Wall clock time and date at job start Mon Mar 30 2020 02:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36942 * 120.00308 * 2 1 4 4 H 1.07995 * 119.99805 * 203.04889 * 3 2 1 5 5 C 1.38810 * 119.99716 * 23.04420 * 3 2 1 6 6 N 1.31610 * 120.00178 * 12.93522 * 5 3 2 7 7 Si 1.86804 * 119.99715 * 192.94016 * 5 3 2 8 8 H 1.48496 * 109.47262 * 359.97438 * 7 5 3 9 9 H 1.48504 * 109.47075 * 120.00010 * 7 5 3 10 10 H 1.48502 * 109.46875 * 239.99935 * 7 5 3 11 11 C 1.46502 * 120.00039 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47647 * 89.99876 * 11 2 1 13 13 N 1.46494 * 109.47529 * 180.02562 * 12 11 2 14 14 C 1.34775 * 120.00056 * 179.97438 * 13 12 11 15 15 O 1.21276 * 120.00123 * 0.02562 * 14 13 12 16 16 C 1.50705 * 120.00106 * 179.97438 * 14 13 12 17 17 H 1.09006 * 110.28453 * 318.03013 * 16 14 13 18 18 C 1.54477 * 110.24521 * 80.00164 * 16 14 13 19 19 C 1.54632 * 101.79837 * 93.60355 * 18 16 14 20 20 C 1.51283 * 104.19211 * 24.78048 * 19 18 16 21 21 O 1.21282 * 124.94055 * 163.71364 * 20 19 18 22 22 N 1.34415 * 110.11741 * 343.74680 * 20 19 18 23 23 C 1.46495 * 124.35118 * 179.58887 * 22 20 19 24 24 H 1.08997 * 109.46656 * 275.12629 * 1 2 3 25 25 H 1.08997 * 109.46812 * 35.12502 * 1 2 3 26 26 H 1.08997 * 109.47080 * 155.11887 * 1 2 3 27 27 H 0.97001 * 120.00399 * 179.97438 * 6 5 3 28 28 H 1.09002 * 109.47079 * 330.00090 * 11 2 1 29 29 H 1.09007 * 109.47207 * 210.00162 * 11 2 1 30 30 H 1.09002 * 109.46707 * 59.99986 * 12 11 2 31 31 H 1.09007 * 109.47050 * 300.00382 * 12 11 2 32 32 H 0.97005 * 119.99755 * 359.97438 * 13 12 11 33 33 H 1.09003 * 110.97150 * 335.46925 * 18 16 14 34 34 H 1.09001 * 110.97366 * 211.74001 * 18 16 14 35 35 H 1.08998 * 110.48428 * 143.46072 * 19 18 16 36 36 H 1.08998 * 110.48426 * 265.97064 * 19 18 16 37 37 H 1.09005 * 109.47031 * 359.97438 * 23 22 20 38 38 H 1.09001 * 109.47529 * 119.97202 * 23 22 20 39 39 H 1.08995 * 109.47489 * 239.97662 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1651 1.2232 -0.3662 5 6 1.5388 2.3401 0.4706 6 7 0.4120 2.2597 1.1458 7 14 2.3159 4.0073 0.1452 8 1 3.5699 3.8263 -0.6292 9 1 1.3716 4.8507 -0.6309 10 1 2.6243 4.6704 1.4378 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7099 -1.4432 13 7 3.1845 -2.9789 -1.4437 14 6 3.5209 -3.5623 -2.6111 15 8 3.2180 -3.0365 -3.6612 16 6 4.2744 -4.8675 -2.6117 17 1 5.0558 -4.8530 -1.8519 18 6 3.3056 -6.0441 -2.3598 19 6 2.9522 -6.4769 -3.8017 20 6 4.1316 -6.0130 -4.6278 21 8 4.3862 -6.3945 -5.7505 22 7 4.8567 -5.1171 -3.9361 23 6 6.0727 -4.4730 -4.4388 24 1 -0.3632 0.0918 1.0236 25 1 -0.3633 0.8405 -0.5913 26 1 -0.3633 -0.9323 -0.4324 27 1 -0.0148 3.0662 1.4750 28 1 1.6084 -2.0286 0.5129 29 1 3.1500 -1.1386 0.5134 30 1 3.0416 -0.9500 -1.9567 31 1 1.5001 -1.8400 -1.9571 32 1 3.4270 -3.3992 -0.6038 33 1 2.4171 -5.7100 -1.8240 34 1 3.8032 -6.8507 -1.8213 35 1 2.8480 -7.5603 -3.8600 36 1 2.0360 -5.9880 -4.1329 37 1 6.2860 -4.8343 -5.4448 38 1 5.9279 -3.3929 -4.4639 39 1 6.9089 -4.7123 -3.7819 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663258253.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:07 Heat of formation + Delta-G solvation = -40.868735 kcal Electronic energy + Delta-G solvation = -20687.792335 eV Core-core repulsion = 17438.464632 eV Total energy + Delta-G solvation = -3249.327703 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.05965 -38.99330 -36.50376 -35.95498 -34.30519 -33.03050 -31.42884 -29.21734 -27.43180 -26.85719 -25.89838 -23.71728 -22.56194 -20.79401 -20.58397 -19.51216 -17.78296 -16.99387 -16.74207 -16.13689 -15.60873 -15.19184 -15.16672 -14.63468 -14.17184 -13.82260 -13.79042 -13.52346 -13.34200 -12.98498 -12.81177 -12.54332 -12.39848 -12.38351 -11.72313 -11.59129 -11.23969 -10.96387 -10.90773 -10.64870 -10.40643 -10.14112 -10.00658 -9.98623 -9.91968 -8.88138 -8.84287 -8.61087 -6.85347 -5.79330 -3.27785 2.36694 2.55055 2.70993 3.30945 3.35133 3.42679 3.44728 4.03527 4.11696 4.41829 4.47308 4.64847 4.82424 5.00521 5.12365 5.31715 5.34388 5.35202 5.47806 5.56209 5.57001 5.61658 5.72726 5.81878 6.16883 6.19334 6.47853 6.56483 6.69343 6.78936 6.85744 7.31220 7.58407 7.66034 7.75348 7.97349 8.26283 8.33015 9.15890 9.78237 10.25846 11.25492 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034665 B = 0.003576 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.534692 B = 7828.025456 C = 8266.008051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.597 5.597 3 C -0.261 4.261 4 H 0.069 0.931 5 C 0.005 3.995 6 N -0.905 5.905 7 Si 0.905 3.095 8 H -0.278 1.278 9 H -0.288 1.288 10 H -0.289 1.289 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.719 5.719 14 C 0.494 3.506 15 O -0.529 6.529 16 C 0.112 3.888 17 H 0.112 0.888 18 C -0.119 4.119 19 C -0.156 4.156 20 C 0.525 3.475 21 O -0.534 6.534 22 N -0.600 5.600 23 C 0.093 3.907 24 H 0.034 0.966 25 H 0.042 0.958 26 H -0.001 1.001 27 H 0.253 0.747 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.398 0.602 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.325 -17.457 -2.640 19.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.320 5.320 3 C -0.391 4.391 4 H 0.087 0.913 5 C -0.194 4.194 6 N -0.550 5.550 7 Si 0.735 3.265 8 H -0.203 1.203 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.015 3.985 12 C -0.032 4.032 13 N -0.371 5.371 14 C 0.276 3.724 15 O -0.405 6.405 16 C 0.003 3.997 17 H 0.129 0.871 18 C -0.158 4.158 19 C -0.196 4.196 20 C 0.314 3.686 21 O -0.411 6.411 22 N -0.334 5.334 23 C -0.048 4.048 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.017 0.983 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.231 0.769 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.185 -17.049 -3.959 18.920 hybrid contribution 0.452 1.039 0.328 1.180 sum 7.637 -16.010 -3.631 18.106 Atomic orbital electron populations 1.20839 0.82282 0.95606 0.99642 1.43794 1.01964 1.00322 1.85921 1.19224 0.98383 0.85512 1.35943 0.91300 1.25026 0.97781 0.98632 0.97937 1.70072 1.19370 1.27261 1.38297 0.86179 0.78658 0.84134 0.77531 1.20252 1.21494 1.21638 1.20835 0.96770 0.89232 0.91623 1.22477 0.95615 0.82830 1.02255 1.46090 1.58121 1.25091 1.07782 1.20869 0.80477 0.86459 0.84551 1.90743 1.53853 1.64519 1.31340 1.21655 0.97138 0.94090 0.86770 0.87068 1.22590 0.99582 0.96419 0.97166 1.22353 0.98593 1.03905 0.94724 1.20815 0.83696 0.78281 0.85844 1.90714 1.72533 1.59719 1.18089 1.47794 1.26577 1.42698 1.16290 1.21607 0.84511 0.98184 1.00531 0.94817 0.93947 0.98262 0.93688 0.94027 0.92915 0.91559 0.92188 0.76872 0.88391 0.88567 0.87606 0.87406 0.89717 0.91633 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 8.98 59.85 0.54 4.39 16 2 N -0.60 -14.48 2.92 -181.12 -0.53 -15.01 16 3 C -0.26 -7.02 9.65 -15.06 -0.15 -7.16 16 4 H 0.07 1.81 7.86 -52.49 -0.41 1.40 16 5 C 0.00 0.13 5.10 -17.44 -0.09 0.05 16 6 N -0.91 -25.94 10.71 55.49 0.59 -25.35 16 7 Si 0.91 21.59 29.57 -169.99 -5.03 16.57 16 8 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 C 0.14 2.66 5.76 -4.04 -0.02 2.64 16 12 C 0.09 1.60 6.00 -4.05 -0.02 1.57 16 13 N -0.72 -8.85 5.56 -60.30 -0.33 -9.19 16 14 C 0.49 6.51 7.00 -10.98 -0.08 6.43 16 15 O -0.53 -9.69 16.55 5.56 0.09 -9.60 16 16 C 0.11 1.02 3.50 -68.13 -0.24 0.78 16 17 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 18 C -0.12 -0.78 6.69 -25.10 -0.17 -0.95 16 19 C -0.16 -1.40 6.85 -26.74 -0.18 -1.58 16 20 C 0.53 6.87 8.02 -10.86 -0.09 6.78 16 21 O -0.53 -8.97 17.35 5.56 0.10 -8.87 16 22 N -0.60 -6.92 2.55 -173.98 -0.44 -7.37 16 23 C 0.09 0.96 11.14 59.84 0.67 1.63 16 24 H 0.03 0.87 7.34 -51.93 -0.38 0.48 16 25 H 0.04 1.10 7.34 -51.93 -0.38 0.72 16 26 H 0.00 -0.03 8.03 -51.93 -0.42 -0.44 16 27 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 29 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.40 3.44 8.47 -40.82 -0.35 3.10 16 33 H 0.10 0.57 7.89 -51.93 -0.41 0.16 16 34 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 0.92 7.53 -51.93 -0.39 0.53 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 329.25 15.07 4.96 4.96 Total: -1.00 -35.38 329.25 -6.51 -41.90 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -6.09 Total: -2.63 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: 0.17 Total: 14.58 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.71 Total: -56.91 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.19 Total: -18.47 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.38 -6.51 -41.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663258253.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.029 kcal (2) G-P(sol) polarization free energy of solvation -35.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds