.48037 3.18736 3.38017 3.46089 3.48550 3.84034 4.48431 4.52567 4.90424 5.18831 5.33713 5.39079 5.52078 5.56075 5.72244 5.76680 5.93766 6.03330 6.06256 6.24660 6.29919 6.32518 6.36602 6.43990 6.61025 6.68616 6.75582 6.81288 6.85955 6.96340 7.32669 7.40477 7.68019 7.74835 7.81295 7.98296 8.45965 9.22438 9.85560 10.42210 11.30436 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019133 B = 0.005390 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.064952 B = 5193.614514 C = 6273.694437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.091 0.909 4 N -0.684 5.684 5 C 0.506 3.494 6 O -0.527 6.527 7 C 0.512 3.488 8 N -0.826 5.826 9 O -0.519 6.519 10 C -0.112 4.112 11 H 0.074 0.926 12 C -0.100 4.100 13 C -0.142 4.142 14 C 0.169 3.831 15 N -0.591 5.591 16 C -0.252 4.252 17 H 0.066 0.934 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.901 3.099 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.153 3.847 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.414 0.586 29 H 0.413 0.587 30 H 0.409 0.591 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.017 0.983 36 H 0.086 0.914 37 H 0.253 0.747 38 H 0.052 0.948 39 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.670 4.087 -11.959 16.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.109 0.891 4 N -0.336 5.336 5 C 0.285 3.715 6 O -0.404 6.404 7 C 0.291 3.709 8 N -0.392 5.392 9 O -0.394 6.394 10 C -0.133 4.133 11 H 0.093 0.907 12 C -0.138 4.138 13 C -0.181 4.181 14 C 0.043 3.957 15 N -0.313 5.313 16 C -0.382 4.382 17 H 0.084 0.916 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.731 3.269 21 H -0.202 1.202 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.027 3.973 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.250 0.750 29 H 0.243 0.757 30 H 0.241 0.759 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -10.604 4.154 -11.610 16.263 hybrid contribution 0.681 -0.951 -0.187 1.184 sum -9.924 3.203 -11.797 15.745 Atomic orbital electron populations 1.22209 0.95169 1.02240 1.02407 1.21242 0.93845 0.97657 0.83213 0.89125 1.45955 1.63757 1.15157 1.08739 1.19974 0.79658 0.87025 0.84799 1.90743 1.49614 1.15194 1.84891 1.20271 0.78546 0.86874 0.85216 1.43521 1.68173 1.15957 1.11542 1.90836 1.48181 1.15459 1.84884 1.22004 0.99737 0.99390 0.92191 0.90736 1.21443 0.98754 0.99042 0.94591 1.22177 1.00885 0.99386 0.95679 1.20797 0.87431 0.97240 0.90220 1.44042 1.49727 1.38094 0.99433 1.19229 1.10940 1.02050 1.05973 0.91648 1.25039 0.97215 0.97476 0.99855 1.70050 1.37848 1.29297 1.17473 0.86241 0.79086 0.83823 0.77762 1.20215 1.21749 1.21561 1.20886 0.89762 0.96428 0.90269 0.92380 0.90867 0.92579 0.74950 0.75662 0.75898 0.92518 0.93042 0.93186 0.92723 0.96484 0.89574 0.93718 0.92950 0.96518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.13 37.16 0.34 -1.58 16 2 C 0.14 2.01 2.16 -67.93 -0.15 1.86 16 3 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 4 N -0.68 -9.36 4.47 -54.24 -0.24 -9.61 16 5 C 0.51 6.92 7.85 -11.59 -0.09 6.83 16 6 O -0.53 -7.94 16.14 5.50 0.09 -7.85 16 7 C 0.51 6.38 8.16 -11.58 -0.09 6.29 16 8 N -0.83 -6.83 8.87 30.90 0.27 -6.56 16 9 O -0.52 -7.93 17.31 5.50 0.10 -7.83 16 10 C -0.11 -1.82 1.97 -90.50 -0.18 -2.00 16 11 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 12 C -0.10 -1.59 4.85 -26.69 -0.13 -1.72 16 13 C -0.14 -2.63 6.08 -26.61 -0.16 -2.79 16 14 C 0.17 3.99 5.30 -3.72 -0.02 3.97 16 15 N -0.59 -14.65 2.99 -172.32 -0.52 -15.17 16 16 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 17 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 18 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 19 N -0.90 -26.24 11.20 55.49 0.62 -25.62 16 20 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 C 0.15 3.16 5.56 -3.71 -0.02 3.13 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.80 6.40 -51.93 -0.33 0.47 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.41 5.63 7.90 -40.82 -0.32 5.30 16 29 H 0.41 2.81 8.30 -40.82 -0.34 2.47 16 30 H 0.41 2.50 8.93 -40.82 -0.36 2.14 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.69 6.36 -51.93 -0.33 0.36 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.09 2.29 6.06 -51.93 -0.31 1.97 16 37 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.05 1.08 7.45 -51.93 -0.39 0.69 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 317.77 15.07 4.79 4.79 Total: -1.00 -32.01 317.77 -6.37 -38.38 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.71 Total: 5.79 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -0.73 Total: 6.92 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.14 Total: -56.96 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.18 Total: -15.68 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.01 -6.37 -38.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731558668.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.416 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds