Wall clock time and date at job start Mon Mar 30 2020 01:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46906 * 110.99974 * 2 1 4 4 C 1.52998 * 109.46979 * 66.04274 * 3 2 1 5 5 C 1.50705 * 109.47293 * 179.97438 * 4 3 2 6 6 H 1.08003 * 119.99227 * 0.02562 * 5 4 3 7 7 C 1.37867 * 120.00229 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00196 * 0.02562 * 7 5 4 9 9 Si 1.86809 * 119.99965 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46879 * 60.00093 * 9 7 5 11 11 H 1.48498 * 109.47047 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.46949 * 300.00283 * 9 7 5 13 13 C 1.46891 * 111.00489 * 236.04422 * 2 1 3 14 14 C 1.50702 * 109.47229 * 287.84932 * 13 2 1 15 15 C 1.36125 * 120.17473 * 105.42693 * 14 13 2 16 16 C 1.39336 * 120.98635 * 180.02562 * 15 14 13 17 17 C 1.36132 * 120.99397 * 359.91704 * 16 15 14 18 18 C 1.40500 * 119.64829 * 0.05632 * 17 16 15 19 19 C 1.40548 * 121.29693 * 179.97438 * 18 17 16 20 20 C 1.36090 * 119.65893 * 180.02562 * 19 18 17 21 21 C 1.39385 * 120.99281 * 359.95972 * 20 19 18 22 22 C 1.36089 * 120.99086 * 0.04010 * 21 20 19 23 23 C 1.40501 * 120.17284 * 285.45475 * 14 13 2 24 24 H 1.08998 * 109.46802 * 177.86448 * 1 2 3 25 25 H 1.09002 * 109.47189 * 297.86686 * 1 2 3 26 26 H 1.09005 * 109.46773 * 57.86764 * 1 2 3 27 27 H 1.09000 * 109.46993 * 186.04304 * 3 2 1 28 28 H 1.08995 * 109.46949 * 306.04507 * 3 2 1 29 29 H 1.09000 * 109.47283 * 299.99853 * 4 3 2 30 30 H 1.09001 * 109.47461 * 60.00160 * 4 3 2 31 31 H 0.97007 * 119.99617 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.47517 * 167.84809 * 13 2 1 33 33 H 1.09004 * 109.47090 * 47.84630 * 13 2 1 34 34 H 1.07998 * 119.51074 * 0.04502 * 15 14 13 35 35 H 1.07994 * 119.50427 * 179.97438 * 16 15 14 36 36 H 1.07995 * 120.17277 * 180.33166 * 17 16 15 37 37 H 1.08002 * 120.17338 * 0.03205 * 19 18 17 38 38 H 1.07996 * 119.50470 * 179.97438 * 20 19 18 39 39 H 1.07994 * 119.50456 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.17677 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1720 3.4642 1.3185 6 1 2.7201 3.8322 0.4637 7 6 1.9661 4.2817 2.4095 8 7 1.2983 3.8337 3.4502 9 14 2.6356 6.0257 2.4095 10 1 2.0442 6.7829 1.2771 11 1 2.2823 6.6914 3.6890 12 1 4.1128 5.9887 2.2626 13 6 1.9956 -0.7659 -1.1374 14 6 1.7691 -2.2369 -0.9005 15 6 0.7939 -2.8976 -1.5827 16 6 0.5695 -4.2572 -1.3766 17 6 1.3201 -4.9648 -0.4882 18 6 2.3363 -4.3170 0.2341 19 6 3.1315 -5.0137 1.1602 20 6 4.1064 -4.3530 1.8422 21 6 4.3306 -2.9928 1.6361 22 6 3.5805 -2.2857 0.7476 23 6 2.5630 -2.9334 0.0261 24 1 -0.3633 -1.0269 -0.0383 25 1 -0.3634 0.4804 0.9085 26 1 -0.3633 0.5466 -0.8703 27 1 3.0798 1.3444 -0.1082 28 1 1.5612 1.9273 -0.8309 29 1 0.5472 2.0845 1.4264 30 1 2.0657 1.5016 2.1492 31 1 1.1531 4.4090 4.2176 32 1 3.0637 -0.5749 -1.2410 33 1 1.4819 -0.4615 -2.0494 34 1 0.1851 -2.3600 -2.2947 35 1 -0.2110 -4.7575 -1.9305 36 1 1.1383 -6.0193 -0.3427 37 1 2.9698 -6.0680 1.3298 38 1 4.7157 -4.8907 2.5535 39 1 5.1110 -2.4925 2.1901 40 1 3.7658 -1.2323 0.5980 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051993076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:03 Heat of formation + Delta-G solvation = 21.863785 kcal Electronic energy + Delta-G solvation = -19773.659778 eV Core-core repulsion = 16937.901625 eV Total energy + Delta-G solvation = -2835.758154 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.36864 -38.74529 -37.20440 -35.29186 -33.91290 -31.66414 -31.13277 -30.21400 -28.18908 -26.99508 -24.63042 -23.94552 -23.73487 -21.79975 -21.25470 -18.58444 -18.33936 -17.77270 -17.08590 -16.56033 -16.39704 -16.13251 -15.53291 -15.27171 -14.70845 -14.48637 -14.41656 -14.14909 -14.04889 -13.83052 -13.47221 -13.27142 -12.86676 -12.72452 -12.62496 -12.60022 -12.39331 -12.12555 -11.85012 -11.72846 -11.64651 -11.33016 -11.20428 -10.68256 -10.53580 -9.45214 -9.20810 -8.67273 -8.19401 -6.31165 -0.31012 0.17560 1.18971 1.39994 1.43279 1.51182 2.15769 2.40599 3.06063 3.13934 3.39454 3.69667 3.91259 4.05307 4.11779 4.23912 4.26925 4.31007 4.40225 4.43668 4.55185 4.56911 4.64070 4.69405 4.74424 4.77643 4.96935 5.00414 5.09325 5.16357 5.29544 5.38143 5.44301 5.45923 5.57781 5.66440 5.69955 5.78452 5.82946 6.01327 6.09152 6.20057 6.26954 6.32893 6.86093 7.38058 8.92501 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024777 B = 0.004209 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.824108 B = 6650.188532 C = 7342.592166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.546 5.546 3 C 0.080 3.920 4 C 0.039 3.961 5 C -0.545 4.545 6 H 0.061 0.939 7 C 0.002 3.998 8 N -0.932 5.932 9 Si 0.966 3.034 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.093 3.907 14 C -0.073 4.073 15 C -0.119 4.119 16 C -0.118 4.118 17 C -0.112 4.112 18 C -0.074 4.074 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.134 4.134 22 C -0.108 4.108 23 C -0.055 4.055 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.029 0.971 27 H 0.064 0.936 28 H 0.024 0.976 29 H -0.007 1.007 30 H -0.011 1.011 31 H 0.263 0.737 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.134 0.866 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.146 0.854 39 H 0.129 0.871 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.614 -19.132 -9.463 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.270 5.270 3 C -0.047 4.047 4 C 0.001 3.999 5 C -0.583 4.583 6 H 0.079 0.921 7 C -0.196 4.196 8 N -0.572 5.572 9 Si 0.790 3.210 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.191 1.191 13 C -0.034 4.034 14 C -0.074 4.074 15 C -0.138 4.138 16 C -0.136 4.136 17 C -0.130 4.130 18 C -0.074 4.074 19 C -0.133 4.133 20 C -0.139 4.139 21 C -0.152 4.152 22 C -0.126 4.126 23 C -0.055 4.055 24 H 0.093 0.907 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.042 0.958 29 H 0.011 0.989 30 H 0.007 0.993 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.151 0.849 35 H 0.168 0.832 36 H 0.170 0.830 37 H 0.171 0.829 38 H 0.164 0.836 39 H 0.147 0.853 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.716 -19.296 -8.874 21.308 hybrid contribution -0.063 1.707 -0.217 1.722 sum 1.653 -17.589 -9.091 19.868 Atomic orbital electron populations 1.22282 0.87413 1.01433 1.00256 1.61970 1.08342 1.14096 1.42586 1.22020 0.98696 0.86459 0.97564 1.18888 0.94958 0.93621 0.92418 1.21600 1.35410 0.98936 1.02394 0.92096 1.25955 0.95377 1.03230 0.95001 1.70117 1.41973 1.38314 1.06817 0.85498 0.79117 0.78868 0.77533 1.19112 1.20856 1.19111 1.21035 1.00639 0.89752 0.91950 1.19712 0.96499 0.94701 0.96483 1.21002 0.97194 0.95507 1.00097 1.21120 1.00153 0.93730 0.98592 1.21327 0.94661 1.00964 0.96039 1.18450 0.97867 0.92672 0.98423 1.21324 0.95375 1.00855 0.95743 1.21147 0.98594 0.94150 1.00019 1.21134 1.00259 0.95353 0.98478 1.21191 0.95159 0.99670 0.96593 1.18119 0.96645 0.93479 0.97250 0.90744 0.93354 0.95223 0.91798 0.95827 0.98857 0.99260 0.92799 0.90303 0.92873 0.84855 0.83195 0.82954 0.82890 0.83592 0.85321 0.86731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.21 9.13 127.69 1.17 2.38 16 2 N -0.55 -20.43 4.49 -927.03 -4.16 -24.59 16 3 C 0.08 3.44 4.89 86.30 0.42 3.86 16 4 C 0.04 2.11 4.90 29.85 0.15 2.25 16 5 C -0.54 -31.52 9.11 25.60 0.23 -31.29 16 6 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 7 C 0.00 0.14 5.46 84.65 0.46 0.60 16 8 N -0.93 -57.88 13.29 21.44 0.28 -57.59 16 9 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 C 0.09 2.83 4.27 85.56 0.37 3.19 16 14 C -0.07 -2.09 4.68 -19.80 -0.09 -2.18 16 15 C -0.12 -2.78 8.94 22.04 0.20 -2.58 16 16 C -0.12 -2.30 9.95 22.04 0.22 -2.08 16 17 C -0.11 -2.26 9.77 22.33 0.22 -2.04 16 18 C -0.07 -1.89 5.74 -21.30 -0.12 -2.01 16 19 C -0.12 -2.49 9.77 22.33 0.22 -2.27 16 20 C -0.12 -2.72 9.95 22.05 0.22 -2.50 16 21 C -0.13 -3.65 9.95 22.05 0.22 -3.43 16 22 C -0.11 -3.41 9.25 22.33 0.21 -3.20 16 23 C -0.05 -1.65 5.74 -21.30 -0.12 -1.77 16 24 H 0.07 2.33 6.85 -2.39 -0.02 2.31 16 25 H 0.05 1.97 6.57 -2.39 -0.02 1.95 16 26 H 0.03 0.96 8.12 -2.38 -0.02 0.94 16 27 H 0.06 2.67 7.86 -2.39 -0.02 2.65 16 28 H 0.02 0.99 8.11 -2.39 -0.02 0.97 16 29 H -0.01 -0.40 6.60 -2.39 -0.02 -0.42 16 30 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 31 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 32 H 0.08 2.37 6.97 -2.38 -0.02 2.35 16 33 H 0.05 1.44 7.83 -2.38 -0.02 1.43 16 34 H 0.13 2.60 7.96 -2.91 -0.02 2.58 16 35 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 36 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 37 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 38 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.13 3.12 8.06 -2.91 -0.02 3.09 16 40 H 0.11 3.93 6.60 -2.91 -0.02 3.91 16 Total: -1.00 -68.46 328.07 3.12 -65.34 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 1.01 Total: 13.22 kcal Atomic # 6 Polarization: -47.03 SS G_CDS: 3.95 Total: -43.07 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -3.87 Total: -82.18 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -68.46 3.12 -65.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051993076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.205 kcal (2) G-P(sol) polarization free energy of solvation -68.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds