Wall clock time and date at job start Mon Mar 30 2020 01:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47458 * 2 1 4 4 H 1.09002 * 109.46977 * 54.80248 * 3 2 1 5 5 C 1.50698 * 109.47242 * 174.80091 * 3 2 1 6 6 H 1.08001 * 119.99954 * 120.00351 * 5 3 2 7 7 C 1.37871 * 120.00287 * 300.00555 * 5 3 2 8 8 N 1.31511 * 120.00313 * 180.02562 * 7 5 3 9 9 Si 1.86805 * 119.99925 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47103 * 90.00279 * 9 7 5 11 11 H 1.48499 * 109.46883 * 210.00348 * 9 7 5 12 12 H 1.48496 * 109.47143 * 330.00087 * 9 7 5 13 13 N 1.46903 * 109.47014 * 294.80400 * 3 2 1 14 14 C 1.46907 * 110.99732 * 154.26225 * 13 3 2 15 15 C 1.50694 * 109.47092 * 184.55181 * 14 13 3 16 16 C 1.36131 * 120.16917 * 256.76051 * 15 14 13 17 17 C 1.39337 * 120.98643 * 179.97438 * 16 15 14 18 18 C 1.36125 * 120.99168 * 0.06677 * 17 16 15 19 19 C 1.40503 * 119.65254 * 359.95309 * 18 17 16 20 20 C 1.40545 * 121.29459 * 180.02562 * 19 18 17 21 21 C 1.36097 * 119.65349 * 179.97438 * 20 19 18 22 22 C 1.39380 * 120.99434 * 0.02562 * 21 20 19 23 23 C 1.36085 * 120.99472 * 359.97438 * 22 21 20 24 24 C 1.40491 * 120.17790 * 76.77384 * 15 14 13 25 25 H 1.09004 * 109.47600 * 185.29301 * 1 2 3 26 26 H 1.09002 * 109.47219 * 305.29807 * 1 2 3 27 27 H 1.09009 * 109.47184 * 65.28961 * 1 2 3 28 28 H 1.09001 * 109.47144 * 239.99976 * 2 1 3 29 29 H 1.09000 * 109.47286 * 120.00522 * 2 1 3 30 30 H 0.96999 * 120.00504 * 179.97438 * 8 7 5 31 31 H 1.00894 * 110.99870 * 278.21695 * 13 3 2 32 32 H 1.08996 * 109.46835 * 64.54767 * 14 13 3 33 33 H 1.09001 * 109.47055 * 304.55236 * 14 13 3 34 34 H 1.08000 * 119.50512 * 0.02562 * 16 15 14 35 35 H 1.07998 * 119.50523 * 180.02562 * 17 16 15 36 36 H 1.07994 * 120.17254 * 180.22992 * 18 17 16 37 37 H 1.07997 * 120.17226 * 359.94019 * 20 19 18 38 38 H 1.07992 * 119.49925 * 180.02562 * 21 20 19 39 39 H 1.07998 * 119.50271 * 179.97438 * 22 21 20 40 40 H 1.07999 * 120.17782 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6027 1.9825 0.8398 5 6 3.5415 1.4444 0.1287 6 1 4.1493 1.8881 -0.6459 7 6 4.1392 0.8797 1.2354 8 7 5.4495 0.8818 1.3480 9 14 3.0879 0.1128 2.5756 10 1 2.8670 -1.3236 2.2703 11 1 3.7815 0.2402 3.8825 12 1 1.7795 0.8122 2.6394 13 7 1.6555 2.0979 -1.2572 14 6 1.5592 3.5535 -1.0841 15 6 1.0560 4.1788 -2.3595 16 6 1.9191 4.8217 -3.1931 17 6 1.4724 5.4055 -4.3768 18 6 0.1598 5.3511 -4.7334 19 6 -0.7609 4.6964 -3.8981 20 6 -2.1237 4.6192 -4.2328 21 6 -2.9864 3.9763 -3.3993 22 6 -2.5394 3.3920 -2.2154 23 6 -1.2273 3.4468 -1.8587 24 6 -0.3063 4.1017 -2.6943 25 1 -0.3634 -1.0233 0.0948 26 1 -0.3634 0.5938 0.8387 27 1 -0.3634 0.4296 -0.9336 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 5.8701 0.4848 2.1267 31 1 2.2986 1.8636 -1.9985 32 1 2.5432 3.9568 -0.8452 33 1 0.8676 3.7778 -0.2720 34 1 2.9658 4.8794 -2.9335 35 1 2.1780 5.9092 -5.0208 36 1 -0.1714 5.8049 -5.6557 37 1 -2.4846 5.0681 -5.1463 38 1 -4.0330 3.9180 -3.6591 39 1 -3.2451 2.8881 -1.5715 40 1 -0.8955 2.9898 -0.9381 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052061607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:51 Heat of formation + Delta-G solvation = 37.086683 kcal Electronic energy + Delta-G solvation = -20146.967478 eV Core-core repulsion = 17311.869439 eV Total energy + Delta-G solvation = -2835.098039 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.25546 -36.85704 -36.08651 -33.62112 -32.01234 -31.15896 -30.09858 -29.09265 -27.04240 -24.49569 -23.04272 -22.76081 -22.33428 -20.29014 -19.89507 -17.33338 -17.17033 -16.54633 -16.00522 -15.20619 -14.53367 -14.43411 -14.07273 -13.64177 -13.43975 -13.31241 -12.97213 -12.75988 -12.66775 -12.35864 -12.14497 -11.76368 -11.66165 -11.44688 -11.15673 -11.00285 -10.77560 -10.66174 -10.42965 -10.20210 -9.80989 -9.62933 -9.45953 -9.23761 -8.60657 -8.42139 -7.67235 -7.37472 -6.15299 -4.16602 0.73366 1.20921 2.25647 3.18519 3.24219 3.34670 3.36677 4.30247 4.34675 4.75695 4.96544 5.00460 5.09865 5.17275 5.23685 5.31436 5.45498 5.57081 5.61969 5.64449 5.84170 6.00782 6.03828 6.06716 6.19794 6.26094 6.28207 6.39392 6.43882 6.45762 6.62881 6.68308 6.70599 6.72426 6.92513 6.94423 7.06610 7.07816 7.21554 7.25117 7.53132 7.97650 8.33633 8.44824 8.86882 9.48066 10.97611 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024228 B = 0.005360 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.396008 B = 5222.647047 C = 6141.333250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C 0.184 3.816 4 H 0.032 0.968 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.265 1.265 13 N -0.673 5.673 14 C 0.097 3.903 15 C -0.048 4.048 16 C -0.123 4.123 17 C -0.109 4.109 18 C -0.123 4.123 19 C -0.052 4.052 20 C -0.119 4.119 21 C -0.115 4.115 22 C -0.135 4.135 23 C -0.076 4.076 24 C -0.036 4.036 25 H 0.032 0.968 26 H 0.039 0.961 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.264 0.736 31 H 0.337 0.663 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.837 7.208 -9.150 18.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C 0.075 3.925 4 H 0.050 0.950 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.302 5.302 14 C -0.032 4.032 15 C -0.049 4.049 16 C -0.142 4.142 17 C -0.127 4.127 18 C -0.141 4.141 19 C -0.052 4.052 20 C -0.137 4.137 21 C -0.133 4.133 22 C -0.153 4.153 23 C -0.094 4.094 24 C -0.037 4.037 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.154 0.846 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.359 7.047 -8.920 18.314 hybrid contribution 0.667 -0.309 0.787 1.077 sum -13.692 6.738 -8.133 17.292 Atomic orbital electron populations 1.21740 0.97588 0.99209 1.01490 1.21809 0.93813 0.99288 1.00411 1.19604 0.94375 0.90628 0.87936 0.95014 1.21735 0.90519 1.39210 1.07096 0.90945 1.25003 0.94760 0.95249 0.97938 1.69913 1.08989 1.44993 1.29622 0.86815 0.80605 0.79888 0.80677 1.20457 1.22634 1.18943 1.60813 1.55136 1.05098 1.09150 1.20794 0.99611 0.90116 0.92661 1.19975 0.92196 0.95921 0.96760 1.20834 0.99903 0.98865 0.94558 1.20799 0.95741 0.99388 0.96746 1.20904 0.93356 1.00535 0.99280 1.18093 0.93803 0.98616 0.94677 1.20907 0.92373 1.00682 0.99761 1.20791 0.99391 0.98267 0.94895 1.20824 0.96162 1.00985 0.97287 1.21252 0.92446 0.96171 0.99553 1.17946 0.93428 0.98066 0.94226 0.94889 0.94166 0.91977 0.92383 0.93725 0.92618 0.84639 0.93617 0.91006 0.85975 0.86358 0.86184 0.86204 0.86593 0.86399 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.74 37.15 0.36 -2.20 16 2 C -0.12 -2.46 5.11 -26.73 -0.14 -2.60 16 3 C 0.18 4.13 1.56 -68.86 -0.11 4.03 16 4 H 0.03 0.75 6.77 -51.93 -0.35 0.40 16 5 C -0.55 -14.72 9.04 -34.44 -0.31 -15.03 16 6 H 0.07 2.12 7.98 -52.49 -0.42 1.70 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 9 Si 0.89 21.71 24.41 -169.99 -4.15 17.57 16 10 H -0.28 -6.65 6.83 56.52 0.39 -6.26 16 11 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.26 -6.17 6.53 56.52 0.37 -5.80 16 13 N -0.67 -13.04 5.73 -109.22 -0.63 -13.67 16 14 C 0.10 1.73 4.81 -4.98 -0.02 1.70 16 15 C -0.05 -0.77 5.44 -104.53 -0.57 -1.33 16 16 C -0.12 -1.79 9.57 -39.93 -0.38 -2.18 16 17 C -0.11 -1.38 9.95 -39.93 -0.40 -1.78 16 18 C -0.12 -1.53 9.77 -39.49 -0.39 -1.91 16 19 C -0.05 -0.73 5.74 -106.83 -0.61 -1.34 16 20 C -0.12 -1.43 9.77 -39.48 -0.39 -1.82 16 21 C -0.12 -1.34 9.95 -39.93 -0.40 -1.73 16 22 C -0.13 -1.71 9.95 -39.93 -0.40 -2.10 16 23 C -0.08 -1.13 9.30 -39.48 -0.37 -1.49 16 24 C -0.04 -0.56 5.74 -106.83 -0.61 -1.18 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.07 7.91 -51.92 -0.41 0.66 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.04 1.02 3.22 -51.93 -0.17 0.85 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.34 6.77 8.44 -39.29 -0.33 6.44 16 32 H 0.05 0.88 7.90 -51.93 -0.41 0.46 16 33 H 0.07 1.25 6.98 -51.93 -0.36 0.89 16 34 H 0.12 1.71 7.98 -52.49 -0.42 1.29 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.14 2.08 6.65 -52.49 -0.35 1.73 16 LS Contribution 322.28 15.07 4.86 4.86 Total: -1.00 -29.29 322.28 -9.75 -39.05 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.79 Total: 7.44 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: -4.82 Total: -29.00 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.15 Total: -39.91 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.15 Total: 17.57 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.29 -9.75 -39.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052061607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.132 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds