Wall clock time and date at job start Mon Mar 30 2020 01:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50703 * 109.46626 * 2 1 4 4 O 1.21273 * 120.00391 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99712 * 179.97438 * 3 2 1 6 6 C 1.46499 * 119.99992 * 180.02562 * 5 3 2 7 7 C 1.50697 * 109.47053 * 180.02562 * 6 5 3 8 8 O 1.21290 * 120.00131 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99991 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00068 * 0.02562 * 9 7 6 11 11 C 1.46498 * 120.00146 * 180.02562 * 9 7 6 12 12 C 1.53496 * 114.21138 * 119.99825 * 11 9 7 13 13 N 1.47070 * 87.98076 * 87.71671 * 12 11 9 14 14 C 1.36941 * 136.05440 * 207.08124 * 13 12 11 15 15 H 1.07997 * 120.00412 * 7.86028 * 14 13 12 16 16 C 1.38814 * 119.99634 * 187.85423 * 14 13 12 17 17 N 1.31616 * 119.99939 * 173.06607 * 16 14 13 18 18 Si 1.86796 * 120.00336 * 353.06587 * 16 14 13 19 19 H 1.48499 * 109.47209 * 175.20930 * 18 16 14 20 20 H 1.48510 * 109.47106 * 295.21158 * 18 16 14 21 21 H 1.48503 * 109.47106 * 55.20691 * 18 16 14 22 22 C 1.47063 * 87.88519 * 27.34830 * 13 12 11 23 23 H 1.09001 * 109.46962 * 299.99750 * 1 2 3 24 24 H 1.08990 * 109.47104 * 59.99927 * 1 2 3 25 25 H 1.08995 * 109.46723 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47095 * 240.00085 * 2 1 3 27 27 H 1.08997 * 109.46942 * 119.99695 * 2 1 3 28 28 H 0.97000 * 119.99932 * 0.02562 * 5 3 2 29 29 H 1.09003 * 109.46833 * 60.00242 * 6 5 3 30 30 H 1.09000 * 109.46779 * 300.00401 * 6 5 3 31 31 H 1.08993 * 109.47136 * 270.00131 * 10 9 7 32 32 H 1.08998 * 109.46845 * 29.99973 * 10 9 7 33 33 H 1.09001 * 109.46872 * 149.99989 * 10 9 7 34 34 H 1.09007 * 113.27923 * 346.93027 * 11 9 7 35 35 H 1.09000 * 113.46265 * 332.94223 * 12 11 9 36 36 H 1.08991 * 113.52116 * 202.50467 * 12 11 9 37 37 H 0.97007 * 119.99810 * 1.51422 * 17 16 14 38 38 H 1.08997 * 113.47359 * 87.43609 * 22 13 12 39 39 H 1.09003 * 113.46485 * 217.88067 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8457 3.0484 0.0011 7 6 5.3527 3.0485 0.0010 8 8 5.9592 1.9981 0.0000 9 7 6.0265 4.2157 0.0009 10 6 5.2940 5.4844 0.0015 11 6 7.4915 4.2158 0.0002 12 6 8.1204 4.9160 -1.2123 13 7 8.0460 6.1761 -0.4576 14 6 7.9472 7.5064 -0.7671 15 1 7.7788 7.8120 -1.7892 16 6 8.0633 8.4621 0.2329 17 7 8.1054 9.7399 -0.0797 18 14 8.1600 7.9347 2.0223 19 1 8.3952 9.1258 2.8774 20 1 6.8835 7.2863 2.4169 21 1 9.2779 6.9726 2.1951 22 6 8.1313 5.3792 0.7755 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.9878 0.9300 0.0005 29 1 3.4820 3.5620 0.8912 30 1 3.4825 3.5625 -0.8889 31 1 5.1118 5.7993 -1.0259 32 1 4.3418 5.3539 0.5158 33 1 5.8833 6.2439 0.5153 34 1 7.9225 3.2403 0.2262 35 1 7.4858 4.9027 -2.0985 36 1 9.1407 4.5939 -1.4198 37 1 8.0331 10.0150 -1.0071 38 1 9.1546 5.1787 1.0929 39 1 7.5061 5.7606 1.5828 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754571885.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:33 Heat of formation + Delta-G solvation = -1.475155 kcal Electronic energy + Delta-G solvation = -20940.141958 eV Core-core repulsion = 17692.522489 eV Total energy + Delta-G solvation = -3247.619469 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.48791 -39.62227 -38.17625 -34.57378 -34.44746 -33.02566 -32.39248 -28.92455 -27.79410 -26.35395 -25.42427 -24.32656 -22.54960 -20.54418 -20.40459 -18.65264 -17.79436 -17.43185 -16.77071 -16.26706 -16.14722 -15.68286 -15.45037 -14.72302 -14.22978 -14.04056 -13.76221 -13.58614 -13.21598 -13.05223 -12.70463 -12.54687 -12.42542 -12.08572 -11.99989 -11.52857 -11.42581 -11.39371 -10.98800 -10.67911 -10.45756 -10.08643 -9.87662 -9.45223 -9.31941 -9.27429 -8.96108 -8.34541 -7.24154 -6.40722 -3.32359 2.44677 2.55886 2.70537 3.29023 3.31565 3.36258 3.55846 4.40874 4.49331 4.53722 4.65711 4.82287 4.82533 5.02675 5.16980 5.22846 5.32336 5.33861 5.49375 5.53668 5.67028 5.70913 5.79838 5.93888 5.95363 6.10093 6.14158 6.14659 6.25312 6.30018 6.53224 6.83249 7.00343 7.31923 7.54329 8.03137 8.12810 8.15577 8.88718 9.40596 10.26940 11.11527 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033377 B = 0.004088 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.689616 B = 6846.859520 C = 7150.596441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.511 3.489 4 O -0.543 6.543 5 N -0.719 5.719 6 C 0.101 3.899 7 C 0.509 3.491 8 O -0.551 6.551 9 N -0.574 5.574 10 C 0.076 3.924 11 C 0.096 3.904 12 C 0.111 3.889 13 N -0.625 5.625 14 C -0.305 4.305 15 H 0.083 0.917 16 C -0.023 4.023 17 N -0.931 5.931 18 Si 1.067 2.933 19 H -0.294 1.294 20 H -0.293 1.293 21 H -0.287 1.287 22 C 0.087 3.913 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.412 0.588 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.262 0.738 38 H 0.059 0.941 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.840 -18.469 1.290 20.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.298 3.702 4 O -0.420 6.420 5 N -0.375 5.375 6 C -0.026 4.026 7 C 0.296 3.704 8 O -0.430 6.430 9 N -0.304 5.304 10 C -0.067 4.067 11 C -0.009 4.009 12 C -0.017 4.017 13 N -0.354 5.354 14 C -0.431 4.431 15 H 0.101 0.899 16 C -0.222 4.222 17 N -0.573 5.573 18 Si 0.900 3.100 19 H -0.221 1.221 20 H -0.221 1.221 21 H -0.214 1.214 22 C -0.039 4.039 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.249 0.751 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.944 -17.460 2.762 20.282 hybrid contribution 0.414 -0.647 -1.682 1.849 sum -9.530 -18.107 1.080 20.490 Atomic orbital electron populations 1.21533 0.92924 1.01571 1.03435 1.21614 0.98632 0.93439 1.04571 1.20818 0.81585 0.92122 0.75655 1.90714 1.55305 1.46550 1.49422 1.45813 1.07647 1.08386 1.75652 1.21103 0.91430 0.85191 1.04869 1.20408 0.89522 0.83818 0.76630 1.90646 1.69873 1.30978 1.51540 1.47323 1.06257 1.06176 1.70634 1.22005 0.95901 0.85720 1.03057 1.22583 0.79334 0.99287 0.99701 1.22765 0.97690 0.86301 0.94930 1.46145 1.86702 1.01528 1.01074 1.20094 1.48431 0.78278 0.96345 0.89935 1.25699 0.99041 0.93232 1.04266 1.70918 1.51178 1.14473 1.20728 0.83753 0.76129 0.74190 0.75917 1.22128 1.22135 1.21361 1.23188 0.98420 0.89719 0.92546 0.91938 0.91945 0.92062 0.88772 0.88765 0.75083 0.88313 0.88303 0.91968 0.92105 0.88191 0.87465 0.93439 0.93325 0.92790 0.92332 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.20 37.16 0.34 -0.71 16 2 C -0.14 -1.06 6.42 -27.88 -0.18 -1.24 16 3 C 0.51 5.83 7.83 -10.98 -0.09 5.75 16 4 O -0.54 -8.20 15.98 5.56 0.09 -8.11 16 5 N -0.72 -8.06 5.53 -61.47 -0.34 -8.40 16 6 C 0.10 1.26 4.71 -5.20 -0.02 1.23 16 7 C 0.51 7.52 7.74 -10.99 -0.09 7.43 16 8 O -0.55 -9.09 15.18 5.55 0.08 -9.00 16 9 N -0.57 -9.25 3.12 -173.56 -0.54 -9.79 16 10 C 0.08 1.22 9.35 59.85 0.56 1.78 16 11 C 0.10 1.66 4.67 -67.68 -0.32 1.34 16 12 C 0.11 2.10 8.31 -8.50 -0.07 2.03 16 13 N -0.63 -14.25 2.40 -184.63 -0.44 -14.69 16 14 C -0.31 -8.23 10.70 -15.06 -0.16 -8.39 16 15 H 0.08 2.38 8.05 -52.49 -0.42 1.96 16 16 C -0.02 -0.65 5.50 -17.43 -0.10 -0.75 16 17 N -0.93 -28.35 13.71 55.49 0.76 -27.59 16 18 Si 1.07 25.48 24.77 -169.99 -4.21 21.27 16 19 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 20 H -0.29 -6.45 6.53 56.52 0.37 -6.08 16 21 H -0.29 -6.43 6.16 56.52 0.35 -6.08 16 22 C 0.09 1.73 4.73 -8.37 -0.04 1.70 16 23 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 24 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.41 4.21 7.44 -40.82 -0.30 3.90 16 29 H 0.10 1.18 7.40 -51.93 -0.38 0.80 16 30 H 0.10 1.21 8.11 -51.93 -0.42 0.79 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 33 H 0.10 1.96 4.97 -51.93 -0.26 1.70 16 34 H 0.11 1.74 7.29 -51.93 -0.38 1.36 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.26 7.90 8.73 -40.82 -0.36 7.55 16 38 H 0.06 1.13 7.67 -51.93 -0.40 0.73 16 39 H 0.06 1.15 3.90 -51.93 -0.20 0.94 16 LS Contribution 314.67 15.07 4.74 4.74 Total: -1.00 -32.61 314.67 -5.73 -38.34 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.72 Total: 3.07 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -0.16 Total: 10.17 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: -0.56 Total: -60.47 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.17 Total: -17.12 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -4.21 Total: 21.27 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.61 -5.73 -38.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754571885.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.864 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds