Wall clock time and date at job start Mon Mar 30 2020 01:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99904 * 2 1 4 4 H 1.48496 * 109.47209 * 269.99947 * 3 2 1 5 5 H 1.48503 * 109.47224 * 29.99641 * 3 2 1 6 6 H 1.48505 * 109.47197 * 149.99407 * 3 2 1 7 7 C 1.37876 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99889 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99933 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46830 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46712 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.46711 * 179.97438 * 11 10 9 13 13 C 1.46847 * 111.00051 * 64.68060 * 12 11 10 14 14 C 1.53034 * 109.52585 * 185.83752 * 13 12 11 15 15 C 1.53122 * 109.27871 * 300.82159 * 14 13 12 16 16 C 1.53112 * 109.16212 * 57.64867 * 15 14 13 17 17 C 1.46850 * 110.99620 * 188.88420 * 12 11 10 18 18 H 1.08997 * 109.46417 * 294.17902 * 17 12 11 19 19 C 1.52994 * 109.46201 * 54.15011 * 17 12 11 20 20 C 1.53000 * 109.47378 * 181.74295 * 19 17 12 21 21 C 1.50697 * 109.47354 * 182.70111 * 20 19 17 22 22 O 1.20820 * 120.00018 * 359.97438 * 21 20 19 23 23 O 1.34234 * 119.99790 * 180.02562 * 21 20 19 24 24 H 0.97001 * 120.00193 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46849 * 60.00813 * 9 7 2 26 26 H 1.08997 * 109.47272 * 300.00481 * 9 7 2 27 27 H 1.09001 * 109.47137 * 60.00504 * 10 9 7 28 28 H 1.08997 * 109.47189 * 300.00046 * 10 9 7 29 29 H 1.09001 * 109.47071 * 60.00264 * 11 10 9 30 30 H 1.08997 * 109.47168 * 299.99859 * 11 10 9 31 31 H 1.08994 * 109.46688 * 65.81760 * 13 12 11 32 32 H 1.09005 * 109.45090 * 305.84260 * 13 12 11 33 33 H 1.08996 * 109.50619 * 180.87830 * 14 13 12 34 34 H 1.09002 * 109.50800 * 60.75630 * 14 13 12 35 35 H 1.09008 * 109.51851 * 297.74589 * 15 14 13 36 36 H 1.09001 * 109.52536 * 177.56144 * 15 14 13 37 37 H 1.09005 * 109.50320 * 62.29151 * 16 15 14 38 38 H 1.09003 * 109.50553 * 182.40807 * 16 15 14 39 39 H 1.09001 * 109.47202 * 301.73927 * 19 17 12 40 40 H 1.09000 * 109.47785 * 61.74041 * 19 17 12 41 41 H 1.09003 * 109.46660 * 302.69932 * 20 19 17 42 42 H 1.09002 * 109.46953 * 62.69405 * 20 19 17 43 43 H 0.96701 * 117.00037 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6364 0.0022 12 7 6.0413 -4.0214 0.0027 13 6 5.6649 -4.7131 -1.2368 14 6 6.0622 -6.1878 -1.1404 15 6 7.5733 -6.2907 -0.9151 16 6 7.9455 -5.5215 0.3554 17 6 7.4936 -4.0660 0.2156 18 1 7.9995 -3.6087 -0.6346 19 6 7.8456 -3.2982 1.4913 20 6 9.3626 -3.3076 1.6901 21 6 9.7044 -2.6088 2.9807 22 8 8.8250 -2.1499 3.6706 23 8 10.9860 -2.4952 3.3634 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6801 0.8912 26 1 3.8753 -0.6803 -0.8888 27 1 3.6587 -3.1501 -0.8893 28 1 3.6579 -3.1505 0.8907 29 1 5.9142 -2.1229 0.8927 30 1 5.9157 -2.1223 -0.8872 31 1 6.1794 -4.2528 -2.0802 32 1 4.5874 -4.6361 -1.3826 33 1 5.7969 -6.6975 -2.0666 34 1 5.5375 -6.6524 -0.3055 35 1 8.0987 -5.8611 -1.7681 36 1 7.8544 -7.3378 -0.8027 37 1 7.4503 -5.9755 1.2138 38 1 9.0256 -5.5551 0.4979 39 1 7.4970 -2.2692 1.4040 40 1 7.3642 -3.7735 2.3461 41 1 9.7174 -4.3374 1.7295 42 1 9.8411 -2.7899 0.8587 43 1 11.1560 -2.0392 4.1990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050925619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:16 Heat of formation + Delta-G solvation = -139.730134 kcal Electronic energy + Delta-G solvation = -21043.922445 eV Core-core repulsion = 17893.848134 eV Total energy + Delta-G solvation = -3150.074311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.32086 -40.32507 -37.14766 -36.43674 -35.03083 -34.70566 -32.74810 -30.70326 -28.74882 -26.48288 -25.48952 -23.62931 -22.59591 -21.53586 -21.32606 -20.54351 -19.02884 -18.88247 -17.71905 -17.14949 -16.64875 -16.35263 -16.10711 -15.72363 -15.47810 -15.01295 -14.77141 -14.64077 -14.19012 -14.10575 -13.79130 -13.51563 -13.36559 -12.98900 -12.77914 -12.65517 -12.54754 -12.49618 -12.13273 -11.91335 -11.81639 -11.63065 -11.59191 -11.52530 -11.42680 -11.36602 -10.96418 -10.88155 -10.76787 -9.17491 -8.30801 -6.34880 1.25436 1.33063 1.36098 1.48334 2.15930 2.34920 2.95258 3.04284 3.79200 3.84518 3.91755 4.02186 4.14065 4.23569 4.31180 4.36317 4.38745 4.50640 4.59559 4.65735 4.67591 4.75509 4.81272 4.86949 4.94193 4.99011 5.04815 5.10185 5.14788 5.18564 5.28701 5.31694 5.37729 5.50810 5.56944 5.60593 5.65453 5.66993 6.17803 6.30017 6.33711 6.73009 7.02525 7.29635 8.86351 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.014494 B = 0.004710 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.374516 B = 5943.625428 C = 7594.581103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.952 3.048 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.250 1.250 7 C -0.533 4.533 8 H 0.029 0.971 9 C -0.009 4.009 10 C -0.087 4.087 11 C 0.060 3.940 12 N -0.544 5.544 13 C 0.051 3.949 14 C -0.115 4.115 15 C -0.116 4.116 16 C -0.112 4.112 17 C 0.088 3.912 18 H 0.050 0.950 19 C -0.106 4.106 20 C -0.106 4.106 21 C 0.479 3.521 22 O -0.560 6.560 23 O -0.513 6.513 24 H 0.267 0.733 25 H 0.016 0.984 26 H 0.018 0.982 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.033 0.967 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.136 0.864 42 H 0.128 0.872 43 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.893 -10.825 0.076 28.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.775 3.225 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.173 1.173 7 C -0.571 4.571 8 H 0.048 0.952 9 C -0.047 4.047 10 C -0.125 4.125 11 C -0.068 4.068 12 N -0.269 5.269 13 C -0.077 4.077 14 C -0.152 4.152 15 C -0.154 4.154 16 C -0.149 4.149 17 C -0.020 4.020 18 H 0.068 0.932 19 C -0.144 4.144 20 C -0.143 4.143 21 C 0.324 3.676 22 O -0.451 6.451 23 O -0.327 6.327 24 H 0.075 0.925 25 H 0.034 0.966 26 H 0.036 0.964 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.115 0.885 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.154 0.846 42 H 0.146 0.854 43 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 26.229 -11.054 0.281 28.465 hybrid contribution -0.360 1.671 0.079 1.711 sum 25.869 -9.384 0.361 27.520 Atomic orbital electron populations 1.70075 1.08301 1.28183 1.52741 1.26039 0.95644 1.03562 0.94049 0.85633 0.79409 0.78133 0.79333 1.18797 1.20792 1.17321 1.21499 0.92182 0.93068 1.50353 0.95249 1.19487 0.93895 0.95096 0.96247 1.21290 0.94120 0.96642 1.00485 1.22138 0.94879 0.89188 1.00553 1.61885 1.13541 1.14881 1.36602 1.22160 1.00377 0.95477 0.89699 1.21585 0.97336 0.94199 1.02124 1.21574 0.94873 1.01105 0.97845 1.21746 1.01819 0.92781 0.98579 1.21652 0.86940 0.97253 0.96175 0.93245 1.21502 0.94121 1.00670 0.98141 1.21459 0.96842 1.03792 0.92240 1.23968 0.79753 0.75905 0.87985 1.90770 1.50268 1.47583 1.56462 1.84496 1.28461 1.73656 1.46070 0.92456 0.96564 0.96362 0.93373 0.93772 0.90631 0.94990 0.94838 0.92146 0.90599 0.92208 0.91541 0.90254 0.91931 0.88546 0.92533 0.91945 0.84613 0.85373 0.71343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.74 13.96 21.45 0.30 -61.44 16 2 C 0.00 0.22 5.47 84.65 0.46 0.68 16 3 Si 0.95 45.97 27.47 68.60 1.88 47.85 16 4 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 6 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 7 C -0.53 -32.37 9.66 25.60 0.25 -32.12 16 8 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 9 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 10 C -0.09 -3.67 5.05 30.60 0.15 -3.52 16 11 C 0.06 1.99 4.66 86.30 0.40 2.39 16 12 N -0.54 -15.10 4.50 -871.11 -3.92 -19.02 16 13 C 0.05 1.30 5.28 86.32 0.46 1.76 16 14 C -0.11 -2.27 6.09 30.65 0.19 -2.08 16 15 C -0.12 -1.71 6.00 30.67 0.18 -1.53 16 16 C -0.11 -1.69 5.04 30.65 0.15 -1.54 16 17 C 0.09 1.78 1.95 44.94 0.09 1.86 16 18 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 19 C -0.11 -2.25 3.69 30.59 0.11 -2.14 16 20 C -0.11 -1.43 5.57 29.85 0.17 -1.26 16 21 C 0.48 8.87 8.33 71.23 0.59 9.47 16 22 O -0.56 -15.85 16.72 21.98 0.37 -15.49 16 23 O -0.51 -6.40 13.42 -51.45 -0.69 -7.09 16 24 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 25 H 0.02 0.79 7.20 -2.39 -0.02 0.78 16 26 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 27 H 0.05 2.03 6.40 -2.39 -0.02 2.02 16 28 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.08 2.54 5.67 -2.39 -0.01 2.52 16 30 H 0.03 1.02 8.13 -2.39 -0.02 1.00 16 31 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 1.82 6.17 -2.38 -0.01 1.81 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.10 0.87 6.46 -2.39 -0.02 0.86 16 39 H 0.06 1.45 6.03 -2.39 -0.01 1.44 16 40 H 0.06 1.59 8.03 -2.39 -0.02 1.57 16 41 H 0.14 1.10 6.35 -2.39 -0.02 1.09 16 42 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.43 2.29 9.10 -74.06 -0.67 1.62 16 Total: -1.00 -76.66 334.36 1.53 -75.14 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.26 Total: 8.42 kcal Atomic # 6 Polarization: -31.69 SS G_CDS: 3.33 Total: -28.36 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -3.62 Total: -80.46 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.32 Total: -22.58 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.88 Total: 47.85 kcal Total: -76.66 1.53 -75.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050925619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.595 kcal (2) G-P(sol) polarization free energy of solvation -76.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds