Wall clock time and date at job start Mon Mar 30 2020 01:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46899 * 109.46469 * 2 1 4 4 C 1.46900 * 110.99657 * 160.41490 * 3 2 1 5 5 C 1.52999 * 109.47371 * 287.89562 * 4 3 2 6 6 C 1.50694 * 109.47492 * 179.47312 * 5 4 3 7 7 H 1.08002 * 119.99839 * 359.97438 * 6 5 4 8 8 C 1.37884 * 120.00422 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99251 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00163 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47340 * 90.00052 * 10 8 6 12 12 H 1.48502 * 109.46920 * 209.99823 * 10 8 6 13 13 H 1.48497 * 109.47220 * 329.99514 * 10 8 6 14 14 C 1.39314 * 111.00405 * 284.36705 * 3 2 1 15 15 C 1.37888 * 120.30381 * 296.03148 * 14 3 2 16 16 C 1.39141 * 120.74219 * 179.97438 * 15 14 3 17 17 C 1.36175 * 121.09476 * 0.06149 * 16 15 14 18 18 C 1.40514 * 119.95913 * 359.95665 * 17 16 15 19 19 C 1.40577 * 121.19996 * 180.02562 * 18 17 16 20 20 C 1.36104 * 119.65890 * 179.97438 * 19 18 17 21 21 C 1.39346 * 120.97635 * 359.97438 * 20 19 18 22 22 C 1.36155 * 120.96144 * 0.02562 * 21 20 19 23 23 C 1.40368 * 119.66823 * 359.95312 * 22 21 20 24 24 H 1.09003 * 109.46568 * 185.36177 * 1 2 3 25 25 H 1.08995 * 109.47028 * 305.35884 * 1 2 3 26 26 H 1.08996 * 109.47082 * 65.36080 * 1 2 3 27 27 H 1.08998 * 109.46797 * 240.00394 * 2 1 3 28 28 H 1.09000 * 109.46981 * 120.00011 * 2 1 3 29 29 H 1.09003 * 109.47387 * 47.89435 * 4 3 2 30 30 H 1.08999 * 109.47565 * 167.89221 * 4 3 2 31 31 H 1.09007 * 109.46997 * 299.47903 * 5 4 3 32 32 H 1.09000 * 109.47164 * 59.47493 * 5 4 3 33 33 H 0.97002 * 119.99147 * 179.97438 * 9 8 6 34 34 H 1.08002 * 119.62198 * 0.03497 * 15 14 3 35 35 H 1.08001 * 119.45249 * 180.02562 * 16 15 14 36 36 H 1.07998 * 120.01845 * 180.23243 * 17 16 15 37 37 H 1.07996 * 120.17238 * 359.95583 * 19 18 17 38 38 H 1.07997 * 119.50802 * 179.97438 * 20 19 18 39 39 H 1.08003 * 119.51508 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.16505 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4133 1.4507 0.4597 5 6 3.4665 1.1869 1.9658 6 6 4.8975 1.2415 2.4352 7 1 5.6898 1.4437 1.7297 8 6 5.1953 1.0332 3.7653 9 7 4.2303 0.7874 4.6244 10 14 6.9690 1.1016 4.3471 11 1 7.3059 2.4918 4.7459 12 1 7.1432 0.1967 5.5115 13 1 7.8679 0.6707 3.2465 14 6 1.8817 1.9634 -1.2599 15 6 2.5836 1.4625 -2.3360 16 6 2.4523 2.0327 -3.5984 17 6 1.6310 3.0988 -3.8066 18 6 0.8983 3.6397 -2.7366 19 6 0.0425 4.7393 -2.9222 20 6 -0.6529 5.2378 -1.8637 21 6 -0.5303 4.6738 -0.5954 22 6 0.2891 3.6082 -0.3789 23 6 1.0218 3.0668 -1.4468 24 1 -0.3632 -1.0232 0.0960 25 1 -0.3633 0.5947 0.8381 26 1 -0.3633 0.4284 -0.9341 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.0039 0.6978 -0.0621 30 1 3.8189 2.4404 0.2497 31 1 2.8834 1.9453 2.4884 32 1 3.0524 0.2009 2.1768 33 1 4.4398 0.6406 5.5601 34 1 3.2417 0.6175 -2.1974 35 1 3.0116 1.6234 -4.4267 36 1 1.5394 3.5254 -4.7945 37 1 -0.0625 5.1865 -3.8996 38 1 -1.3094 6.0829 -2.0090 39 1 -1.0929 5.0885 0.2280 40 1 0.3741 3.1809 0.6093 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019804692.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:34 Heat of formation + Delta-G solvation = 40.611547 kcal Electronic energy + Delta-G solvation = -20090.063006 eV Core-core repulsion = 17255.117816 eV Total energy + Delta-G solvation = -2834.945190 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.43937 -37.84253 -35.70997 -33.24430 -31.88970 -30.86914 -30.14569 -29.38606 -27.35968 -24.34214 -23.31639 -22.83962 -22.37159 -20.94397 -19.64830 -17.25605 -17.07623 -16.30165 -16.07477 -15.01690 -14.86649 -14.56741 -14.29954 -13.76954 -13.59426 -13.25997 -13.21837 -13.09190 -12.65736 -12.22694 -11.98671 -11.73986 -11.50129 -11.15541 -11.09678 -10.94610 -10.87193 -10.80656 -10.60885 -10.55404 -9.88997 -9.68254 -9.38994 -9.14217 -8.46132 -8.34579 -7.94424 -7.55926 -6.00966 -4.03438 0.69544 1.17908 2.22054 3.14569 3.31713 3.37953 3.40929 4.19892 4.28190 4.48738 4.83002 5.00043 5.08457 5.18140 5.24138 5.34642 5.38467 5.52202 5.55063 5.58084 5.64363 5.74902 5.89486 6.06351 6.13072 6.19196 6.23280 6.30241 6.38041 6.41174 6.45276 6.54171 6.59976 6.70052 6.85064 6.91010 6.95961 7.16995 7.36189 7.64277 7.83695 7.93014 8.06484 8.40715 9.03396 9.60329 11.10278 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021711 B = 0.004618 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.356224 B = 6061.136666 C = 6190.108048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 N -0.509 5.509 4 C 0.069 3.931 5 C 0.031 3.969 6 C -0.523 4.523 7 H 0.054 0.946 8 C 0.060 3.940 9 N -0.892 5.892 10 Si 0.892 3.108 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.135 3.865 15 C -0.165 4.165 16 C -0.099 4.099 17 C -0.128 4.128 18 C -0.044 4.044 19 C -0.123 4.123 20 C -0.111 4.111 21 C -0.139 4.139 22 C -0.068 4.068 23 C -0.040 4.040 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.032 0.968 28 H 0.089 0.911 29 H 0.026 0.974 30 H 0.061 0.939 31 H 0.025 0.975 32 H 0.019 0.981 33 H 0.260 0.740 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.377 3.997 -15.120 18.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 N -0.231 5.231 4 C -0.056 4.056 5 C -0.007 4.007 6 C -0.561 4.561 7 H 0.072 0.928 8 C -0.142 4.142 9 N -0.531 5.531 10 Si 0.719 3.281 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.040 3.960 15 C -0.185 4.185 16 C -0.118 4.118 17 C -0.146 4.146 18 C -0.044 4.044 19 C -0.141 4.141 20 C -0.129 4.129 21 C -0.157 4.157 22 C -0.086 4.086 23 C -0.041 4.041 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.108 0.892 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.685 4.201 -14.568 17.991 hybrid contribution 1.562 -0.401 -0.181 1.622 sum -8.123 3.799 -14.749 17.261 Atomic orbital electron populations 1.21746 0.95410 1.01060 1.01910 1.22220 0.95678 0.87754 1.01589 1.59627 1.24104 1.18331 1.21033 1.22443 0.83241 0.99923 0.99949 1.19087 0.96715 0.97439 0.87412 1.21165 0.92760 1.48712 0.93511 0.92820 1.24974 0.97118 0.95242 0.96835 1.69975 1.31588 1.48508 1.03061 0.86602 0.85177 0.77941 0.78332 1.20628 1.21208 1.19931 1.18996 0.93914 0.93681 0.89409 1.21651 1.01690 1.01709 0.93463 1.20654 0.98258 0.96155 0.96700 1.20878 0.98217 0.97605 0.97932 1.18029 0.97440 0.96054 0.92915 1.20899 0.97650 0.96525 0.99007 1.20818 0.99314 0.99658 0.93104 1.20878 1.00330 0.97481 0.97016 1.21215 0.93469 0.94577 0.99330 1.17978 0.97580 0.95601 0.92980 0.92706 0.91718 0.93541 0.94969 0.89230 0.95521 0.92049 0.95659 0.96323 0.92985 0.86240 0.86450 0.86097 0.86079 0.86493 0.86228 0.84191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.95 37.16 0.37 -1.71 16 2 C 0.05 0.89 5.47 -3.82 -0.02 0.87 16 3 N -0.51 -9.31 3.51 -170.82 -0.60 -9.91 16 4 C 0.07 1.47 4.39 -3.82 -0.02 1.45 16 5 C 0.03 0.79 5.05 -27.89 -0.14 0.65 16 6 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 7 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 10 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 14 C 0.13 2.26 4.05 -83.49 -0.34 1.92 16 15 C -0.16 -2.51 8.45 -39.37 -0.33 -2.84 16 16 C -0.10 -1.28 9.93 -39.99 -0.40 -1.68 16 17 C -0.13 -1.62 9.75 -39.47 -0.38 -2.00 16 18 C -0.04 -0.62 5.74 -106.85 -0.61 -1.24 16 19 C -0.12 -1.48 9.77 -39.47 -0.39 -1.87 16 20 C -0.11 -1.30 9.95 -39.94 -0.40 -1.69 16 21 C -0.14 -1.81 9.95 -39.92 -0.40 -2.21 16 22 C -0.07 -1.05 9.54 -39.53 -0.38 -1.43 16 23 C -0.04 -0.65 5.75 -106.69 -0.61 -1.26 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.05 0.67 7.84 -51.93 -0.41 0.26 16 27 H 0.03 0.50 6.96 -51.93 -0.36 0.14 16 28 H 0.09 1.64 6.25 -51.93 -0.32 1.32 16 29 H 0.03 0.55 7.63 -51.93 -0.40 0.16 16 30 H 0.06 1.34 7.97 -51.93 -0.41 0.93 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.02 0.50 6.53 -51.93 -0.34 0.16 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.12 1.78 7.26 -52.49 -0.38 1.40 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 40 H 0.14 2.30 7.55 -52.49 -0.40 1.91 16 LS Contribution 328.71 15.07 4.95 4.95 Total: -1.00 -30.07 328.71 -10.33 -40.40 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.94 Total: 0.31 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: -4.46 Total: -26.45 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.14 Total: -35.80 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.07 -10.33 -40.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019804692.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.015 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds