Wall clock time and date at job start Mon Mar 30 2020 01:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47458 * 2 1 4 4 H 1.09002 * 109.46977 * 54.80248 * 3 2 1 5 5 C 1.50698 * 109.47242 * 174.80091 * 3 2 1 6 6 H 1.08001 * 119.99954 * 120.00351 * 5 3 2 7 7 C 1.37871 * 120.00287 * 300.00555 * 5 3 2 8 8 N 1.31511 * 120.00313 * 180.02562 * 7 5 3 9 9 Si 1.86805 * 119.99925 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47103 * 90.00279 * 9 7 5 11 11 H 1.48499 * 109.46883 * 210.00348 * 9 7 5 12 12 H 1.48496 * 109.47143 * 330.00087 * 9 7 5 13 13 N 1.46903 * 109.47014 * 294.80400 * 3 2 1 14 14 C 1.46907 * 110.99732 * 154.26225 * 13 3 2 15 15 C 1.50694 * 109.47092 * 184.55181 * 14 13 3 16 16 C 1.36131 * 120.16917 * 256.76051 * 15 14 13 17 17 C 1.39337 * 120.98643 * 179.97438 * 16 15 14 18 18 C 1.36125 * 120.99168 * 0.06677 * 17 16 15 19 19 C 1.40503 * 119.65254 * 359.95309 * 18 17 16 20 20 C 1.40545 * 121.29459 * 180.02562 * 19 18 17 21 21 C 1.36097 * 119.65349 * 179.97438 * 20 19 18 22 22 C 1.39380 * 120.99434 * 0.02562 * 21 20 19 23 23 C 1.36085 * 120.99472 * 359.97438 * 22 21 20 24 24 C 1.40491 * 120.17790 * 76.77384 * 15 14 13 25 25 H 1.09004 * 109.47600 * 185.29301 * 1 2 3 26 26 H 1.09002 * 109.47219 * 305.29807 * 1 2 3 27 27 H 1.09009 * 109.47184 * 65.28961 * 1 2 3 28 28 H 1.09001 * 109.47144 * 239.99976 * 2 1 3 29 29 H 1.09000 * 109.47286 * 120.00522 * 2 1 3 30 30 H 0.96999 * 120.00504 * 179.97438 * 8 7 5 31 31 H 1.00894 * 110.99870 * 278.21695 * 13 3 2 32 32 H 1.08996 * 109.46835 * 64.54767 * 14 13 3 33 33 H 1.09001 * 109.47055 * 304.55236 * 14 13 3 34 34 H 1.08000 * 119.50512 * 0.02562 * 16 15 14 35 35 H 1.07998 * 119.50523 * 180.02562 * 17 16 15 36 36 H 1.07994 * 120.17254 * 180.22992 * 18 17 16 37 37 H 1.07997 * 120.17226 * 359.94019 * 20 19 18 38 38 H 1.07992 * 119.49925 * 180.02562 * 21 20 19 39 39 H 1.07998 * 119.50271 * 179.97438 * 22 21 20 40 40 H 1.07999 * 120.17782 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6027 1.9825 0.8398 5 6 3.5415 1.4444 0.1287 6 1 4.1493 1.8881 -0.6459 7 6 4.1392 0.8797 1.2354 8 7 5.4495 0.8818 1.3480 9 14 3.0879 0.1128 2.5756 10 1 2.8670 -1.3236 2.2703 11 1 3.7815 0.2402 3.8825 12 1 1.7795 0.8122 2.6394 13 7 1.6555 2.0979 -1.2572 14 6 1.5592 3.5535 -1.0841 15 6 1.0560 4.1788 -2.3595 16 6 1.9191 4.8217 -3.1931 17 6 1.4724 5.4055 -4.3768 18 6 0.1598 5.3511 -4.7334 19 6 -0.7609 4.6964 -3.8981 20 6 -2.1237 4.6192 -4.2328 21 6 -2.9864 3.9763 -3.3993 22 6 -2.5394 3.3920 -2.2154 23 6 -1.2273 3.4468 -1.8587 24 6 -0.3063 4.1017 -2.6943 25 1 -0.3634 -1.0233 0.0948 26 1 -0.3634 0.5938 0.8387 27 1 -0.3634 0.4296 -0.9336 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 5.8701 0.4848 2.1267 31 1 2.2986 1.8636 -1.9985 32 1 2.5432 3.9568 -0.8452 33 1 0.8676 3.7778 -0.2720 34 1 2.9658 4.8794 -2.9335 35 1 2.1780 5.9092 -5.0208 36 1 -0.1714 5.8049 -5.6557 37 1 -2.4846 5.0681 -5.1463 38 1 -4.0330 3.9180 -3.6591 39 1 -3.2451 2.8881 -1.5715 40 1 -0.8955 2.9898 -0.9381 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052061607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:50 Heat of formation + Delta-G solvation = 20.491953 kcal Electronic energy + Delta-G solvation = -20147.687080 eV Core-core repulsion = 17311.869439 eV Total energy + Delta-G solvation = -2835.817641 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.29399 -38.38258 -37.26173 -35.04659 -33.99537 -32.49049 -31.09761 -30.24497 -28.80637 -26.00343 -24.24796 -23.88240 -23.76681 -21.70067 -21.42247 -19.14908 -18.30819 -17.72654 -17.10926 -17.01597 -16.03540 -15.63807 -15.46605 -14.99548 -14.85284 -14.54442 -14.39228 -14.18814 -13.91907 -13.67969 -13.55978 -13.36825 -13.13946 -12.86096 -12.56751 -12.41731 -12.17104 -12.08026 -11.74118 -11.64484 -11.41665 -11.31863 -11.19697 -10.74471 -10.63775 -9.43694 -9.13972 -8.65257 -8.34857 -6.40061 -0.28736 0.19182 1.22044 1.29078 1.33744 1.44386 2.18297 2.28414 3.00784 3.23665 3.60179 3.80359 3.96542 4.08833 4.18234 4.28419 4.32727 4.40433 4.45444 4.49004 4.59051 4.64735 4.69096 4.72936 4.81804 4.93152 5.00566 5.14110 5.18760 5.28564 5.33855 5.40661 5.43756 5.45945 5.48027 5.60742 5.63771 5.72391 5.87271 6.02650 6.07291 6.22596 6.37772 6.57836 6.74595 7.28934 8.81505 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024228 B = 0.005360 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.396008 B = 5222.647047 C = 6141.333250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 C 0.191 3.809 4 H 0.027 0.973 5 C -0.546 4.546 6 H 0.033 0.967 7 C 0.016 3.984 8 N -0.947 5.947 9 Si 0.950 3.050 10 H -0.266 1.266 11 H -0.301 1.301 12 H -0.246 1.246 13 N -0.657 5.657 14 C 0.106 3.894 15 C -0.073 4.073 16 C -0.129 4.129 17 C -0.119 4.119 18 C -0.111 4.111 19 C -0.072 4.072 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.128 4.128 23 C -0.106 4.106 24 C -0.053 4.053 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.033 0.967 30 H 0.265 0.735 31 H 0.331 0.669 32 H 0.020 0.980 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.145 0.855 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.138 0.862 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.382 7.414 -10.467 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.154 4.154 3 C 0.081 3.919 4 H 0.045 0.955 5 C -0.585 4.585 6 H 0.051 0.949 7 C -0.182 4.182 8 N -0.587 5.587 9 Si 0.777 3.223 10 H -0.192 1.192 11 H -0.229 1.229 12 H -0.169 1.169 13 N -0.285 5.285 14 C -0.023 4.023 15 C -0.074 4.074 16 C -0.148 4.148 17 C -0.137 4.137 18 C -0.129 4.129 19 C -0.072 4.072 20 C -0.133 4.133 21 C -0.136 4.136 22 C -0.145 4.145 23 C -0.124 4.124 24 C -0.053 4.053 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.147 0.853 32 H 0.038 0.962 33 H 0.090 0.910 34 H 0.134 0.866 35 H 0.163 0.837 36 H 0.173 0.827 37 H 0.170 0.830 38 H 0.167 0.833 39 H 0.155 0.845 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.929 7.261 -10.254 21.893 hybrid contribution 1.757 -0.277 1.067 2.075 sum -16.172 6.984 -9.187 19.867 Atomic orbital electron populations 1.21636 0.94474 1.00855 1.02045 1.21739 0.96555 0.97489 0.99598 1.19467 0.91211 0.92119 0.89121 0.95547 1.22061 0.92855 1.37796 1.05778 0.94922 1.25852 0.95804 0.96011 1.00515 1.70060 1.11021 1.46892 1.30719 0.85827 0.79534 0.79647 0.77275 1.19190 1.22880 1.16938 1.60827 1.54006 1.06216 1.07452 1.20676 0.98234 0.88960 0.94411 1.19771 0.93266 0.97902 0.96449 1.20972 0.99540 0.98873 0.95421 1.21049 0.96813 0.99592 0.96242 1.21323 0.92786 0.98921 0.99837 1.18438 0.95359 0.99023 0.94414 1.21302 0.91324 0.99912 1.00785 1.21179 1.01067 0.97311 0.94062 1.21142 0.95519 0.99989 0.97892 1.21212 0.93597 0.97948 0.99603 1.18091 0.93000 0.98828 0.95365 0.92619 0.93676 0.91442 0.92913 0.94850 0.92578 0.85332 0.96217 0.91017 0.86636 0.83727 0.82738 0.83021 0.83319 0.84454 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 9.74 71.98 0.70 -3.76 16 2 C -0.12 -4.85 5.11 30.59 0.16 -4.70 16 3 C 0.19 8.73 1.56 44.17 0.07 8.80 16 4 H 0.03 1.25 6.77 -2.39 -0.02 1.24 16 5 C -0.55 -30.68 9.04 25.60 0.23 -30.45 16 6 H 0.03 2.04 7.98 -2.91 -0.02 2.02 16 7 C 0.02 0.95 5.45 84.65 0.46 1.41 16 8 N -0.95 -59.25 13.96 21.44 0.30 -58.95 16 9 Si 0.95 45.09 24.41 68.60 1.67 46.77 16 10 H -0.27 -12.05 6.83 99.48 0.68 -11.38 16 11 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 12 H -0.25 -10.80 6.53 99.48 0.65 -10.15 16 13 N -0.66 -26.34 5.73 -499.45 -2.86 -29.20 16 14 C 0.11 3.98 4.81 85.55 0.41 4.40 16 15 C -0.07 -2.41 5.44 -19.81 -0.11 -2.52 16 16 C -0.13 -3.86 9.57 22.04 0.21 -3.65 16 17 C -0.12 -2.85 9.95 22.04 0.22 -2.63 16 18 C -0.11 -2.45 9.77 22.33 0.22 -2.23 16 19 C -0.07 -1.86 5.74 -21.30 -0.12 -1.98 16 20 C -0.12 -2.33 9.77 22.33 0.22 -2.11 16 21 C -0.12 -2.28 9.95 22.05 0.22 -2.07 16 22 C -0.13 -2.92 9.95 22.04 0.22 -2.70 16 23 C -0.11 -3.04 9.30 22.33 0.21 -2.83 16 24 C -0.05 -1.60 5.74 -21.30 -0.12 -1.72 16 25 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.07 2.19 7.91 -2.38 -0.02 2.17 16 28 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.03 1.47 3.22 -2.39 -0.01 1.47 16 30 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 31 H 0.33 13.98 8.44 -89.70 -0.76 13.22 16 32 H 0.02 0.82 7.90 -2.39 -0.02 0.80 16 33 H 0.07 2.63 6.98 -2.39 -0.02 2.61 16 34 H 0.12 3.46 7.98 -2.91 -0.02 3.43 16 35 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 36 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 37 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 39 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 40 H 0.12 3.72 6.65 -2.91 -0.02 3.70 16 Total: -1.00 -65.77 322.28 2.49 -63.28 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.19 Total: 26.85 kcal Atomic # 6 Polarization: -51.93 SS G_CDS: 3.19 Total: -48.74 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -2.56 Total: -88.15 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.67 Total: 46.77 kcal Total: -65.77 2.49 -63.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052061607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.771 kcal (2) G-P(sol) polarization free energy of solvation -65.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds