Wall clock time and date at job start Mon Mar 30 2020 01:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.50704 * 109.46778 * 119.99823 * 2 1 3 5 5 C 1.39373 * 119.50230 * 80.00371 * 4 2 1 6 6 C 1.36095 * 120.98824 * 180.02562 * 5 4 2 7 7 C 1.40546 * 119.65123 * 359.97438 * 6 5 4 8 8 C 1.40538 * 121.28199 * 180.02562 * 7 6 5 9 9 C 1.36099 * 119.65138 * 179.97438 * 8 7 6 10 10 C 1.39379 * 120.98759 * 0.02562 * 9 8 7 11 11 C 1.36085 * 120.98780 * 359.97438 * 10 9 8 12 12 C 1.40537 * 119.65749 * 0.02562 * 11 10 9 13 13 C 1.36086 * 119.50469 * 260.01979 * 4 2 1 14 14 N 1.46901 * 109.47048 * 239.99813 * 2 1 3 15 15 C 1.46908 * 110.99841 * 183.95478 * 14 2 1 16 16 C 1.46898 * 110.99915 * 60.00681 * 14 2 1 17 17 C 1.50707 * 109.46995 * 189.99998 * 16 14 2 18 18 H 1.08002 * 119.99617 * 359.97438 * 17 16 14 19 19 C 1.37870 * 120.00004 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00365 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00097 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47181 * 89.99809 * 21 19 17 23 23 H 1.48500 * 109.47464 * 210.00119 * 21 19 17 24 24 H 1.48503 * 109.47022 * 330.00171 * 21 19 17 25 25 H 1.08996 * 109.47407 * 300.00013 * 1 2 3 26 26 H 1.09000 * 109.46950 * 60.00410 * 1 2 3 27 27 H 1.08999 * 109.47147 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.51069 * 0.04519 * 5 4 2 29 29 H 1.07998 * 120.17687 * 179.72646 * 6 5 4 30 30 H 1.07997 * 120.17515 * 0.02562 * 8 7 6 31 31 H 1.08000 * 119.50464 * 180.02562 * 9 8 7 32 32 H 1.07995 * 119.49947 * 179.97438 * 10 9 8 33 33 H 1.08001 * 120.17314 * 180.02562 * 11 10 9 34 34 H 1.07996 * 120.17534 * 0.02562 * 13 4 2 35 35 H 1.08996 * 109.46866 * 59.99822 * 15 14 2 36 36 H 1.08996 * 109.47187 * 179.97438 * 15 14 2 37 37 H 1.09001 * 109.46699 * 300.00218 * 15 14 2 38 38 H 1.09003 * 109.47079 * 309.99159 * 16 14 2 39 39 H 1.08999 * 109.47798 * 69.99554 * 16 14 2 40 40 H 0.96995 * 120.00671 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 2.0625 -2.1036 1.2545 6 6 2.5096 -2.7760 2.3499 7 6 2.9487 -2.0578 3.4754 8 6 3.4177 -2.7172 4.6245 9 6 3.8354 -1.9887 5.6955 10 6 3.8052 -0.5954 5.6715 11 6 3.3575 0.0769 4.5763 12 6 2.9179 -0.6412 3.4510 13 6 2.4491 0.0181 2.3017 14 7 2.0196 -0.6925 -1.1994 15 6 3.4851 -0.7946 -1.1870 16 6 1.5487 -0.0264 -2.4210 17 6 1.8580 -0.8912 -3.6159 18 1 2.3551 -1.8405 -3.4812 19 6 1.5064 -0.4705 -4.8809 20 7 1.7767 -1.2248 -5.9237 21 14 0.6461 1.1712 -5.1138 22 1 1.6601 2.2380 -5.3105 23 1 -0.2376 1.1024 -6.3052 24 1 -0.1683 1.4783 -3.9105 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.7263 -2.6579 0.3907 29 1 2.5232 -3.8559 2.3559 30 1 3.4472 -3.7962 4.6572 31 1 4.1957 -2.4978 6.5772 32 1 4.1420 -0.0412 6.5350 33 1 3.3402 1.1568 4.5718 34 1 2.4194 1.0971 2.2691 35 1 3.8029 -1.3531 -0.3066 36 1 3.8210 -1.3117 -2.0858 37 1 3.9186 0.2051 -1.1591 38 1 0.4723 0.1324 -2.3564 39 1 2.0519 0.9346 -2.5280 40 1 1.5291 -0.9291 -6.8136 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053643181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:53 Heat of formation + Delta-G solvation = 48.207076 kcal Electronic energy + Delta-G solvation = -19881.137863 eV Core-core repulsion = 17046.522040 eV Total energy + Delta-G solvation = -2834.615823 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.40425 -38.03440 -35.69691 -32.94365 -32.47533 -31.14743 -29.66061 -28.78177 -27.78882 -24.43628 -23.75644 -23.16371 -21.90791 -21.34537 -19.55062 -17.24375 -17.02249 -16.59031 -16.03972 -14.87014 -14.73316 -14.51447 -14.15889 -13.96974 -13.64583 -13.37818 -13.30078 -12.85381 -12.80757 -12.43189 -12.03344 -11.82817 -11.69772 -11.51502 -11.18887 -10.92206 -10.87031 -10.75854 -10.71240 -10.57292 -9.97115 -9.91425 -9.81691 -9.26253 -8.57673 -8.37184 -7.81330 -7.41759 -6.05677 -4.02623 0.60277 1.09074 2.12642 3.06765 3.27204 3.35152 3.36201 4.18644 4.41097 4.56657 4.74120 4.82134 4.88986 5.02230 5.14247 5.21611 5.27228 5.40788 5.45184 5.61302 5.68932 5.69618 5.80817 5.95254 6.01605 6.09836 6.18504 6.24158 6.28791 6.33988 6.36651 6.46355 6.57121 6.68716 6.71213 6.84513 6.87590 6.88269 6.99787 7.12710 7.60415 7.89498 8.03425 8.65159 9.02946 9.56068 11.07498 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039927 B = 0.004002 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.115000 B = 6994.300051 C = 7277.378749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.110 3.890 3 H 0.039 0.961 4 C -0.052 4.052 5 C -0.078 4.078 6 C -0.120 4.120 7 C -0.054 4.054 8 C -0.105 4.105 9 C -0.126 4.126 10 C -0.125 4.125 11 C -0.106 4.106 12 C -0.050 4.050 13 C -0.117 4.117 14 N -0.522 5.522 15 C 0.034 3.966 16 C 0.158 3.842 17 C -0.507 4.507 18 H 0.081 0.919 19 C 0.068 3.932 20 N -0.901 5.901 21 Si 0.874 3.126 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.267 1.267 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.138 0.862 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.010 0.990 38 H 0.036 0.964 39 H -0.017 1.017 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.820 1.088 21.521 21.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.002 3.998 3 H 0.056 0.944 4 C -0.053 4.053 5 C -0.097 4.097 6 C -0.138 4.138 7 C -0.054 4.054 8 C -0.123 4.123 9 C -0.144 4.144 10 C -0.143 4.143 11 C -0.124 4.124 12 C -0.050 4.050 13 C -0.135 4.135 14 N -0.246 5.246 15 C -0.114 4.114 16 C 0.031 3.969 17 C -0.546 4.546 18 H 0.099 0.901 19 C -0.133 4.133 20 N -0.540 5.540 21 Si 0.702 3.298 22 H -0.204 1.204 23 H -0.212 1.212 24 H -0.192 1.192 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.156 0.844 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.028 0.972 38 H 0.054 0.946 39 H 0.000 1.000 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.600 0.608 21.306 21.375 hybrid contribution -0.033 1.749 -0.301 1.775 sum 1.567 2.357 21.005 21.195 Atomic orbital electron populations 1.21863 0.93734 1.02862 1.01308 1.20633 0.95734 0.94520 0.88955 0.94366 1.19693 0.96582 0.94132 0.94844 1.20947 0.96747 0.93916 0.98043 1.21044 1.00271 0.99591 0.92882 1.18117 0.99859 0.92655 0.94810 1.21022 0.98781 0.99621 0.92854 1.20776 1.00917 0.94145 0.98599 1.20767 1.00735 0.94465 0.98343 1.21002 0.98946 0.99531 0.92901 1.18022 0.99746 0.92662 0.94543 1.20855 1.00455 0.99463 0.92734 1.62042 1.09878 1.51455 1.01208 1.22290 0.87972 0.99003 1.02146 1.20289 0.95822 0.92853 0.87887 1.21025 1.38692 1.06091 0.88744 0.90111 1.24888 0.95615 0.96889 0.95936 1.69887 1.47849 1.37579 0.98669 0.86880 0.80161 0.84825 0.77975 1.20407 1.21157 1.19182 0.93048 0.91609 0.91580 0.84374 0.85724 0.85860 0.86410 0.86416 0.85943 0.86016 0.93044 0.90105 0.97170 0.94645 0.99981 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.96 37.16 0.33 -1.90 16 2 C 0.11 1.88 2.25 -68.86 -0.16 1.73 16 3 H 0.04 0.65 7.95 -51.93 -0.41 0.24 16 4 C -0.05 -0.80 3.74 -104.97 -0.39 -1.19 16 5 C -0.08 -1.17 7.95 -39.93 -0.32 -1.49 16 6 C -0.12 -1.59 9.77 -39.48 -0.39 -1.97 16 7 C -0.05 -0.72 5.74 -106.83 -0.61 -1.33 16 8 C -0.10 -1.16 9.77 -39.48 -0.39 -1.54 16 9 C -0.13 -1.26 9.95 -39.93 -0.40 -1.65 16 10 C -0.13 -1.25 9.95 -39.93 -0.40 -1.65 16 11 C -0.11 -1.19 9.77 -39.49 -0.39 -1.58 16 12 C -0.05 -0.66 5.74 -106.83 -0.61 -1.28 16 13 C -0.12 -1.62 9.36 -39.48 -0.37 -1.99 16 14 N -0.52 -10.66 3.92 -237.72 -0.93 -11.59 16 15 C 0.03 0.67 8.94 60.07 0.54 1.21 16 16 C 0.16 3.75 3.60 -4.97 -0.02 3.73 16 17 C -0.51 -14.22 9.01 -34.44 -0.31 -14.53 16 18 H 0.08 2.46 7.37 -52.49 -0.39 2.08 16 19 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 20 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 21 Si 0.87 21.35 27.47 -169.99 -4.67 16.68 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.12 6.20 -51.93 -0.32 0.80 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.14 2.21 7.67 -52.49 -0.40 1.80 16 29 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 32 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.12 1.49 8.00 -52.49 -0.42 1.07 16 35 H 0.05 0.91 6.11 -51.93 -0.32 0.59 16 36 H 0.08 1.74 6.76 -51.93 -0.35 1.39 16 37 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.04 0.85 4.88 -51.93 -0.25 0.59 16 39 H -0.02 -0.42 7.55 -51.93 -0.39 -0.82 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 321.60 15.07 4.85 4.85 Total: -1.00 -30.42 321.60 -9.76 -40.18 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.81 Total: 0.14 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -3.97 Total: -23.58 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: -0.16 Total: -38.27 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.42 -9.76 -40.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053643181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.385 kcal (2) G-P(sol) polarization free energy of solvation -30.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds