Wall clock time and date at job start Mon Mar 30 2020 01:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.46983 * 180.02562 * 11 10 9 13 13 C 1.46847 * 111.00092 * 294.21578 * 12 11 10 14 14 C 1.53038 * 109.52364 * 174.15658 * 13 12 11 15 15 C 1.53122 * 109.27432 * 59.17966 * 14 13 12 16 16 C 1.53114 * 109.16137 * 302.34059 * 15 14 13 17 17 H 1.09000 * 109.50902 * 297.71942 * 16 15 14 18 18 C 1.52999 * 109.50635 * 177.59788 * 16 15 14 19 19 C 1.53004 * 109.47062 * 65.19660 * 18 16 15 20 20 C 1.50693 * 109.47224 * 180.02562 * 19 18 16 21 21 O 1.20826 * 120.00218 * 359.97438 * 20 19 18 22 22 O 1.34231 * 120.00353 * 180.02562 * 20 19 18 23 23 C 1.46846 * 111.00112 * 170.00136 * 12 11 10 24 24 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 26 26 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 27 27 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 28 28 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 29 29 H 1.08995 * 109.47672 * 300.00066 * 11 10 9 30 30 H 1.08998 * 109.47443 * 60.00612 * 11 10 9 31 31 H 1.09004 * 109.45934 * 294.17597 * 13 12 11 32 32 H 1.09003 * 109.46451 * 54.14251 * 13 12 11 33 33 H 1.08992 * 109.50777 * 299.23658 * 14 13 12 34 34 H 1.08999 * 109.53462 * 179.13690 * 14 13 12 35 35 H 1.09008 * 109.52195 * 182.44040 * 15 14 13 36 36 H 1.08997 * 109.52605 * 62.25191 * 15 14 13 37 37 H 1.09005 * 109.47383 * 185.20002 * 18 16 15 38 38 H 1.09007 * 109.47001 * 305.20103 * 18 16 15 39 39 H 1.08999 * 109.47043 * 300.00047 * 19 18 16 40 40 H 1.08998 * 109.46901 * 60.00031 * 19 18 16 41 41 H 0.96698 * 117.00135 * 179.97438 * 22 20 19 42 42 H 1.08997 * 109.46205 * 305.85839 * 23 12 11 43 43 H 1.09001 * 109.46187 * 65.82829 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0108 11 6 5.5516 -2.6364 -0.0166 12 7 6.0413 -4.0214 -0.0219 13 6 5.6913 -4.7082 1.2280 14 6 6.0866 -6.1833 1.1290 15 6 7.5926 -6.2869 0.8722 16 6 7.9376 -5.5229 -0.4091 17 1 7.4244 -5.9802 -1.2550 18 6 9.4492 -5.5708 -0.6411 19 6 9.8786 -7.0148 -0.9084 20 6 11.3675 -7.0621 -1.1363 21 8 12.0183 -6.0451 -1.0902 22 8 11.9706 -8.2338 -1.3915 23 6 7.4887 -4.0669 -0.2656 24 1 -0.4850 0.8400 -0.0004 25 1 3.8713 -0.6783 -0.8962 26 1 3.8786 -0.6819 0.8837 27 1 3.6619 -3.1521 0.8797 28 1 3.6545 -3.1485 -0.9003 29 1 5.9116 -2.1207 -0.9068 30 1 5.9183 -2.1245 0.8731 31 1 6.2236 -4.2444 2.0585 32 1 4.6172 -4.6305 1.3966 33 1 5.5443 -6.6511 0.3074 34 1 5.8409 -6.6899 2.0623 35 1 7.8714 -7.3345 0.7578 36 1 8.1360 -5.8540 1.7120 37 1 9.7047 -4.9507 -1.5004 38 1 9.9646 -5.1962 0.2434 39 1 9.6231 -7.6348 -0.0491 40 1 9.3632 -7.3893 -1.7928 41 1 12.9272 -8.2139 -1.5312 42 1 7.7200 -3.5234 -1.1817 43 1 8.0126 -3.6062 0.5720 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043585732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:54 Heat of formation + Delta-G solvation = -146.172238 kcal Electronic energy + Delta-G solvation = -20422.573693 eV Core-core repulsion = 17272.220031 eV Total energy + Delta-G solvation = -3150.353662 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.26358 -40.19278 -37.27147 -36.78715 -35.34136 -33.91544 -32.66563 -30.96267 -28.69881 -26.32658 -25.28895 -23.49829 -22.95193 -21.73174 -21.09531 -20.57725 -19.02111 -18.85926 -17.51352 -17.11942 -16.79628 -16.33528 -16.13637 -15.77348 -15.21456 -15.09849 -14.86069 -14.72469 -14.22144 -14.01117 -13.83244 -13.50595 -13.28823 -13.03044 -12.78408 -12.66227 -12.52376 -12.42279 -12.14968 -11.84166 -11.78856 -11.69443 -11.63590 -11.53537 -11.40773 -11.31394 -11.03880 -10.92426 -10.75452 -9.21568 -8.29331 -6.33442 1.26026 1.35615 1.37422 1.49675 2.20049 2.36262 2.97899 3.05691 3.72079 3.88022 3.90771 4.08840 4.18541 4.23305 4.27948 4.35096 4.51054 4.54382 4.60397 4.68225 4.69104 4.79420 4.81002 4.87570 4.90625 4.95101 4.98679 5.05114 5.11834 5.18698 5.21913 5.31216 5.42108 5.52145 5.58252 5.61726 5.66622 5.68213 6.16406 6.27775 6.31014 6.74629 7.03200 7.30996 8.87630 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039477 B = 0.002841 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.099841 B = 9852.941922 C =10329.883133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.247 1.247 7 C -0.532 4.532 8 H 0.030 0.970 9 C -0.010 4.010 10 C -0.086 4.086 11 C 0.064 3.936 12 N -0.545 5.545 13 C 0.047 3.953 14 C -0.112 4.112 15 C -0.114 4.114 16 C -0.075 4.075 17 H 0.085 0.915 18 C -0.096 4.096 19 C -0.110 4.110 20 C 0.481 3.519 21 O -0.559 6.559 22 O -0.516 6.516 23 C 0.058 3.942 24 H 0.266 0.734 25 H 0.019 0.981 26 H 0.017 0.983 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.028 0.972 31 H 0.027 0.973 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.425 0.575 42 H 0.072 0.928 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.662 -17.200 -0.218 30.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.171 1.171 7 C -0.570 4.570 8 H 0.048 0.952 9 C -0.048 4.048 10 C -0.124 4.124 11 C -0.064 4.064 12 N -0.269 5.269 13 C -0.081 4.081 14 C -0.150 4.150 15 C -0.152 4.152 16 C -0.093 4.093 17 H 0.103 0.897 18 C -0.135 4.135 19 C -0.147 4.147 20 C 0.325 3.675 21 O -0.451 6.451 22 O -0.330 6.330 23 C -0.070 4.070 24 H 0.075 0.925 25 H 0.037 0.963 26 H 0.035 0.965 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.286 0.714 42 H 0.091 0.909 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 24.050 -17.090 -0.523 29.508 hybrid contribution 0.616 1.498 0.564 1.715 sum 24.666 -15.592 0.041 29.180 Atomic orbital electron populations 1.70078 1.08309 1.28162 1.52763 1.26067 0.95680 1.03655 0.94137 0.85605 0.79409 0.78034 0.79264 1.19040 1.20910 1.17088 1.21499 0.92196 0.93047 1.50255 0.95198 1.19500 0.93857 0.95104 0.96358 1.21279 0.93808 0.96680 1.00655 1.22055 0.95102 0.88775 1.00419 1.61909 1.14356 1.15173 1.35484 1.22206 1.00445 0.95858 0.89589 1.21566 0.96932 0.93984 1.02522 1.21722 0.95212 1.01418 0.96830 1.21112 0.94379 0.94394 0.99444 0.89657 1.21327 0.94661 0.94970 1.02495 1.21497 0.86212 0.99855 1.07185 1.24007 0.92647 0.80090 0.70710 1.90733 1.68021 1.36974 1.49326 1.84517 1.30984 1.35218 1.82249 1.22171 0.86579 0.97835 1.00423 0.92499 0.96267 0.96465 0.93558 0.93277 0.90679 0.95392 0.95487 0.91977 0.91394 0.90362 0.89112 0.92253 0.91819 0.91957 0.85387 0.85551 0.71355 0.90905 0.95434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.99 13.96 21.45 0.30 -60.69 16 2 C 0.00 0.06 5.47 84.65 0.46 0.52 16 3 Si 0.95 45.17 27.46 68.60 1.88 47.05 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.25 -10.88 6.55 99.48 0.65 -10.23 16 7 C -0.53 -31.67 9.66 25.60 0.25 -31.42 16 8 H 0.03 1.96 7.99 -2.91 -0.02 1.93 16 9 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 10 C -0.09 -3.50 5.08 30.59 0.16 -3.35 16 11 C 0.06 2.08 4.96 86.30 0.43 2.51 16 12 N -0.54 -15.03 4.66 -896.35 -4.17 -19.20 16 13 C 0.05 1.20 5.29 86.33 0.46 1.65 16 14 C -0.11 -2.08 6.09 30.65 0.19 -1.90 16 15 C -0.11 -1.62 4.98 30.67 0.15 -1.47 16 16 C -0.07 -1.18 2.35 -10.74 -0.03 -1.21 16 17 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 18 C -0.10 -1.36 3.97 30.60 0.12 -1.24 16 19 C -0.11 -1.06 5.57 29.85 0.17 -0.90 16 20 C 0.48 6.79 8.33 71.23 0.59 7.38 16 21 O -0.56 -12.43 16.74 21.96 0.37 -12.06 16 22 O -0.52 -4.88 13.42 -51.43 -0.69 -5.57 16 23 C 0.06 1.27 4.74 86.33 0.41 1.68 16 24 H 0.27 15.84 8.31 -92.71 -0.77 15.06 16 25 H 0.02 0.89 7.56 -2.39 -0.02 0.87 16 26 H 0.02 0.81 7.21 -2.38 -0.02 0.79 16 27 H 0.05 1.91 6.43 -2.39 -0.02 1.90 16 28 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.07 2.34 7.99 -2.39 -0.02 2.32 16 30 H 0.03 0.90 8.12 -2.39 -0.02 0.88 16 31 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 1.83 6.21 -2.39 -0.01 1.82 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 0.83 6.70 -2.38 -0.02 0.81 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 1.05 8.10 -2.38 -0.02 1.03 16 38 H 0.06 1.01 8.10 -2.38 -0.02 0.99 16 39 H 0.13 0.75 6.63 -2.39 -0.02 0.74 16 40 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.43 0.90 9.10 -74.06 -0.67 0.22 16 42 H 0.07 1.60 8.01 -2.39 -0.02 1.58 16 43 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -74.12 339.16 1.41 -72.71 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: 0.25 Total: 5.87 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 3.48 Total: -28.10 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -3.87 Total: -79.89 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.32 Total: -17.63 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.05 kcal Total: -74.12 1.41 -72.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043585732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.467 kcal (2) G-P(sol) polarization free energy of solvation -74.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds