Wall clock time and date at job start Mon Mar 30 2020 01:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46896 * 109.46815 * 2 1 4 4 C 1.46903 * 111.00032 * 291.27272 * 3 2 1 5 5 C 1.50706 * 109.46688 * 74.90016 * 4 3 2 6 6 H 1.07996 * 119.99775 * 4.32953 * 5 4 3 7 7 C 1.37878 * 119.99987 * 184.33036 * 5 4 3 8 8 N 1.31516 * 119.99637 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00121 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46784 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47063 * 120.00187 * 9 7 5 12 12 H 1.48498 * 109.47241 * 240.00085 * 9 7 5 13 13 C 1.46904 * 110.99830 * 167.32493 * 3 2 1 14 14 C 1.50694 * 109.47122 * 298.80833 * 13 3 2 15 15 C 1.36127 * 120.17435 * 267.62700 * 14 13 3 16 16 C 1.39336 * 120.98780 * 180.02562 * 15 14 13 17 17 C 1.36124 * 120.99467 * 359.92149 * 16 15 14 18 18 C 1.40499 * 119.65302 * 0.04721 * 17 16 15 19 19 C 1.40543 * 121.30215 * 179.97438 * 18 17 16 20 20 C 1.36086 * 119.65725 * 180.02562 * 19 18 17 21 21 C 1.39382 * 120.99794 * 359.94951 * 20 19 18 22 22 C 1.36091 * 120.98639 * 0.04897 * 21 20 19 23 23 C 1.40502 * 120.17649 * 87.64457 * 14 13 3 24 24 H 1.08997 * 109.47613 * 67.79063 * 1 2 3 25 25 H 1.09002 * 109.47028 * 187.78911 * 1 2 3 26 26 H 1.09004 * 109.46898 * 307.78645 * 1 2 3 27 27 H 1.09001 * 109.46741 * 240.00095 * 2 1 3 28 28 H 1.09004 * 109.47153 * 119.99943 * 2 1 3 29 29 H 1.09001 * 109.47240 * 194.89423 * 4 3 2 30 30 H 1.08999 * 109.47177 * 314.90264 * 4 3 2 31 31 H 0.96998 * 119.99927 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.46980 * 178.80573 * 13 3 2 33 33 H 1.09001 * 109.47047 * 58.80525 * 13 3 2 34 34 H 1.07999 * 119.50497 * 0.04219 * 15 14 13 35 35 H 1.08002 * 119.50297 * 179.97438 * 16 15 14 36 36 H 1.07994 * 120.17227 * 180.33131 * 17 16 15 37 37 H 1.08003 * 120.16911 * 0.02802 * 19 18 17 38 38 H 1.08004 * 119.50383 * 179.97438 * 20 19 18 39 39 H 1.07997 * 119.50870 * 180.02562 * 21 20 19 40 40 H 1.08007 * 120.16886 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7259 2.0472 -1.2780 5 6 0.2597 2.3899 -1.3408 6 1 -0.3752 2.2045 -0.4871 7 6 -0.2711 2.9400 -2.4883 8 7 0.5020 3.1653 -3.5280 9 14 -2.0886 3.3641 -2.5664 10 1 -2.7342 3.0155 -1.2753 11 1 -2.2470 4.8184 -2.8218 12 1 -2.7294 2.5962 -3.6641 13 6 3.4566 1.4353 0.3009 14 6 3.7031 0.8612 1.6722 15 6 3.7265 1.6772 2.7616 16 6 3.9534 1.1646 4.0372 17 6 4.1567 -0.1673 4.2314 18 6 4.1391 -1.0409 3.1312 19 6 4.3454 -2.4218 3.2919 20 6 4.3219 -3.2374 2.2028 21 6 4.0948 -2.7246 0.9268 22 6 3.8910 -1.3931 0.7328 23 6 3.9103 -0.5191 1.8332 24 1 -0.3634 0.3884 -0.9514 25 1 -0.3633 -1.0182 0.1393 26 1 -0.3633 0.6297 0.8122 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.3161 2.9600 -1.3583 30 1 1.9782 1.3778 -2.1004 31 1 0.1286 3.5520 -4.3354 32 1 3.7974 2.4703 0.2737 33 1 4.0037 0.8530 -0.4405 34 1 3.5665 2.7378 2.6352 35 1 3.9673 1.8339 4.8847 36 1 4.3260 -0.5510 5.2266 37 1 4.5217 -2.8335 4.2747 38 1 4.4811 -4.2981 2.3291 39 1 4.0808 -3.3939 0.0793 40 1 3.7159 -1.0100 -0.2618 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454523.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:47 Heat of formation + Delta-G solvation = 51.369176 kcal Electronic energy + Delta-G solvation = -20365.460187 eV Core-core repulsion = 17530.981484 eV Total energy + Delta-G solvation = -2834.478704 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.49391 -37.16488 -36.22491 -33.25111 -32.09342 -30.41002 -30.14173 -28.87890 -27.21323 -24.63946 -23.11956 -22.91365 -22.21789 -20.97148 -19.35557 -17.39207 -16.90946 -16.33652 -15.96915 -15.14447 -14.59629 -14.38195 -14.09469 -13.84311 -13.58237 -13.27673 -13.10524 -12.98500 -12.44949 -12.19748 -11.80561 -11.59354 -11.26739 -11.17122 -11.07291 -10.89372 -10.82760 -10.64255 -10.49212 -10.40299 -10.24902 -9.58968 -9.41324 -9.04384 -8.44871 -8.35825 -7.68633 -7.22338 -6.00698 -3.98283 0.68582 1.17076 2.20139 3.15225 3.31543 3.39533 3.44498 4.23728 4.45202 4.70579 4.90609 4.98221 5.09158 5.13569 5.18877 5.28321 5.33643 5.49299 5.51773 5.63002 5.77978 5.86011 6.05005 6.10565 6.16787 6.22690 6.30336 6.38707 6.40197 6.43982 6.58230 6.64281 6.68846 6.90149 6.94333 7.00860 7.16968 7.20721 7.35175 7.45972 7.85972 8.12480 8.21310 8.56015 9.07645 9.62380 11.09955 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026870 B = 0.004907 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.820876 B = 5705.317474 C = 6080.851209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.059 3.941 3 N -0.529 5.529 4 C 0.191 3.809 5 C -0.499 4.499 6 H 0.074 0.926 7 C 0.052 3.948 8 N -0.900 5.900 9 Si 0.893 3.107 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.087 3.913 14 C -0.048 4.048 15 C -0.105 4.105 16 C -0.108 4.108 17 C -0.122 4.122 18 C -0.051 4.051 19 C -0.114 4.114 20 C -0.117 4.117 21 C -0.128 4.128 22 C -0.096 4.096 23 C -0.045 4.045 24 H 0.091 0.909 25 H 0.028 0.972 26 H 0.052 0.948 27 H 0.018 0.982 28 H 0.061 0.939 29 H 0.025 0.975 30 H -0.004 1.004 31 H 0.259 0.741 32 H 0.080 0.920 33 H 0.033 0.967 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.517 -9.470 12.505 17.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.069 4.069 3 N -0.254 5.254 4 C 0.066 3.934 5 C -0.537 4.537 6 H 0.092 0.908 7 C -0.149 4.149 8 N -0.541 5.541 9 Si 0.721 3.279 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.041 4.041 14 C -0.048 4.048 15 C -0.124 4.124 16 C -0.126 4.126 17 C -0.140 4.140 18 C -0.051 4.051 19 C -0.132 4.132 20 C -0.135 4.135 21 C -0.146 4.146 22 C -0.114 4.114 23 C -0.045 4.045 24 H 0.110 0.890 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.079 0.921 29 H 0.043 0.957 30 H 0.014 0.986 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.251 -9.134 12.670 17.665 hybrid contribution -0.569 -0.155 -0.827 1.016 sum 7.682 -9.289 11.843 16.898 Atomic orbital electron populations 1.22111 0.95135 0.98509 1.04889 1.22195 0.96782 0.89559 0.98404 1.62285 1.10251 1.15533 1.37289 1.19808 0.97363 0.93289 0.82955 1.21394 0.93767 1.39347 0.99241 0.90822 1.24998 0.97984 0.96118 0.95782 1.69971 1.35253 1.44879 1.03955 0.86508 0.85326 0.78025 0.78027 1.19565 1.21104 1.21180 1.21073 0.91699 1.00227 0.91093 1.19835 0.96651 0.91908 0.96442 1.20747 0.99505 1.00380 0.91766 1.20840 0.99259 0.95392 0.97146 1.20902 1.02021 0.93530 0.97561 1.18048 1.00498 0.93704 0.92898 1.20942 1.01000 0.92405 0.98803 1.20790 1.00394 0.99588 0.92774 1.20804 1.01087 0.95527 0.97195 1.21311 0.97747 0.93518 0.98780 1.18005 1.00314 0.93369 0.92845 0.89024 0.95333 0.92876 0.96389 0.92080 0.95702 0.98576 0.93090 0.90166 0.94935 0.85709 0.86233 0.86086 0.86018 0.86397 0.86233 0.85227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.50 37.16 0.32 -2.76 16 2 C 0.06 1.18 4.12 -3.82 -0.02 1.16 16 3 N -0.53 -11.39 4.54 -237.51 -1.08 -12.47 16 4 C 0.19 4.88 4.74 -4.97 -0.02 4.85 16 5 C -0.50 -13.63 6.70 -34.44 -0.23 -13.86 16 6 H 0.07 2.00 5.80 -52.49 -0.30 1.70 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.46 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.09 1.59 4.87 -4.98 -0.02 1.56 16 14 C -0.05 -0.79 4.83 -104.53 -0.51 -1.29 16 15 C -0.11 -1.56 9.58 -39.93 -0.38 -1.95 16 16 C -0.11 -1.38 9.95 -39.93 -0.40 -1.78 16 17 C -0.12 -1.52 9.77 -39.49 -0.39 -1.91 16 18 C -0.05 -0.72 5.74 -106.83 -0.61 -1.34 16 19 C -0.11 -1.36 9.77 -39.49 -0.39 -1.74 16 20 C -0.12 -1.35 9.95 -39.93 -0.40 -1.75 16 21 C -0.13 -1.63 9.95 -39.93 -0.40 -2.03 16 22 C -0.10 -1.43 7.15 -39.49 -0.28 -1.71 16 23 C -0.04 -0.70 4.65 -106.83 -0.50 -1.20 16 24 H 0.09 2.13 5.60 -51.93 -0.29 1.84 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 1.12 7.67 -51.93 -0.40 0.72 16 27 H 0.02 0.37 7.03 -51.93 -0.37 0.00 16 28 H 0.06 1.15 4.38 -51.93 -0.23 0.93 16 29 H 0.02 0.67 7.83 -51.93 -0.41 0.27 16 30 H 0.00 -0.10 7.85 -51.93 -0.41 -0.51 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.08 1.44 7.88 -51.93 -0.41 1.03 16 33 H 0.03 0.59 6.56 -51.93 -0.34 0.24 16 34 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.13 2.02 4.87 -52.48 -0.26 1.77 16 LS Contribution 314.67 15.07 4.74 4.74 Total: -1.00 -29.82 314.67 -10.44 -40.26 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -5.50 Total: 1.12 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -4.32 Total: -24.39 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: -0.34 Total: -38.20 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.82 -10.44 -40.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454523.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.631 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds