Wall clock time and date at job start Mon Mar 30 2020 01:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46899 * 109.46469 * 2 1 4 4 C 1.46900 * 110.99657 * 160.41490 * 3 2 1 5 5 C 1.52999 * 109.47371 * 287.89562 * 4 3 2 6 6 C 1.50694 * 109.47492 * 179.47312 * 5 4 3 7 7 H 1.08002 * 119.99839 * 359.97438 * 6 5 4 8 8 C 1.37884 * 120.00422 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99251 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00163 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47340 * 90.00052 * 10 8 6 12 12 H 1.48502 * 109.46920 * 209.99823 * 10 8 6 13 13 H 1.48497 * 109.47220 * 329.99514 * 10 8 6 14 14 C 1.39314 * 111.00405 * 284.36705 * 3 2 1 15 15 C 1.37888 * 120.30381 * 296.03148 * 14 3 2 16 16 C 1.39141 * 120.74219 * 179.97438 * 15 14 3 17 17 C 1.36175 * 121.09476 * 0.06149 * 16 15 14 18 18 C 1.40514 * 119.95913 * 359.95665 * 17 16 15 19 19 C 1.40577 * 121.19996 * 180.02562 * 18 17 16 20 20 C 1.36104 * 119.65890 * 179.97438 * 19 18 17 21 21 C 1.39346 * 120.97635 * 359.97438 * 20 19 18 22 22 C 1.36155 * 120.96144 * 0.02562 * 21 20 19 23 23 C 1.40368 * 119.66823 * 359.95312 * 22 21 20 24 24 H 1.09003 * 109.46568 * 185.36177 * 1 2 3 25 25 H 1.08995 * 109.47028 * 305.35884 * 1 2 3 26 26 H 1.08996 * 109.47082 * 65.36080 * 1 2 3 27 27 H 1.08998 * 109.46797 * 240.00394 * 2 1 3 28 28 H 1.09000 * 109.46981 * 120.00011 * 2 1 3 29 29 H 1.09003 * 109.47387 * 47.89435 * 4 3 2 30 30 H 1.08999 * 109.47565 * 167.89221 * 4 3 2 31 31 H 1.09007 * 109.46997 * 299.47903 * 5 4 3 32 32 H 1.09000 * 109.47164 * 59.47493 * 5 4 3 33 33 H 0.97002 * 119.99147 * 179.97438 * 9 8 6 34 34 H 1.08002 * 119.62198 * 0.03497 * 15 14 3 35 35 H 1.08001 * 119.45249 * 180.02562 * 16 15 14 36 36 H 1.07998 * 120.01845 * 180.23243 * 17 16 15 37 37 H 1.07996 * 120.17238 * 359.95583 * 19 18 17 38 38 H 1.07997 * 119.50802 * 179.97438 * 20 19 18 39 39 H 1.08003 * 119.51508 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.16505 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4133 1.4507 0.4597 5 6 3.4665 1.1869 1.9658 6 6 4.8975 1.2415 2.4352 7 1 5.6898 1.4437 1.7297 8 6 5.1953 1.0332 3.7653 9 7 4.2303 0.7874 4.6244 10 14 6.9690 1.1016 4.3471 11 1 7.3059 2.4918 4.7459 12 1 7.1432 0.1967 5.5115 13 1 7.8679 0.6707 3.2465 14 6 1.8817 1.9634 -1.2599 15 6 2.5836 1.4625 -2.3360 16 6 2.4523 2.0327 -3.5984 17 6 1.6310 3.0988 -3.8066 18 6 0.8983 3.6397 -2.7366 19 6 0.0425 4.7393 -2.9222 20 6 -0.6529 5.2378 -1.8637 21 6 -0.5303 4.6738 -0.5954 22 6 0.2891 3.6082 -0.3789 23 6 1.0218 3.0668 -1.4468 24 1 -0.3632 -1.0232 0.0960 25 1 -0.3633 0.5947 0.8381 26 1 -0.3633 0.4284 -0.9341 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.0039 0.6978 -0.0621 30 1 3.8189 2.4404 0.2497 31 1 2.8834 1.9453 2.4884 32 1 3.0524 0.2009 2.1768 33 1 4.4398 0.6406 5.5601 34 1 3.2417 0.6175 -2.1974 35 1 3.0116 1.6234 -4.4267 36 1 1.5394 3.5254 -4.7945 37 1 -0.0625 5.1865 -3.8996 38 1 -1.3094 6.0829 -2.0090 39 1 -1.0929 5.0885 0.2280 40 1 0.3741 3.1809 0.6093 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019804692.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:34 Heat of formation + Delta-G solvation = 25.973951 kcal Electronic energy + Delta-G solvation = -20090.697740 eV Core-core repulsion = 17255.117816 eV Total energy + Delta-G solvation = -2835.579923 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.56107 -39.12471 -36.82334 -35.29917 -33.07512 -32.53709 -31.17762 -30.78788 -28.76954 -26.23635 -24.48693 -23.87967 -23.67096 -22.57335 -21.00742 -18.75754 -18.29467 -17.85983 -17.19799 -16.58033 -16.35150 -16.17952 -15.58863 -15.08397 -14.84855 -14.60690 -14.38391 -14.21597 -14.12368 -13.65073 -13.48398 -13.19315 -12.92023 -12.76042 -12.67734 -12.47887 -12.15304 -12.08559 -11.90058 -11.89789 -11.73436 -11.38299 -11.31468 -10.63124 -10.55379 -9.50650 -9.37871 -8.63382 -8.21141 -6.32826 -0.36502 0.13187 1.15245 1.39137 1.40652 1.51572 2.11894 2.38728 2.87993 3.12062 3.22206 3.86262 3.99397 3.99881 4.10008 4.20295 4.27172 4.31982 4.37989 4.44895 4.54482 4.58003 4.64015 4.67261 4.74700 4.87201 4.99334 5.04316 5.15049 5.23042 5.26462 5.29886 5.40043 5.43789 5.53559 5.62151 5.68378 5.74260 5.80224 5.88509 6.01991 6.16352 6.26228 6.58162 6.83058 7.36161 8.90688 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021711 B = 0.004618 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.356224 B = 6061.136666 C = 6190.108048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.054 3.946 3 N -0.514 5.514 4 C 0.091 3.909 5 C 0.042 3.958 6 C -0.546 4.546 7 H 0.057 0.943 8 C 0.005 3.995 9 N -0.929 5.929 10 Si 0.965 3.035 11 H -0.273 1.273 12 H -0.280 1.280 13 H -0.263 1.263 14 C 0.099 3.901 15 C -0.166 4.166 16 C -0.109 4.109 17 C -0.113 4.113 18 C -0.064 4.064 19 C -0.114 4.114 20 C -0.115 4.115 21 C -0.131 4.131 22 C -0.104 4.104 23 C -0.057 4.057 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.028 0.972 30 H 0.050 0.950 31 H -0.009 1.009 32 H -0.001 1.001 33 H 0.264 0.736 34 H 0.115 0.885 35 H 0.147 0.853 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.152 0.848 39 H 0.136 0.864 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.354 5.252 -17.809 20.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.072 4.072 3 N -0.235 5.235 4 C -0.035 4.035 5 C 0.005 3.995 6 C -0.584 4.584 7 H 0.076 0.924 8 C -0.193 4.193 9 N -0.569 5.569 10 Si 0.789 3.211 11 H -0.198 1.198 12 H -0.205 1.205 13 H -0.188 1.188 14 C 0.005 3.995 15 C -0.186 4.186 16 C -0.127 4.127 17 C -0.130 4.130 18 C -0.065 4.065 19 C -0.132 4.132 20 C -0.133 4.133 21 C -0.149 4.149 22 C -0.122 4.122 23 C -0.058 4.058 24 H 0.094 0.906 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.010 0.990 32 H 0.017 0.983 33 H 0.073 0.927 34 H 0.133 0.867 35 H 0.165 0.835 36 H 0.177 0.823 37 H 0.175 0.825 38 H 0.170 0.830 39 H 0.154 0.846 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.674 5.457 -17.276 20.538 hybrid contribution 1.454 -0.725 0.591 1.729 sum -8.219 4.731 -16.684 19.191 Atomic orbital electron populations 1.21634 0.93592 1.02148 1.01482 1.22225 0.97148 0.87105 1.00754 1.59433 1.21770 1.19197 1.23121 1.21981 0.85579 0.99083 0.96872 1.18877 0.95264 0.95095 0.90312 1.21573 0.93786 1.48882 0.94168 0.92443 1.25923 1.01983 0.94524 0.96905 1.70111 1.34101 1.49211 1.03502 0.85449 0.79333 0.78249 0.78025 1.19837 1.20509 1.18771 1.19039 0.96442 0.95247 0.88822 1.21769 1.01048 1.01537 0.94265 1.20945 0.98925 0.96485 0.96382 1.21322 0.96221 0.96492 0.98988 1.18390 0.98567 0.97059 0.92445 1.21336 0.95956 0.95170 1.00699 1.21196 0.99609 1.00371 0.92093 1.21173 0.98940 0.96153 0.98621 1.21099 0.95998 0.96637 0.98454 1.18158 0.97746 0.95620 0.94242 0.90553 0.92985 0.93212 0.93881 0.91735 0.95356 0.93126 0.99043 0.98273 0.92704 0.86663 0.83485 0.82332 0.82472 0.83031 0.84643 0.86889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.94 9.95 71.99 0.72 -3.22 16 2 C 0.05 1.89 5.47 86.31 0.47 2.37 16 3 N -0.51 -20.02 3.51 -694.35 -2.44 -22.45 16 4 C 0.09 4.08 4.39 86.30 0.38 4.46 16 5 C 0.04 2.30 5.05 29.85 0.15 2.45 16 6 C -0.55 -31.80 9.11 25.60 0.23 -31.57 16 7 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 8 C 0.00 0.29 5.46 84.66 0.46 0.75 16 9 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 10 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 13 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 14 C 0.10 3.41 4.05 38.58 0.16 3.56 16 15 C -0.17 -5.01 8.45 22.40 0.19 -4.82 16 16 C -0.11 -2.57 9.93 22.01 0.22 -2.35 16 17 C -0.11 -2.45 9.75 22.34 0.22 -2.24 16 18 C -0.06 -1.68 5.74 -21.31 -0.12 -1.80 16 19 C -0.11 -2.33 9.77 22.34 0.22 -2.11 16 20 C -0.12 -2.33 9.95 22.04 0.22 -2.11 16 21 C -0.13 -3.31 9.95 22.05 0.22 -3.09 16 22 C -0.10 -3.33 9.54 22.30 0.21 -3.12 16 23 C -0.06 -1.84 5.75 -21.20 -0.12 -1.96 16 24 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.05 1.45 7.84 -2.39 -0.02 1.43 16 27 H 0.04 1.40 6.96 -2.39 -0.02 1.38 16 28 H 0.06 2.56 6.25 -2.39 -0.01 2.55 16 29 H 0.03 1.24 7.63 -2.39 -0.02 1.22 16 30 H 0.05 2.34 7.97 -2.39 -0.02 2.32 16 31 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 32 H 0.00 -0.06 6.53 -2.39 -0.02 -0.07 16 33 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.12 3.46 7.26 -2.91 -0.02 3.44 16 35 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 36 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 37 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 39 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 40 H 0.11 4.11 7.55 -2.91 -0.02 4.09 16 Total: -1.00 -67.96 328.71 4.70 -63.26 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 1.01 Total: 14.12 kcal Atomic # 6 Polarization: -48.61 SS G_CDS: 3.82 Total: -44.79 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -2.15 Total: -79.44 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -67.96 4.70 -63.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019804692.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.234 kcal (2) G-P(sol) polarization free energy of solvation -67.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds