Wall clock time and date at job start Mon Mar 30 2020 01:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47158 * 2 1 4 4 N 1.46505 * 109.47205 * 186.43541 * 3 2 1 5 5 C 1.36934 * 119.99710 * 96.65890 * 4 3 2 6 6 H 1.08004 * 119.99921 * 174.05191 * 5 4 3 7 7 C 1.38817 * 120.00260 * 354.04128 * 5 4 3 8 8 N 1.31615 * 119.99730 * 324.96834 * 7 5 4 9 9 Si 1.86802 * 119.99974 * 144.96366 * 7 5 4 10 10 H 1.48499 * 109.46938 * 94.99378 * 9 7 5 11 11 H 1.48496 * 109.46844 * 214.99284 * 9 7 5 12 12 H 1.48499 * 109.47328 * 334.99651 * 9 7 5 13 13 C 1.46495 * 119.99942 * 276.65141 * 4 3 2 14 14 C 1.50700 * 109.47641 * 268.21406 * 13 4 3 15 15 C 1.36125 * 120.17498 * 264.88707 * 14 13 4 16 16 C 1.39332 * 120.98389 * 180.02562 * 15 14 13 17 17 C 1.36134 * 120.99539 * 359.91591 * 16 15 14 18 18 C 1.40500 * 119.64951 * 0.05422 * 17 16 15 19 19 C 1.40552 * 121.29405 * 179.97438 * 18 17 16 20 20 C 1.36091 * 119.64890 * 180.02562 * 19 18 17 21 21 C 1.39380 * 120.99793 * 359.95054 * 20 19 18 22 22 C 1.36087 * 120.99474 * 0.05066 * 21 20 19 23 23 C 1.40505 * 120.17022 * 84.90392 * 14 13 4 24 24 H 1.09006 * 109.46887 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47056 * 299.99442 * 1 2 3 26 26 H 1.08996 * 109.46831 * 60.00278 * 1 2 3 27 27 H 1.09000 * 109.47171 * 239.99623 * 2 1 3 28 28 H 1.09007 * 109.47190 * 120.00023 * 2 1 3 29 29 H 1.09001 * 109.47118 * 66.43625 * 3 2 1 30 30 H 1.08997 * 109.47605 * 306.43684 * 3 2 1 31 31 H 0.96997 * 119.99686 * 180.02562 * 8 7 5 32 32 H 1.09009 * 109.46676 * 148.21658 * 13 4 3 33 33 H 1.09003 * 109.47239 * 28.22085 * 13 4 3 34 34 H 1.08000 * 119.50886 * 0.03611 * 15 14 13 35 35 H 1.08002 * 119.50410 * 179.97438 * 16 15 14 36 36 H 1.07996 * 120.17232 * 180.33407 * 17 16 15 37 37 H 1.07993 * 120.17559 * 0.02968 * 19 18 17 38 38 H 1.08003 * 119.50026 * 179.97438 * 20 19 18 39 39 H 1.08003 * 119.50142 * 180.02562 * 21 20 19 40 40 H 1.07996 * 120.17912 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4968 1.4453 -0.1548 5 6 4.0534 1.6281 -1.3925 6 1 5.1242 1.7265 -1.4939 7 6 3.2414 1.6869 -2.5169 8 7 2.1561 0.9454 -2.5843 9 14 3.6892 2.8183 -3.9343 10 1 4.4471 2.0539 -4.9573 11 1 2.4494 3.3644 -4.5423 12 1 4.5272 3.9357 -3.4300 13 6 4.3581 1.2529 1.0145 14 6 4.7094 2.5937 1.6059 15 6 5.8728 3.2103 1.2603 16 6 6.2146 4.4498 1.7971 17 6 5.3945 5.0809 2.6816 18 6 4.1849 4.4756 3.0618 19 6 3.3126 5.0961 3.9726 20 6 2.1497 4.4794 4.3179 21 6 1.8078 3.2395 3.7809 22 6 2.6274 2.6088 2.8963 23 6 3.8381 3.2137 2.5172 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.7738 1.9219 0.9420 30 1 1.5857 1.9885 -0.8267 31 1 1.5890 0.9862 -3.3701 32 1 5.2706 0.7384 0.7129 33 1 3.8324 0.6541 1.7584 34 1 6.5406 2.7318 0.5593 35 1 7.1438 4.9173 1.5065 36 1 5.6701 6.0439 3.0854 37 1 3.5639 6.0572 4.3962 38 1 1.4814 4.9582 5.0183 39 1 0.8785 2.7720 4.0714 40 1 2.3493 1.6485 2.4880 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044373581.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:17 Heat of formation + Delta-G solvation = 65.038385 kcal Electronic energy + Delta-G solvation = -20699.050554 eV Core-core repulsion = 17865.164591 eV Total energy + Delta-G solvation = -2833.885963 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.04362 -36.57505 -35.86467 -33.01222 -31.98470 -30.74686 -29.86284 -28.94006 -25.69276 -25.50074 -22.91444 -22.51371 -22.06445 -20.60044 -19.35942 -17.14103 -16.86968 -16.29626 -15.76469 -15.04303 -14.24665 -13.96657 -13.80567 -13.64124 -13.27292 -13.03803 -12.94057 -12.81836 -12.42749 -12.16376 -11.72236 -11.43351 -11.24597 -10.99114 -10.73251 -10.71618 -10.64268 -10.39241 -10.29848 -10.03209 -10.01016 -9.80347 -9.32933 -9.14473 -8.28143 -8.17885 -7.41549 -6.91551 -5.86445 -3.00850 0.97287 1.45007 2.49594 3.38618 3.43755 3.50292 3.55899 4.47347 4.61881 4.98215 5.16243 5.24064 5.27245 5.39027 5.44991 5.58936 5.63382 5.76959 5.81682 5.90249 6.07697 6.15585 6.18324 6.22115 6.40449 6.49867 6.55110 6.60552 6.65492 6.67552 6.70516 6.82715 6.87840 6.96744 7.11750 7.17496 7.22502 7.32485 7.48687 7.63134 7.75709 8.02178 8.28640 9.18924 9.85041 10.30298 11.19653 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.016262 B = 0.007544 C = 0.005886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.357883 B = 3710.615231 C = 4755.838981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.161 3.839 4 N -0.583 5.583 5 C -0.261 4.261 6 H 0.074 0.926 7 C 0.012 3.988 8 N -0.874 5.874 9 Si 0.871 3.129 10 H -0.291 1.291 11 H -0.290 1.290 12 H -0.281 1.281 13 C 0.180 3.820 14 C -0.059 4.059 15 C -0.119 4.119 16 C -0.104 4.104 17 C -0.135 4.135 18 C -0.050 4.050 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.137 4.137 22 C -0.090 4.090 23 C -0.042 4.042 24 H 0.034 0.966 25 H 0.031 0.969 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.018 0.982 29 H 0.020 0.980 30 H 0.078 0.922 31 H 0.252 0.748 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.395 4.226 11.836 12.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.036 3.964 4 N -0.302 5.302 5 C -0.389 4.389 6 H 0.092 0.908 7 C -0.187 4.187 8 N -0.517 5.517 9 Si 0.699 3.301 10 H -0.218 1.218 11 H -0.216 1.216 12 H -0.207 1.207 13 C 0.053 3.947 14 C -0.063 4.063 15 C -0.138 4.138 16 C -0.122 4.122 17 C -0.154 4.154 18 C -0.050 4.050 19 C -0.137 4.137 20 C -0.137 4.137 21 C -0.155 4.155 22 C -0.108 4.108 23 C -0.043 4.043 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.114 0.886 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.244 4.164 11.663 12.447 hybrid contribution 0.111 0.818 -0.971 1.275 sum 1.356 4.982 10.692 11.873 Atomic orbital electron populations 1.21608 0.98219 0.99383 1.00214 1.22014 0.93256 1.00430 1.01032 1.20985 0.82683 0.94604 0.98137 1.44092 1.01002 1.83022 1.02098 1.19097 0.92408 1.44088 0.83288 0.90832 1.24561 0.97557 0.99746 0.96848 1.70295 1.17241 1.35323 1.28819 0.86753 0.77496 0.83016 0.82791 1.21796 1.21635 1.20657 1.19756 0.95408 0.89912 0.89634 1.21061 0.92378 1.00230 0.92629 1.20677 0.97548 0.95459 1.00127 1.20814 0.99228 0.95411 0.96756 1.20797 0.94500 0.99807 1.00249 1.18070 0.95165 0.94329 0.97425 1.20894 0.94856 0.99589 0.98347 1.20733 0.96940 0.95727 1.00295 1.20752 1.00055 0.95952 0.98744 1.21361 0.93218 1.00499 0.95691 1.18012 0.95124 0.93969 0.97173 0.94733 0.95016 0.92797 0.88633 0.96294 0.96215 0.90408 0.93769 0.92454 0.93263 0.86346 0.86782 0.86550 0.86396 0.86758 0.86559 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.91 37.16 0.37 -2.19 16 2 C -0.13 -2.76 5.72 -26.73 -0.15 -2.92 16 3 C 0.16 3.71 4.66 -4.04 -0.02 3.69 16 4 N -0.58 -13.87 2.52 -174.61 -0.44 -14.31 16 5 C -0.26 -6.90 9.62 -15.06 -0.14 -7.04 16 6 H 0.07 1.93 8.03 -52.48 -0.42 1.51 16 7 C 0.01 0.32 4.63 -17.43 -0.08 0.24 16 8 N -0.87 -23.81 9.36 55.49 0.52 -23.29 16 9 Si 0.87 21.36 29.67 -169.99 -5.04 16.31 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.18 3.64 5.34 -5.20 -0.03 3.61 16 14 C -0.06 -1.13 5.46 -104.53 -0.57 -1.71 16 15 C -0.12 -2.12 9.57 -39.93 -0.38 -2.50 16 16 C -0.10 -1.63 9.95 -39.93 -0.40 -2.03 16 17 C -0.14 -2.07 9.77 -39.49 -0.39 -2.45 16 18 C -0.05 -0.84 5.74 -106.83 -0.61 -1.45 16 19 C -0.12 -1.70 9.77 -39.48 -0.39 -2.09 16 20 C -0.12 -1.62 9.95 -39.93 -0.40 -2.02 16 21 C -0.14 -2.02 9.95 -39.93 -0.40 -2.42 16 22 C -0.09 -1.54 7.71 -39.48 -0.30 -1.84 16 23 C -0.04 -0.78 5.74 -106.83 -0.61 -1.39 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.10 2.41 6.60 -51.93 -0.34 2.06 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.02 0.42 4.48 -51.93 -0.23 0.19 16 30 H 0.08 2.05 5.98 -51.93 -0.31 1.73 16 31 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 32 H 0.06 1.13 7.95 -51.92 -0.41 0.72 16 33 H 0.05 0.93 6.63 -51.93 -0.34 0.58 16 34 H 0.12 2.02 8.05 -52.49 -0.42 1.60 16 35 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 38 H 0.11 1.23 8.06 -52.48 -0.42 0.80 16 39 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 40 H 0.14 2.35 4.68 -52.49 -0.25 2.10 16 LS Contribution 319.93 15.07 4.82 4.82 Total: -1.00 -28.16 319.93 -10.32 -38.48 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.67 Total: 2.51 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -4.50 Total: -24.52 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.08 Total: -37.60 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.04 Total: 16.31 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.16 -10.32 -38.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044373581.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.517 kcal (2) G-P(sol) polarization free energy of solvation -28.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds