Wall clock time and date at job start Mon Mar 30 2020 01:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47158 * 2 1 4 4 N 1.46505 * 109.47205 * 186.43541 * 3 2 1 5 5 C 1.36934 * 119.99710 * 96.65890 * 4 3 2 6 6 H 1.08004 * 119.99921 * 174.05191 * 5 4 3 7 7 C 1.38817 * 120.00260 * 354.04128 * 5 4 3 8 8 N 1.31615 * 119.99730 * 324.96834 * 7 5 4 9 9 Si 1.86802 * 119.99974 * 144.96366 * 7 5 4 10 10 H 1.48499 * 109.46938 * 94.99378 * 9 7 5 11 11 H 1.48496 * 109.46844 * 214.99284 * 9 7 5 12 12 H 1.48499 * 109.47328 * 334.99651 * 9 7 5 13 13 C 1.46495 * 119.99942 * 276.65141 * 4 3 2 14 14 C 1.50700 * 109.47641 * 268.21406 * 13 4 3 15 15 C 1.36125 * 120.17498 * 264.88707 * 14 13 4 16 16 C 1.39332 * 120.98389 * 180.02562 * 15 14 13 17 17 C 1.36134 * 120.99539 * 359.91591 * 16 15 14 18 18 C 1.40500 * 119.64951 * 0.05422 * 17 16 15 19 19 C 1.40552 * 121.29405 * 179.97438 * 18 17 16 20 20 C 1.36091 * 119.64890 * 180.02562 * 19 18 17 21 21 C 1.39380 * 120.99793 * 359.95054 * 20 19 18 22 22 C 1.36087 * 120.99474 * 0.05066 * 21 20 19 23 23 C 1.40505 * 120.17022 * 84.90392 * 14 13 4 24 24 H 1.09006 * 109.46887 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47056 * 299.99442 * 1 2 3 26 26 H 1.08996 * 109.46831 * 60.00278 * 1 2 3 27 27 H 1.09000 * 109.47171 * 239.99623 * 2 1 3 28 28 H 1.09007 * 109.47190 * 120.00023 * 2 1 3 29 29 H 1.09001 * 109.47118 * 66.43625 * 3 2 1 30 30 H 1.08997 * 109.47605 * 306.43684 * 3 2 1 31 31 H 0.96997 * 119.99686 * 180.02562 * 8 7 5 32 32 H 1.09009 * 109.46676 * 148.21658 * 13 4 3 33 33 H 1.09003 * 109.47239 * 28.22085 * 13 4 3 34 34 H 1.08000 * 119.50886 * 0.03611 * 15 14 13 35 35 H 1.08002 * 119.50410 * 179.97438 * 16 15 14 36 36 H 1.07996 * 120.17232 * 180.33407 * 17 16 15 37 37 H 1.07993 * 120.17559 * 0.02968 * 19 18 17 38 38 H 1.08003 * 119.50026 * 179.97438 * 20 19 18 39 39 H 1.08003 * 119.50142 * 180.02562 * 21 20 19 40 40 H 1.07996 * 120.17912 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4968 1.4453 -0.1548 5 6 4.0534 1.6281 -1.3925 6 1 5.1242 1.7265 -1.4939 7 6 3.2414 1.6869 -2.5169 8 7 2.1561 0.9454 -2.5843 9 14 3.6892 2.8183 -3.9343 10 1 4.4471 2.0539 -4.9573 11 1 2.4494 3.3644 -4.5423 12 1 4.5272 3.9357 -3.4300 13 6 4.3581 1.2529 1.0145 14 6 4.7094 2.5937 1.6059 15 6 5.8728 3.2103 1.2603 16 6 6.2146 4.4498 1.7971 17 6 5.3945 5.0809 2.6816 18 6 4.1849 4.4756 3.0618 19 6 3.3126 5.0961 3.9726 20 6 2.1497 4.4794 4.3179 21 6 1.8078 3.2395 3.7809 22 6 2.6274 2.6088 2.8963 23 6 3.8381 3.2137 2.5172 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.7738 1.9219 0.9420 30 1 1.5857 1.9885 -0.8267 31 1 1.5890 0.9862 -3.3701 32 1 5.2706 0.7384 0.7129 33 1 3.8324 0.6541 1.7584 34 1 6.5406 2.7318 0.5593 35 1 7.1438 4.9173 1.5065 36 1 5.6701 6.0439 3.0854 37 1 3.5639 6.0572 4.3962 38 1 1.4814 4.9582 5.0183 39 1 0.8785 2.7720 4.0714 40 1 2.3493 1.6485 2.4880 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044373581.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:17 Heat of formation + Delta-G solvation = 53.266740 kcal Electronic energy + Delta-G solvation = -20699.561011 eV Core-core repulsion = 17865.164591 eV Total energy + Delta-G solvation = -2834.396419 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.28646 -38.19243 -37.19380 -34.47871 -33.79778 -32.37563 -31.06673 -30.27885 -27.40541 -27.20157 -24.16394 -23.76128 -23.71876 -22.18065 -20.92916 -18.68963 -18.27219 -17.73063 -16.99094 -16.88263 -15.77759 -15.56375 -15.31374 -15.12560 -14.88449 -14.39041 -14.24821 -14.19524 -13.83941 -13.52428 -13.48421 -13.00056 -12.68496 -12.62341 -12.51315 -12.30157 -12.09263 -11.98575 -11.90640 -11.70927 -11.60631 -11.45945 -10.94432 -10.62003 -10.26010 -9.39911 -8.93263 -8.56041 -7.87682 -5.03385 -0.23899 0.22765 1.24953 1.41758 1.48425 1.56675 2.21764 2.55440 3.19477 3.29836 3.81934 3.84746 4.00349 4.12026 4.19670 4.26233 4.41985 4.49126 4.49784 4.61480 4.62504 4.72003 4.75050 4.87330 4.94080 4.95915 5.02629 5.18899 5.21907 5.35543 5.42409 5.45706 5.47403 5.49243 5.65374 5.67373 5.73805 5.81846 5.93594 6.08285 6.15188 6.26323 6.31466 7.20097 7.93036 8.34952 9.15603 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.016262 B = 0.007544 C = 0.005886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.357883 B = 3710.615231 C = 4755.838981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.119 4.119 3 C 0.169 3.831 4 N -0.597 5.597 5 C -0.264 4.264 6 H 0.067 0.933 7 C -0.033 4.033 8 N -0.891 5.891 9 Si 0.923 3.077 10 H -0.290 1.290 11 H -0.295 1.295 12 H -0.284 1.284 13 C 0.184 3.816 14 C -0.086 4.086 15 C -0.129 4.129 16 C -0.118 4.118 17 C -0.124 4.124 18 C -0.074 4.074 19 C -0.115 4.115 20 C -0.120 4.120 21 C -0.128 4.128 22 C -0.120 4.120 23 C -0.063 4.063 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.035 0.965 27 H 0.057 0.943 28 H 0.030 0.970 29 H 0.038 0.962 30 H 0.042 0.958 31 H 0.247 0.753 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.114 0.886 35 H 0.142 0.858 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.140 0.860 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.071 6.244 14.163 15.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.159 4.159 3 C 0.044 3.956 4 N -0.317 5.317 5 C -0.393 4.393 6 H 0.085 0.915 7 C -0.230 4.230 8 N -0.536 5.536 9 Si 0.753 3.247 10 H -0.217 1.217 11 H -0.222 1.222 12 H -0.210 1.210 13 C 0.058 3.942 14 C -0.089 4.089 15 C -0.148 4.148 16 C -0.135 4.135 17 C -0.142 4.142 18 C -0.074 4.074 19 C -0.133 4.133 20 C -0.138 4.138 21 C -0.146 4.146 22 C -0.138 4.138 23 C -0.064 4.064 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.132 0.868 35 H 0.160 0.840 36 H 0.170 0.830 37 H 0.169 0.831 38 H 0.169 0.831 39 H 0.158 0.842 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.945 6.190 14.019 15.354 hybrid contribution 0.246 0.234 -1.518 1.555 sum 1.191 6.424 12.501 14.105 Atomic orbital electron populations 1.21507 0.95949 1.00636 1.00427 1.21834 0.95264 0.99195 0.99582 1.20860 0.82330 0.95031 0.97369 1.44216 1.01656 1.83565 1.02307 1.19267 0.92281 1.43179 0.84614 0.91502 1.25056 0.98267 1.00963 0.98667 1.70408 1.17987 1.36209 1.29010 0.85924 0.76679 0.81358 0.80765 1.21734 1.22173 1.20986 1.19750 0.94556 0.91182 0.88683 1.20861 0.93847 0.99567 0.94643 1.20860 0.97275 0.96588 1.00095 1.21083 1.00680 0.94714 0.97059 1.21243 0.93413 1.00654 0.98855 1.18456 0.96463 0.94090 0.98360 1.21305 0.94315 1.00595 0.97085 1.21166 0.97265 0.95083 1.00264 1.21130 1.00154 0.96236 0.97054 1.21332 0.93973 1.00738 0.97737 1.18218 0.95522 0.95098 0.97518 0.92959 0.92725 0.94554 0.92466 0.95137 0.94411 0.94002 0.94394 0.93140 0.92470 0.86831 0.84016 0.83008 0.83071 0.83108 0.84209 0.85977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 9.91 71.98 0.71 -4.01 16 2 C -0.12 -5.24 5.72 30.59 0.18 -5.06 16 3 C 0.17 7.98 4.66 86.38 0.40 8.39 16 4 N -0.60 -29.35 2.52 -706.34 -1.78 -31.12 16 5 C -0.26 -14.45 9.62 84.03 0.81 -13.64 16 6 H 0.07 3.64 8.03 -2.91 -0.02 3.62 16 7 C -0.03 -1.81 4.63 84.86 0.39 -1.41 16 8 N -0.89 -50.34 9.36 21.65 0.20 -50.14 16 9 Si 0.92 45.22 29.67 68.60 2.04 47.25 16 10 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 11 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 12 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 13 C 0.18 7.70 5.34 85.63 0.46 8.16 16 14 C -0.09 -3.35 5.46 -19.80 -0.11 -3.45 16 15 C -0.13 -4.63 9.57 22.04 0.21 -4.42 16 16 C -0.12 -3.48 9.95 22.04 0.22 -3.26 16 17 C -0.12 -3.42 9.77 22.33 0.22 -3.20 16 18 C -0.07 -2.29 5.74 -21.30 -0.12 -2.41 16 19 C -0.12 -2.84 9.77 22.33 0.22 -2.62 16 20 C -0.12 -2.78 9.95 22.04 0.22 -2.56 16 21 C -0.13 -3.43 9.95 22.04 0.22 -3.21 16 22 C -0.12 -4.00 7.71 22.33 0.17 -3.83 16 23 C -0.06 -2.28 5.74 -21.30 -0.12 -2.40 16 24 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 25 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 2.98 6.60 -2.39 -0.02 2.96 16 28 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.04 1.64 4.48 -2.39 -0.01 1.63 16 30 H 0.04 2.27 5.98 -2.39 -0.01 2.26 16 31 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 32 H 0.05 2.10 7.95 -2.38 -0.02 2.08 16 33 H 0.06 2.23 6.63 -2.39 -0.02 2.21 16 34 H 0.11 4.01 8.05 -2.91 -0.02 3.99 16 35 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 36 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 37 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 40 H 0.12 4.26 4.68 -2.91 -0.01 4.24 16 Total: -1.00 -62.60 319.93 5.55 -57.04 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 1.02 Total: 15.92 kcal Atomic # 6 Polarization: -43.03 SS G_CDS: 4.07 Total: -38.95 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -1.58 Total: -81.27 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.04 Total: 47.25 kcal Total: -62.60 5.55 -57.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044373581.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.310 kcal (2) G-P(sol) polarization free energy of solvation -62.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds