Wall clock time and date at job start Mon Mar 30 2020 01:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 C 1.53001 * 109.47049 * 185.00237 * 4 2 1 6 6 N 1.46496 * 109.46907 * 180.02562 * 5 4 2 7 7 C 1.36940 * 119.99895 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99861 * 0.02562 * 7 6 5 9 9 C 1.38814 * 120.00211 * 179.97438 * 7 6 5 10 10 N 1.31621 * 119.99686 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00151 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.46845 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.47013 * 120.00112 * 11 9 7 14 14 H 1.48508 * 109.47013 * 240.00312 * 11 9 7 15 15 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 16 16 C 1.34770 * 120.00256 * 84.99846 * 15 2 1 17 17 O 1.21283 * 120.00026 * 359.97438 * 16 15 2 18 18 C 1.50701 * 119.99922 * 180.02562 * 16 15 2 19 19 H 1.09002 * 110.21758 * 319.29687 * 18 16 15 20 20 C 1.54483 * 110.24639 * 81.22905 * 18 16 15 21 21 C 1.54766 * 101.70373 * 144.36109 * 20 18 16 22 22 C 1.51280 * 104.23306 * 335.30288 * 21 20 18 23 23 O 1.21282 * 124.93965 * 196.16806 * 22 21 20 24 24 N 1.34415 * 110.11940 * 16.19208 * 22 21 20 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 29 29 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 30 30 H 1.08998 * 109.47250 * 300.00119 * 5 4 2 31 31 H 1.08998 * 109.47252 * 60.00195 * 5 4 2 32 32 H 0.96998 * 120.00501 * 359.97438 * 6 5 4 33 33 H 0.97001 * 119.99967 * 180.02562 * 10 9 7 34 34 H 0.97005 * 119.99374 * 264.99912 * 15 2 1 35 35 H 1.09003 * 110.96544 * 262.53251 * 20 18 16 36 36 H 1.08998 * 110.96842 * 26.29882 * 20 18 16 37 37 H 1.09001 * 110.51695 * 216.58390 * 21 20 18 38 38 H 1.08992 * 110.52625 * 94.02292 * 21 20 18 39 39 H 0.97001 * 124.35179 * 180.38913 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 7 4.0532 -1.3044 2.5095 7 6 5.3954 -1.3413 2.7788 8 1 6.0938 -0.8604 2.1099 9 6 5.8581 -1.9957 3.9122 10 7 5.0069 -2.5812 4.7277 11 14 7.6889 -2.0454 4.2800 12 1 8.4272 -1.3173 3.2171 13 1 7.9477 -1.4005 5.5923 14 1 8.1469 -3.4574 4.3233 15 7 2.0184 -0.6905 -1.1962 16 6 2.1471 -0.0181 -2.3571 17 8 1.8582 1.1586 -2.4116 18 6 2.6490 -0.7286 -3.5877 19 1 3.4646 -1.4031 -3.3270 20 6 1.4995 -1.5135 -4.2579 21 6 1.8431 -1.3533 -5.7585 22 6 2.6629 -0.0833 -5.8188 23 8 2.8954 0.5460 -6.8291 24 7 3.0965 0.2460 -4.5898 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6054 -0.2618 2.1369 29 1 1.7517 -1.7715 1.2055 30 1 3.9995 -1.0727 0.4259 31 1 3.8532 0.4370 1.3574 32 1 3.4260 -1.7359 3.1105 33 1 5.3302 -3.0382 5.5198 34 1 2.2491 -1.6317 -1.1527 35 1 1.5189 -2.5623 -3.9618 36 1 0.5339 -1.0627 -4.0289 37 1 0.9333 -1.2486 -6.3496 38 1 2.4292 -2.2026 -6.1092 39 1 3.6361 1.0271 -4.3908 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753953035.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:23 Heat of formation + Delta-G solvation = -100.081228 kcal Electronic energy + Delta-G solvation = -20398.296232 eV Core-core repulsion = 17146.400883 eV Total energy + Delta-G solvation = -3251.895349 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.82344 -40.31793 -38.01947 -37.13431 -36.08322 -33.64832 -32.42690 -32.06949 -29.48424 -28.97510 -25.87252 -24.03629 -23.15911 -22.11430 -21.53574 -21.41938 -19.29686 -18.73647 -18.31367 -17.14518 -16.90240 -16.68556 -16.00992 -15.87112 -15.47323 -15.23229 -15.07541 -14.71199 -14.64070 -14.28944 -14.06866 -13.73967 -13.48844 -13.09791 -12.91278 -12.87651 -12.86454 -12.37205 -12.21971 -12.06061 -11.97872 -11.90139 -11.62675 -11.15534 -10.99817 -10.94687 -10.19497 -10.07064 -8.99857 -7.96199 -5.24677 1.46429 1.47805 1.48837 1.50811 1.58341 1.99787 2.48101 2.55499 3.32471 3.38056 3.42815 3.63435 3.77637 4.04588 4.07999 4.13390 4.19501 4.41010 4.51767 4.59218 4.68545 4.80075 4.82858 4.88378 4.99049 5.02123 5.07392 5.23904 5.30397 5.36540 5.49577 5.56344 5.66374 5.93205 6.27043 6.54317 7.11284 7.22375 7.33750 8.09620 8.32635 9.27244 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022478 B = 0.003602 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.361812 B = 7770.653560 C = 8546.414079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.152 3.848 3 H 0.064 0.936 4 C -0.118 4.118 5 C 0.153 3.847 6 N -0.746 5.746 7 C -0.246 4.246 8 H 0.072 0.928 9 C -0.072 4.072 10 N -0.967 5.967 11 Si 0.970 3.030 12 H -0.269 1.269 13 H -0.295 1.295 14 H -0.290 1.290 15 N -0.702 5.702 16 C 0.505 3.495 17 O -0.579 6.579 18 C 0.111 3.889 19 H 0.138 0.862 20 C -0.110 4.110 21 C -0.144 4.144 22 C 0.510 3.490 23 O -0.589 6.589 24 N -0.713 5.713 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.029 0.971 31 H 0.003 0.997 32 H 0.376 0.624 33 H 0.252 0.748 34 H 0.417 0.583 35 H 0.143 0.857 36 H 0.082 0.918 37 H 0.115 0.885 38 H 0.136 0.864 39 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.594 -2.449 -16.653 19.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.047 3.953 3 H 0.082 0.918 4 C -0.156 4.156 5 C 0.026 3.974 6 N -0.389 5.389 7 C -0.378 4.378 8 H 0.090 0.910 9 C -0.265 4.265 10 N -0.617 5.617 11 Si 0.799 3.201 12 H -0.193 1.193 13 H -0.222 1.222 14 H -0.217 1.217 15 N -0.355 5.355 16 C 0.291 3.709 17 O -0.458 6.458 18 C 0.003 3.997 19 H 0.156 0.844 20 C -0.148 4.148 21 C -0.184 4.184 22 C 0.298 3.702 23 O -0.470 6.470 24 N -0.366 5.366 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.047 0.953 31 H 0.021 0.979 32 H 0.208 0.792 33 H 0.061 0.939 34 H 0.255 0.745 35 H 0.161 0.839 36 H 0.101 0.899 37 H 0.133 0.867 38 H 0.154 0.846 39 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -10.572 -1.351 -17.263 20.288 hybrid contribution 1.297 0.241 1.025 1.670 sum -9.276 -1.110 -16.238 18.733 Atomic orbital electron populations 1.22073 0.93521 1.03242 1.02237 1.20801 0.94881 0.96262 0.83367 0.91754 1.21895 0.94453 1.02017 0.97284 1.20789 0.93595 0.94011 0.88975 1.42575 1.04425 1.65245 1.26653 1.19627 0.85348 1.27492 1.05358 0.91038 1.25518 1.01795 1.01300 0.97854 1.69801 1.34451 1.41922 1.15557 0.85126 0.80378 0.77093 0.77477 1.19334 1.22195 1.21682 1.45987 1.66006 1.14881 1.08594 1.21118 0.77379 0.87031 0.85357 1.90729 1.51673 1.17879 1.85523 1.21912 1.00780 0.90573 0.86453 0.84438 1.22749 0.96196 1.03316 0.92499 1.22445 1.01818 0.95497 0.98634 1.21705 0.78982 0.87482 0.82006 1.90731 1.61655 1.59598 1.35019 1.46170 1.53948 1.28435 1.08074 0.90521 0.91043 0.93208 0.90519 0.89733 0.95278 0.97936 0.79216 0.93919 0.74527 0.83885 0.89891 0.86697 0.84624 0.75326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.48 71.98 0.68 -2.11 16 2 C 0.15 3.37 2.57 44.99 0.12 3.49 16 3 H 0.06 1.78 7.58 -2.39 -0.02 1.76 16 4 C -0.12 -3.09 4.87 30.59 0.15 -2.94 16 5 C 0.15 5.54 6.15 86.38 0.53 6.07 16 6 N -0.75 -35.96 5.60 -343.46 -1.92 -37.89 16 7 C -0.25 -13.39 9.99 84.03 0.84 -12.55 16 8 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 9 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 10 N -0.97 -57.35 13.06 21.65 0.28 -57.07 16 11 Si 0.97 45.02 29.55 68.60 2.03 47.05 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 14 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 15 N -0.70 -12.45 4.53 -442.53 -2.00 -14.45 16 16 C 0.51 10.25 6.99 87.66 0.61 10.87 16 17 O -0.58 -17.30 16.23 -3.04 -0.05 -17.35 16 18 C 0.11 1.48 3.92 44.70 0.18 1.65 16 19 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 20 C -0.11 -0.79 6.69 31.70 0.21 -0.57 16 21 C -0.14 -1.45 6.86 30.63 0.21 -1.24 16 22 C 0.51 10.97 8.43 87.90 0.74 11.71 16 23 O -0.59 -18.61 18.03 -3.04 -0.05 -18.67 16 24 N -0.71 -13.96 5.46 -442.96 -2.42 -16.38 16 25 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.03 1.00 7.75 -2.39 -0.02 0.99 16 31 H 0.00 0.10 8.14 -2.39 -0.02 0.09 16 32 H 0.38 19.06 7.67 -92.71 -0.71 18.35 16 33 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 34 H 0.42 5.20 8.60 -92.70 -0.80 4.40 16 35 H 0.14 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.08 0.75 7.90 -2.39 -0.02 0.73 16 37 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.41 8.92 8.95 -92.71 -0.83 8.09 16 Total: -1.00 -78.11 331.25 -0.67 -78.77 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: -1.26 Total: 25.17 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 4.74 Total: 10.81 kcal Atomic # 7 Polarization: -119.72 SS G_CDS: -6.07 Total: -125.78 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.10 Total: -36.01 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -78.11 -0.67 -78.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753953035.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.308 kcal (2) G-P(sol) polarization free energy of solvation -78.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds