Wall clock time and date at job start Mon Mar 30 2020 01:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47455 * 2 1 4 4 N 1.46504 * 109.47320 * 239.99845 * 2 1 3 5 5 C 1.34773 * 119.99894 * 84.99930 * 4 2 1 6 6 O 1.21344 * 120.00137 * 0.02562 * 5 4 2 7 7 C 1.49451 * 119.99860 * 179.72489 * 5 4 2 8 8 N 1.34776 * 119.99728 * 180.27759 * 7 5 4 9 9 O 1.21344 * 119.99944 * 0.27926 * 7 5 4 10 10 C 1.53001 * 109.46852 * 119.99640 * 2 1 3 11 11 H 1.09004 * 109.49734 * 60.07111 * 10 2 1 12 12 C 1.53032 * 109.50292 * 300.00176 * 10 2 1 13 13 C 1.53041 * 109.53944 * 178.68453 * 12 10 2 14 14 C 1.53184 * 109.31449 * 61.36589 * 13 12 10 15 15 N 1.46924 * 108.77411 * 305.36264 * 14 13 12 16 16 C 1.36940 * 120.63258 * 233.58717 * 15 14 13 17 17 H 1.08001 * 120.00242 * 151.83460 * 16 15 14 18 18 C 1.38815 * 119.99964 * 331.83637 * 16 15 14 19 19 N 1.31619 * 119.99731 * 343.07551 * 18 16 15 20 20 Si 1.86798 * 120.00145 * 163.07352 * 18 16 15 21 21 H 1.48502 * 109.47070 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46998 * 119.99592 * 20 18 16 23 23 H 1.48493 * 109.47049 * 240.00288 * 20 18 16 24 24 C 1.46928 * 118.74076 * 53.61059 * 15 14 13 25 25 H 1.09000 * 109.47455 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47412 * 300.00236 * 1 2 3 27 27 H 1.09000 * 109.47313 * 59.99952 * 1 2 3 28 28 H 0.96996 * 119.99620 * 265.00373 * 4 2 1 29 29 H 0.96998 * 120.00102 * 0.02562 * 8 7 5 30 30 H 0.97009 * 119.99373 * 180.02562 * 8 7 5 31 31 H 1.09006 * 109.45971 * 298.70167 * 12 10 2 32 32 H 1.09004 * 109.45756 * 58.67315 * 12 10 2 33 33 H 1.09002 * 109.49607 * 181.31730 * 13 12 10 34 34 H 1.09000 * 109.49846 * 301.37583 * 13 12 10 35 35 H 1.09001 * 109.59253 * 65.14998 * 14 13 12 36 36 H 1.09007 * 109.58724 * 185.57622 * 14 13 12 37 37 H 0.97004 * 119.99712 * 180.02562 * 19 18 16 38 38 H 1.08994 * 109.58753 * 186.60459 * 24 15 14 39 39 H 1.09004 * 109.58431 * 66.17954 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8589 1.1591 -2.4115 7 6 2.6511 -0.7214 -3.5758 8 7 2.7851 -0.0476 -4.7354 9 8 2.9397 -1.8987 -3.5213 10 6 2.0399 -0.7212 1.2493 11 1 1.6778 -1.7493 1.2492 12 6 1.5301 -0.0003 2.4992 13 6 2.0125 -0.7399 3.7492 14 6 3.5440 -0.7369 3.7803 15 7 4.0437 -1.2971 2.5173 16 6 4.9326 -2.3387 2.5193 17 1 4.9564 -3.0300 1.6898 18 6 5.8033 -2.5061 3.5874 19 7 6.0177 -1.5125 4.4235 20 14 6.6706 -4.1414 3.8381 21 1 6.2622 -5.0874 2.7686 22 1 8.1402 -3.9360 3.7817 23 1 6.2992 -4.7007 5.1626 24 6 3.5718 -0.7181 1.2520 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 2.2490 -1.6318 -1.1525 29 1 2.5548 0.8936 -4.7788 30 1 3.1120 -0.5041 -5.5265 31 1 1.9125 1.0204 2.5111 32 1 0.4403 0.0202 2.4875 33 1 1.6296 -0.2393 4.6386 34 1 1.6506 -1.7678 3.7262 35 1 3.9053 0.2851 3.8949 36 1 3.8938 -1.3460 4.6139 37 1 6.6264 -1.6293 5.1697 38 1 3.9399 -1.3148 0.4174 39 1 3.9354 0.3054 1.1605 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731558668.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:05 Heat of formation + Delta-G solvation = -88.803886 kcal Electronic energy + Delta-G solvation = -21330.560492 eV Core-core repulsion = 18079.154165 eV Total energy + Delta-G solvation = -3251.406327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.70900 -40.02417 -39.11981 -36.89616 -34.99232 -34.43521 -32.62443 -32.11987 -29.94704 -27.22791 -26.43148 -24.48992 -23.60964 -22.03185 -21.49262 -20.69191 -19.55060 -18.68830 -18.18014 -17.20638 -16.98783 -16.73857 -16.43404 -15.88624 -15.52198 -15.08777 -15.00667 -14.84982 -14.68230 -14.11211 -14.01543 -13.73161 -13.26207 -13.01923 -12.90283 -12.78902 -12.57513 -12.26722 -12.22179 -11.95262 -11.76287 -11.49588 -11.26936 -11.09263 -10.90796 -10.73661 -10.54683 -10.22795 -8.67392 -7.87779 -5.33715 0.34633 1.44979 1.46957 1.49089 1.57547 2.15279 2.50226 2.88879 3.26634 3.52418 3.61474 3.92206 3.98855 4.05487 4.35859 4.42559 4.49404 4.64266 4.76582 4.83795 4.88196 4.93402 5.04500 5.11237 5.20389 5.28191 5.32796 5.39705 5.48022 5.55762 5.58461 5.67578 5.79859 5.93253 6.30920 6.39161 6.79860 7.02796 7.15017 7.86178 8.37410 9.18186 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019133 B = 0.005390 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.064952 B = 5193.614514 C = 6273.694437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.151 3.849 3 H 0.080 0.920 4 N -0.686 5.686 5 C 0.505 3.495 6 O -0.542 6.542 7 C 0.514 3.486 8 N -0.800 5.800 9 O -0.552 6.552 10 C -0.097 4.097 11 H 0.077 0.923 12 C -0.096 4.096 13 C -0.131 4.131 14 C 0.172 3.828 15 N -0.609 5.609 16 C -0.262 4.262 17 H 0.065 0.935 18 C -0.050 4.050 19 N -0.935 5.935 20 Si 0.965 3.035 21 H -0.267 1.267 22 H -0.293 1.293 23 H -0.288 1.288 24 C 0.153 3.847 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.056 0.944 28 H 0.414 0.586 29 H 0.423 0.577 30 H 0.422 0.578 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.053 0.947 35 H -0.008 1.008 36 H 0.050 0.950 37 H 0.249 0.751 38 H 0.046 0.954 39 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.460 3.959 -13.096 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.047 3.953 3 H 0.098 0.902 4 N -0.337 5.337 5 C 0.285 3.715 6 O -0.420 6.420 7 C 0.292 3.708 8 N -0.367 5.367 9 O -0.430 6.430 10 C -0.118 4.118 11 H 0.095 0.905 12 C -0.134 4.134 13 C -0.170 4.170 14 C 0.047 3.953 15 N -0.332 5.332 16 C -0.392 4.392 17 H 0.082 0.918 18 C -0.245 4.245 19 N -0.581 5.581 20 Si 0.793 3.207 21 H -0.192 1.192 22 H -0.220 1.220 23 H -0.214 1.214 24 C 0.027 3.973 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.075 0.925 28 H 0.251 0.749 29 H 0.255 0.745 30 H 0.257 0.743 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.010 0.990 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -12.420 4.055 -12.801 18.291 hybrid contribution 1.274 -0.832 0.101 1.525 sum -11.146 3.223 -12.700 17.202 Atomic orbital electron populations 1.22152 0.92779 1.03118 1.03171 1.21127 0.95509 0.96484 0.82150 0.90231 1.45986 1.63711 1.15187 1.08848 1.20192 0.79270 0.86834 0.85164 1.90735 1.50343 1.15730 1.85201 1.20087 0.78570 0.86450 0.85703 1.43381 1.66216 1.16317 1.10739 1.90830 1.50130 1.16670 1.85350 1.21781 0.95976 1.00089 0.93908 0.90510 1.21443 1.01066 0.98234 0.92625 1.22009 0.96516 1.00198 0.98260 1.20651 0.91071 0.94782 0.88812 1.44307 1.49794 1.38010 1.01098 1.19535 1.11093 1.02751 1.05851 0.91772 1.25776 0.98353 1.00461 0.99902 1.70200 1.38798 1.31102 1.18004 0.85245 0.77559 0.80192 0.77700 1.19165 1.22050 1.21440 1.20987 0.92985 0.94997 0.88343 0.91425 0.89380 0.92537 0.74886 0.74475 0.74299 0.92665 0.89067 0.91016 0.92788 0.98975 0.93107 0.94143 0.93502 0.97968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.13 71.98 0.66 -2.47 16 2 C 0.15 3.92 2.16 44.99 0.10 4.02 16 3 H 0.08 2.28 7.58 -2.39 -0.02 2.26 16 4 N -0.69 -17.93 4.47 -443.87 -1.98 -19.91 16 5 C 0.50 13.18 7.85 87.27 0.69 13.87 16 6 O -0.54 -15.50 16.14 -3.23 -0.05 -15.55 16 7 C 0.51 12.13 8.16 87.27 0.71 12.84 16 8 N -0.80 -11.66 8.87 -174.50 -1.55 -13.20 16 9 O -0.55 -16.41 17.31 -3.23 -0.06 -16.47 16 10 C -0.10 -2.98 1.97 -10.72 -0.02 -3.00 16 11 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 12 C -0.10 -2.79 4.85 30.62 0.15 -2.64 16 13 C -0.13 -4.65 6.08 30.67 0.19 -4.46 16 14 C 0.17 8.31 5.30 86.36 0.46 8.77 16 15 N -0.61 -30.73 2.99 -699.09 -2.09 -32.82 16 16 C -0.26 -14.61 9.58 84.03 0.81 -13.81 16 17 H 0.06 3.52 7.89 -2.91 -0.02 3.49 16 18 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 19 N -0.93 -56.05 11.20 21.65 0.24 -55.81 16 20 Si 0.96 45.49 29.59 68.60 2.03 47.52 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 24 C 0.15 6.31 5.56 86.36 0.48 6.79 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.09 1.54 6.40 -2.39 -0.02 1.52 16 27 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.41 10.90 7.90 -92.71 -0.73 10.16 16 29 H 0.42 4.82 8.30 -92.71 -0.77 4.05 16 30 H 0.42 4.25 8.93 -92.70 -0.83 3.42 16 31 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.09 2.02 6.36 -2.39 -0.02 2.00 16 33 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 35 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H 0.05 2.79 6.06 -2.38 -0.01 2.78 16 37 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 38 H 0.05 1.95 7.45 -2.39 -0.02 1.93 16 39 H 0.00 0.10 8.14 -2.39 -0.02 0.09 16 Total: -1.00 -70.38 317.77 -0.07 -70.46 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -1.24 Total: 18.28 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: 4.63 Total: 17.51 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -5.38 Total: -121.74 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.11 Total: -32.02 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -70.38 -0.07 -70.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731558668.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.349 kcal (2) G-P(sol) polarization free energy of solvation -70.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds