Wall clock time and date at job start Mon Mar 30 2020 02:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36942 * 120.00308 * 2 1 4 4 H 1.07995 * 119.99805 * 203.04889 * 3 2 1 5 5 C 1.38810 * 119.99716 * 23.04420 * 3 2 1 6 6 N 1.31610 * 120.00178 * 12.93522 * 5 3 2 7 7 Si 1.86804 * 119.99715 * 192.94016 * 5 3 2 8 8 H 1.48496 * 109.47262 * 359.97438 * 7 5 3 9 9 H 1.48504 * 109.47075 * 120.00010 * 7 5 3 10 10 H 1.48502 * 109.46875 * 239.99935 * 7 5 3 11 11 C 1.46502 * 120.00039 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47647 * 89.99876 * 11 2 1 13 13 N 1.46494 * 109.47529 * 180.02562 * 12 11 2 14 14 C 1.34775 * 120.00056 * 179.97438 * 13 12 11 15 15 O 1.21276 * 120.00123 * 0.02562 * 14 13 12 16 16 C 1.50705 * 120.00106 * 179.97438 * 14 13 12 17 17 H 1.09006 * 110.28453 * 318.03013 * 16 14 13 18 18 C 1.54477 * 110.24521 * 80.00164 * 16 14 13 19 19 C 1.54632 * 101.79837 * 93.60355 * 18 16 14 20 20 C 1.51283 * 104.19211 * 24.78048 * 19 18 16 21 21 O 1.21282 * 124.94055 * 163.71364 * 20 19 18 22 22 N 1.34415 * 110.11741 * 343.74680 * 20 19 18 23 23 C 1.46495 * 124.35118 * 179.58887 * 22 20 19 24 24 H 1.08997 * 109.46656 * 275.12629 * 1 2 3 25 25 H 1.08997 * 109.46812 * 35.12502 * 1 2 3 26 26 H 1.08997 * 109.47080 * 155.11887 * 1 2 3 27 27 H 0.97001 * 120.00399 * 179.97438 * 6 5 3 28 28 H 1.09002 * 109.47079 * 330.00090 * 11 2 1 29 29 H 1.09007 * 109.47207 * 210.00162 * 11 2 1 30 30 H 1.09002 * 109.46707 * 59.99986 * 12 11 2 31 31 H 1.09007 * 109.47050 * 300.00382 * 12 11 2 32 32 H 0.97005 * 119.99755 * 359.97438 * 13 12 11 33 33 H 1.09003 * 110.97150 * 335.46925 * 18 16 14 34 34 H 1.09001 * 110.97366 * 211.74001 * 18 16 14 35 35 H 1.08998 * 110.48428 * 143.46072 * 19 18 16 36 36 H 1.08998 * 110.48426 * 265.97064 * 19 18 16 37 37 H 1.09005 * 109.47031 * 359.97438 * 23 22 20 38 38 H 1.09001 * 109.47529 * 119.97202 * 23 22 20 39 39 H 1.08995 * 109.47489 * 239.97662 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1651 1.2232 -0.3662 5 6 1.5388 2.3401 0.4706 6 7 0.4120 2.2597 1.1458 7 14 2.3159 4.0073 0.1452 8 1 3.5699 3.8263 -0.6292 9 1 1.3716 4.8507 -0.6309 10 1 2.6243 4.6704 1.4378 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7099 -1.4432 13 7 3.1845 -2.9789 -1.4437 14 6 3.5209 -3.5623 -2.6111 15 8 3.2180 -3.0365 -3.6612 16 6 4.2744 -4.8675 -2.6117 17 1 5.0558 -4.8530 -1.8519 18 6 3.3056 -6.0441 -2.3598 19 6 2.9522 -6.4769 -3.8017 20 6 4.1316 -6.0130 -4.6278 21 8 4.3862 -6.3945 -5.7505 22 7 4.8567 -5.1171 -3.9361 23 6 6.0727 -4.4730 -4.4388 24 1 -0.3632 0.0918 1.0236 25 1 -0.3633 0.8405 -0.5913 26 1 -0.3633 -0.9323 -0.4324 27 1 -0.0148 3.0662 1.4750 28 1 1.6084 -2.0286 0.5129 29 1 3.1500 -1.1386 0.5134 30 1 3.0416 -0.9500 -1.9567 31 1 1.5001 -1.8400 -1.9571 32 1 3.4270 -3.3992 -0.6038 33 1 2.4171 -5.7100 -1.8240 34 1 3.8032 -6.8507 -1.8213 35 1 2.8480 -7.5603 -3.8600 36 1 2.0360 -5.9880 -4.1329 37 1 6.2860 -4.8343 -5.4448 38 1 5.9279 -3.3929 -4.4639 39 1 6.9089 -4.7123 -3.7819 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663258253.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:06 Heat of formation + Delta-G solvation = -67.294540 kcal Electronic energy + Delta-G solvation = -20688.938244 eV Core-core repulsion = 17438.464632 eV Total energy + Delta-G solvation = -3250.473612 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -41.97381 -40.11590 -37.92109 -37.24410 -35.73362 -33.81690 -33.25425 -30.50730 -28.63532 -27.89050 -27.64577 -25.17794 -23.52180 -22.37764 -21.69873 -20.46687 -18.90474 -18.55252 -17.86955 -17.30588 -16.77653 -16.57578 -16.37048 -15.99505 -15.52217 -15.12136 -14.86508 -14.69653 -14.66929 -14.27055 -14.07502 -13.76360 -13.54166 -13.22216 -13.05479 -12.81337 -12.65765 -12.50711 -12.39864 -12.24439 -12.13660 -11.96117 -11.76825 -11.20200 -10.97846 -10.67501 -10.07689 -9.81590 -8.82711 -7.85334 -5.35246 1.38340 1.44878 1.47728 1.54963 1.56847 1.85719 2.28584 2.52676 3.27998 3.29268 3.46617 3.64183 3.88623 3.94161 4.19404 4.26038 4.30472 4.31940 4.39739 4.58743 4.70019 4.78555 4.79909 4.82701 4.96272 5.05038 5.08020 5.15173 5.32316 5.36869 5.50470 5.62764 5.70988 5.97167 6.31238 6.59649 7.02994 7.13057 7.27873 7.84331 8.26149 9.17760 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034665 B = 0.003576 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.534692 B = 7828.025456 C = 8266.008051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.617 5.617 3 C -0.266 4.266 4 H 0.070 0.930 5 C -0.049 4.049 6 N -0.935 5.935 7 Si 0.964 3.036 8 H -0.269 1.269 9 H -0.294 1.294 10 H -0.288 1.288 11 C 0.147 3.853 12 C 0.116 3.884 13 N -0.701 5.701 14 C 0.493 3.507 15 O -0.587 6.587 16 C 0.116 3.884 17 H 0.158 0.842 18 C -0.105 4.105 19 C -0.155 4.155 20 C 0.509 3.491 21 O -0.585 6.585 22 N -0.604 5.604 23 C 0.089 3.911 24 H 0.012 0.988 25 H 0.010 0.990 26 H 0.033 0.967 27 H 0.249 0.751 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.421 0.579 33 H 0.111 0.889 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.525 -19.369 -1.050 21.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.341 5.341 3 C -0.396 4.396 4 H 0.088 0.912 5 C -0.245 4.245 6 N -0.582 5.582 7 Si 0.793 3.207 8 H -0.193 1.193 9 H -0.221 1.221 10 H -0.215 1.215 11 C 0.020 3.980 12 C -0.012 4.012 13 N -0.354 5.354 14 C 0.278 3.722 15 O -0.467 6.467 16 C 0.008 3.992 17 H 0.175 0.825 18 C -0.143 4.143 19 C -0.194 4.194 20 C 0.299 3.701 21 O -0.466 6.466 22 N -0.336 5.336 23 C -0.052 4.052 24 H 0.030 0.970 25 H 0.029 0.971 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.259 0.741 33 H 0.129 0.871 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.425 -19.004 -2.312 20.915 hybrid contribution 0.108 1.590 -0.202 1.606 sum 8.533 -17.414 -2.513 19.554 Atomic orbital electron populations 1.20588 0.82630 0.95948 0.97955 1.44040 1.02238 1.01692 1.86103 1.19521 0.98467 0.86882 1.34756 0.91231 1.25738 0.98541 1.01730 0.98446 1.70211 1.20680 1.27608 1.39657 0.85249 0.77951 0.80295 0.77214 1.19336 1.22072 1.21475 1.20980 0.97016 0.87538 0.92475 1.21846 0.94720 0.84159 1.00426 1.45782 1.57219 1.23401 1.09043 1.21713 0.79575 0.87422 0.83470 1.90735 1.56108 1.66362 1.33459 1.21954 0.98426 0.92254 0.86548 0.82519 1.22743 0.99751 0.96127 0.95682 1.22417 0.96100 1.05224 0.95700 1.21629 0.84627 0.78296 0.85576 1.90673 1.73930 1.61613 1.20336 1.48045 1.26490 1.41862 1.17224 1.21681 0.85539 0.97106 1.00893 0.96973 0.97132 0.94853 0.94190 0.91131 0.92035 0.94861 0.93965 0.74116 0.87069 0.84469 0.85330 0.88533 0.91189 0.93149 0.88341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.31 8.98 127.77 1.15 9.46 16 2 N -0.62 -29.50 2.92 -726.95 -2.12 -31.62 16 3 C -0.27 -14.24 9.65 84.03 0.81 -13.43 16 4 H 0.07 3.63 7.86 -2.91 -0.02 3.61 16 5 C -0.05 -2.71 5.10 84.86 0.43 -2.28 16 6 N -0.94 -54.32 10.71 21.65 0.23 -54.09 16 7 Si 0.96 44.65 29.57 68.60 2.03 46.68 16 8 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 9 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 10 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 11 C 0.15 5.08 5.76 86.38 0.50 5.58 16 12 C 0.12 3.77 6.00 86.38 0.52 4.29 16 13 N -0.70 -15.17 5.56 -463.07 -2.57 -17.74 16 14 C 0.49 11.90 7.00 87.66 0.61 12.52 16 15 O -0.59 -21.46 16.55 -3.02 -0.05 -21.51 16 16 C 0.12 1.65 3.50 44.69 0.16 1.81 16 17 H 0.16 0.93 8.14 -2.38 -0.02 0.91 16 18 C -0.11 -0.87 6.69 31.65 0.21 -0.66 16 19 C -0.15 -2.40 6.85 30.59 0.21 -2.19 16 20 C 0.51 12.88 8.02 87.90 0.71 13.58 16 21 O -0.58 -20.09 17.35 -3.03 -0.05 -20.14 16 22 N -0.60 -12.85 2.55 -822.94 -2.09 -14.95 16 23 C 0.09 1.76 11.14 127.77 1.42 3.18 16 24 H 0.01 0.62 7.34 -2.39 -0.02 0.60 16 25 H 0.01 0.53 7.34 -2.39 -0.02 0.51 16 26 H 0.03 1.33 8.03 -2.39 -0.02 1.31 16 27 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 28 H 0.07 2.07 8.07 -2.39 -0.02 2.05 16 29 H 0.06 2.04 8.04 -2.38 -0.02 2.02 16 30 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.42 5.31 8.47 -92.70 -0.79 4.52 16 33 H 0.11 0.72 7.89 -2.39 -0.02 0.70 16 34 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 1.57 7.53 -2.38 -0.02 1.55 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -81.17 329.25 2.35 -78.82 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: 0.26 Total: 2.68 kcal Atomic # 6 Polarization: 25.14 SS G_CDS: 6.73 Total: 31.87 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -6.56 Total: -118.40 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -0.10 Total: -41.65 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -81.17 2.35 -78.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663258253.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.527 kcal (2) G-P(sol) polarization free energy of solvation -81.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds