Wall clock time and date at job start Mon Mar 30 2020 01:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 C 1.53001 * 109.47049 * 185.00237 * 4 2 1 6 6 N 1.46496 * 109.46907 * 180.02562 * 5 4 2 7 7 C 1.36940 * 119.99895 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99861 * 0.02562 * 7 6 5 9 9 C 1.38814 * 120.00211 * 179.97438 * 7 6 5 10 10 N 1.31621 * 119.99686 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00151 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.46845 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.47013 * 120.00112 * 11 9 7 14 14 H 1.48508 * 109.47013 * 240.00312 * 11 9 7 15 15 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 16 16 C 1.34770 * 120.00256 * 84.99846 * 15 2 1 17 17 O 1.21283 * 120.00026 * 359.97438 * 16 15 2 18 18 C 1.50701 * 119.99922 * 180.02562 * 16 15 2 19 19 H 1.09002 * 110.21758 * 319.29687 * 18 16 15 20 20 C 1.54483 * 110.24639 * 81.22905 * 18 16 15 21 21 C 1.54766 * 101.70373 * 144.36109 * 20 18 16 22 22 C 1.51280 * 104.23306 * 335.30288 * 21 20 18 23 23 O 1.21282 * 124.93965 * 196.16806 * 22 21 20 24 24 N 1.34415 * 110.11940 * 16.19208 * 22 21 20 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 29 29 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 30 30 H 1.08998 * 109.47250 * 300.00119 * 5 4 2 31 31 H 1.08998 * 109.47252 * 60.00195 * 5 4 2 32 32 H 0.96998 * 120.00501 * 359.97438 * 6 5 4 33 33 H 0.97001 * 119.99967 * 180.02562 * 10 9 7 34 34 H 0.97005 * 119.99374 * 264.99912 * 15 2 1 35 35 H 1.09003 * 110.96544 * 262.53251 * 20 18 16 36 36 H 1.08998 * 110.96842 * 26.29882 * 20 18 16 37 37 H 1.09001 * 110.51695 * 216.58390 * 21 20 18 38 38 H 1.08992 * 110.52625 * 94.02292 * 21 20 18 39 39 H 0.97001 * 124.35179 * 180.38913 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 7 4.0532 -1.3044 2.5095 7 6 5.3954 -1.3413 2.7788 8 1 6.0938 -0.8604 2.1099 9 6 5.8581 -1.9957 3.9122 10 7 5.0069 -2.5812 4.7277 11 14 7.6889 -2.0454 4.2800 12 1 8.4272 -1.3173 3.2171 13 1 7.9477 -1.4005 5.5923 14 1 8.1469 -3.4574 4.3233 15 7 2.0184 -0.6905 -1.1962 16 6 2.1471 -0.0181 -2.3571 17 8 1.8582 1.1586 -2.4116 18 6 2.6490 -0.7286 -3.5877 19 1 3.4646 -1.4031 -3.3270 20 6 1.4995 -1.5135 -4.2579 21 6 1.8431 -1.3533 -5.7585 22 6 2.6629 -0.0833 -5.8188 23 8 2.8954 0.5460 -6.8291 24 7 3.0965 0.2460 -4.5898 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6054 -0.2618 2.1369 29 1 1.7517 -1.7715 1.2055 30 1 3.9995 -1.0727 0.4259 31 1 3.8532 0.4370 1.3574 32 1 3.4260 -1.7359 3.1105 33 1 5.3302 -3.0382 5.5198 34 1 2.2491 -1.6317 -1.1527 35 1 1.5189 -2.5623 -3.9618 36 1 0.5339 -1.0627 -4.0289 37 1 0.9333 -1.2486 -6.3496 38 1 2.4292 -2.2026 -6.1092 39 1 3.6361 1.0271 -4.3908 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753953035.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:23 Heat of formation + Delta-G solvation = -71.800585 kcal Electronic energy + Delta-G solvation = -20397.069891 eV Core-core repulsion = 17146.400883 eV Total energy + Delta-G solvation = -3250.669009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.03181 -39.40006 -36.92611 -36.14149 -34.44787 -32.19730 -31.58995 -30.84570 -28.32412 -27.94116 -24.14987 -23.23737 -21.80070 -21.05958 -20.73372 -20.55660 -18.06789 -17.56407 -17.11231 -16.17029 -16.08441 -15.20987 -14.99166 -14.68035 -14.07822 -13.97871 -13.88615 -13.52075 -13.46278 -13.40356 -13.09077 -12.91703 -12.64125 -12.17539 -11.95206 -11.56077 -11.29056 -11.09862 -10.86958 -10.72443 -10.63428 -10.26285 -10.12102 -10.06735 -9.76705 -9.35215 -9.15861 -8.92853 -6.98881 -5.82689 -3.11774 2.29339 2.34129 2.78719 3.25122 3.39296 3.45448 3.47391 3.95203 4.00614 4.32832 4.51724 4.56171 4.66943 4.87858 4.99348 5.14899 5.23877 5.25839 5.35028 5.48598 5.48991 5.63637 5.66248 5.84325 5.92950 6.14313 6.18784 6.25371 6.38857 6.43602 6.72199 6.73172 6.77692 7.35438 7.64987 7.94293 8.04842 8.36297 9.47609 10.04679 10.39060 11.40184 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022478 B = 0.003602 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.361812 B = 7770.653560 C = 8546.414079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.089 0.911 4 C -0.135 4.135 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.241 4.241 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.712 5.712 16 C 0.506 3.494 17 O -0.532 6.532 18 C 0.111 3.889 19 H 0.109 0.891 20 C -0.121 4.121 21 C -0.155 4.155 22 C 0.522 3.478 23 O -0.534 6.534 24 N -0.708 5.708 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.018 0.982 31 H 0.017 0.983 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.404 0.596 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.260 -0.725 -16.067 19.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.107 0.893 4 C -0.173 4.173 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.372 4.372 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.364 5.364 16 C 0.290 3.710 17 O -0.408 6.408 18 C 0.001 3.999 19 H 0.127 0.873 20 C -0.159 4.159 21 C -0.195 4.195 22 C 0.309 3.691 23 O -0.410 6.410 24 N -0.364 5.364 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.217 0.783 33 H 0.065 0.935 34 H 0.239 0.761 35 H 0.121 0.879 36 H 0.107 0.893 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -10.231 0.401 -16.674 19.567 hybrid contribution 1.199 -0.359 0.841 1.508 sum -9.032 0.042 -15.833 18.228 Atomic orbital electron populations 1.22159 0.95283 1.02085 1.02389 1.21026 0.93660 0.97728 0.83586 0.89307 1.22071 0.98077 1.00840 0.96335 1.20629 0.90322 0.95625 0.90777 1.42371 1.05410 1.64922 1.25142 1.19268 0.83807 1.28528 1.05592 0.91194 1.24748 0.97763 1.00831 0.97615 1.69666 1.32746 1.40678 1.15091 0.86119 0.84995 0.77249 0.77850 1.20548 1.21800 1.21802 1.46097 1.66554 1.14338 1.09368 1.20585 0.78354 0.87561 0.84530 1.90740 1.49617 1.15710 1.84774 1.21645 0.98880 0.91084 0.88291 0.87345 1.22635 0.97759 1.01575 0.93906 1.22391 1.02026 0.97491 0.97595 1.20822 0.79212 0.86397 0.82698 1.90770 1.59527 1.57527 1.33222 1.45948 1.54588 1.28343 1.07473 0.92390 0.91427 0.92470 0.90146 0.91236 0.96444 0.96477 0.78300 0.93517 0.76145 0.87902 0.89335 0.87604 0.87247 0.74347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.48 37.16 0.35 -1.28 16 2 C 0.14 1.71 2.57 -67.93 -0.17 1.53 16 3 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 4 C -0.13 -1.87 4.87 -26.73 -0.13 -2.00 16 5 C 0.15 2.88 6.15 -4.04 -0.02 2.85 16 6 N -0.73 -17.90 5.60 -59.91 -0.34 -18.24 16 7 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 10 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16 11 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 N -0.71 -7.12 4.53 -53.80 -0.24 -7.36 16 16 C 0.51 5.52 6.99 -10.99 -0.08 5.44 16 17 O -0.53 -7.97 16.23 5.55 0.09 -7.88 16 18 C 0.11 0.87 3.92 -68.16 -0.27 0.61 16 19 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 20 C -0.12 -0.66 6.69 -25.02 -0.17 -0.82 16 21 C -0.15 -1.00 6.86 -26.67 -0.18 -1.18 16 22 C 0.52 5.78 8.43 -10.86 -0.09 5.69 16 23 O -0.53 -8.21 18.03 5.56 0.10 -8.11 16 24 N -0.71 -7.15 5.46 -53.88 -0.29 -7.45 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.02 0.32 7.75 -51.93 -0.40 -0.08 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.38 9.77 7.67 -40.82 -0.31 9.46 16 33 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.40 3.22 8.60 -40.82 -0.35 2.87 16 35 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.09 0.54 7.90 -51.93 -0.41 0.13 16 37 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.42 4.43 8.95 -40.82 -0.37 4.06 16 LS Contribution 331.25 15.07 4.99 4.99 Total: -1.00 -35.25 331.25 -7.01 -42.26 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -6.01 Total: 8.12 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.01 Total: 3.58 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.15 Total: -59.98 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.19 Total: -15.99 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.25 -7.01 -42.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753953035.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.538 kcal (2) G-P(sol) polarization free energy of solvation -35.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds