Wall clock time and date at job start Mon Mar 30 2020 01:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.50704 * 109.46778 * 119.99823 * 2 1 3 5 5 C 1.39373 * 119.50230 * 80.00371 * 4 2 1 6 6 C 1.36095 * 120.98824 * 180.02562 * 5 4 2 7 7 C 1.40546 * 119.65123 * 359.97438 * 6 5 4 8 8 C 1.40538 * 121.28199 * 180.02562 * 7 6 5 9 9 C 1.36099 * 119.65138 * 179.97438 * 8 7 6 10 10 C 1.39379 * 120.98759 * 0.02562 * 9 8 7 11 11 C 1.36085 * 120.98780 * 359.97438 * 10 9 8 12 12 C 1.40537 * 119.65749 * 0.02562 * 11 10 9 13 13 C 1.36086 * 119.50469 * 260.01979 * 4 2 1 14 14 N 1.46901 * 109.47048 * 239.99813 * 2 1 3 15 15 C 1.46908 * 110.99841 * 183.95478 * 14 2 1 16 16 C 1.46898 * 110.99915 * 60.00681 * 14 2 1 17 17 C 1.50707 * 109.46995 * 189.99998 * 16 14 2 18 18 H 1.08002 * 119.99617 * 359.97438 * 17 16 14 19 19 C 1.37870 * 120.00004 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00365 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00097 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47181 * 89.99809 * 21 19 17 23 23 H 1.48500 * 109.47464 * 210.00119 * 21 19 17 24 24 H 1.48503 * 109.47022 * 330.00171 * 21 19 17 25 25 H 1.08996 * 109.47407 * 300.00013 * 1 2 3 26 26 H 1.09000 * 109.46950 * 60.00410 * 1 2 3 27 27 H 1.08999 * 109.47147 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.51069 * 0.04519 * 5 4 2 29 29 H 1.07998 * 120.17687 * 179.72646 * 6 5 4 30 30 H 1.07997 * 120.17515 * 0.02562 * 8 7 6 31 31 H 1.08000 * 119.50464 * 180.02562 * 9 8 7 32 32 H 1.07995 * 119.49947 * 179.97438 * 10 9 8 33 33 H 1.08001 * 120.17314 * 180.02562 * 11 10 9 34 34 H 1.07996 * 120.17534 * 0.02562 * 13 4 2 35 35 H 1.08996 * 109.46866 * 59.99822 * 15 14 2 36 36 H 1.08996 * 109.47187 * 179.97438 * 15 14 2 37 37 H 1.09001 * 109.46699 * 300.00218 * 15 14 2 38 38 H 1.09003 * 109.47079 * 309.99159 * 16 14 2 39 39 H 1.08999 * 109.47798 * 69.99554 * 16 14 2 40 40 H 0.96995 * 120.00671 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 2.0625 -2.1036 1.2545 6 6 2.5096 -2.7760 2.3499 7 6 2.9487 -2.0578 3.4754 8 6 3.4177 -2.7172 4.6245 9 6 3.8354 -1.9887 5.6955 10 6 3.8052 -0.5954 5.6715 11 6 3.3575 0.0769 4.5763 12 6 2.9179 -0.6412 3.4510 13 6 2.4491 0.0181 2.3017 14 7 2.0196 -0.6925 -1.1994 15 6 3.4851 -0.7946 -1.1870 16 6 1.5487 -0.0264 -2.4210 17 6 1.8580 -0.8912 -3.6159 18 1 2.3551 -1.8405 -3.4812 19 6 1.5064 -0.4705 -4.8809 20 7 1.7767 -1.2248 -5.9237 21 14 0.6461 1.1712 -5.1138 22 1 1.6601 2.2380 -5.3105 23 1 -0.2376 1.1024 -6.3052 24 1 -0.1683 1.4783 -3.9105 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.7263 -2.6579 0.3907 29 1 2.5232 -3.8559 2.3559 30 1 3.4472 -3.7962 4.6572 31 1 4.1957 -2.4978 6.5772 32 1 4.1420 -0.0412 6.5350 33 1 3.3402 1.1568 4.5718 34 1 2.4194 1.0971 2.2691 35 1 3.8029 -1.3531 -0.3066 36 1 3.8210 -1.3117 -2.0858 37 1 3.9186 0.2051 -1.1591 38 1 0.4723 0.1324 -2.3564 39 1 2.0519 0.9346 -2.5280 40 1 1.5291 -0.9291 -6.8136 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053643181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:53 Heat of formation + Delta-G solvation = 31.726108 kcal Electronic energy + Delta-G solvation = -19881.852532 eV Core-core repulsion = 17046.522040 eV Total energy + Delta-G solvation = -2835.330491 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.38972 -39.32534 -36.90630 -34.74339 -33.70771 -32.50577 -30.71113 -30.01260 -29.46968 -26.11808 -25.01604 -24.12967 -22.98126 -22.71807 -21.00745 -19.07700 -18.10090 -17.66117 -17.24626 -16.35635 -16.28553 -15.75110 -15.59030 -15.22324 -14.86728 -14.50820 -14.44575 -14.27584 -14.14080 -13.78604 -13.47063 -13.11759 -13.08943 -12.92691 -12.60118 -12.56275 -12.21896 -12.12150 -11.94428 -11.75515 -11.64702 -11.42482 -11.36040 -10.82319 -10.76877 -9.36315 -9.05587 -8.74316 -8.27435 -6.30188 -0.31617 0.13645 1.18783 1.34424 1.36036 1.46816 2.12709 2.34705 3.05030 3.15880 3.27278 3.67695 3.81178 4.04757 4.12593 4.17704 4.32854 4.37756 4.39652 4.43348 4.54083 4.56704 4.62463 4.67927 4.84228 4.86297 4.93945 5.00114 5.05377 5.08518 5.15301 5.26626 5.27691 5.37789 5.43486 5.57030 5.62561 5.73257 5.75121 5.97669 6.02022 6.17659 6.35292 6.66162 6.75839 7.32970 8.89271 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039927 B = 0.004002 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.115000 B = 6994.300051 C = 7277.378749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.112 3.888 3 H 0.043 0.957 4 C -0.069 4.069 5 C -0.100 4.100 6 C -0.116 4.116 7 C -0.071 4.071 8 C -0.117 4.117 9 C -0.122 4.122 10 C -0.121 4.121 11 C -0.118 4.118 12 C -0.067 4.067 13 C -0.113 4.113 14 N -0.533 5.533 15 C 0.045 3.955 16 C 0.168 3.832 17 C -0.514 4.514 18 H 0.038 0.962 19 C 0.008 3.992 20 N -0.949 5.949 21 Si 0.945 3.055 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.246 1.246 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.117 0.883 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.015 0.985 38 H 0.042 0.958 39 H -0.018 1.018 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.750 2.717 24.810 25.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.004 3.996 3 H 0.060 0.940 4 C -0.069 4.069 5 C -0.118 4.118 6 C -0.134 4.134 7 C -0.071 4.071 8 C -0.134 4.134 9 C -0.140 4.140 10 C -0.139 4.139 11 C -0.136 4.136 12 C -0.067 4.067 13 C -0.131 4.131 14 N -0.257 5.257 15 C -0.104 4.104 16 C 0.041 3.959 17 C -0.552 4.552 18 H 0.056 0.944 19 C -0.189 4.189 20 N -0.590 5.590 21 Si 0.768 3.232 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.170 1.170 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.135 0.865 29 H 0.159 0.841 30 H 0.160 0.840 31 H 0.165 0.835 32 H 0.165 0.835 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.060 0.940 39 H 0.000 1.000 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.533 2.233 24.625 24.774 hybrid contribution 0.097 1.127 -1.125 1.596 sum 1.629 3.361 23.500 23.795 Atomic orbital electron populations 1.21837 0.92995 1.02554 1.01982 1.20676 0.96389 0.94500 0.88027 0.93952 1.19492 0.98627 0.94150 0.94662 1.20798 0.98741 0.94019 0.98235 1.21234 0.99213 1.00503 0.92436 1.18385 1.00285 0.92996 0.95479 1.21299 0.98811 1.00865 0.92470 1.21208 0.99301 0.94396 0.99075 1.21197 0.99109 0.94826 0.98747 1.21269 0.99053 1.00637 0.92594 1.18276 1.00227 0.93061 0.95151 1.21010 0.99541 1.00151 0.92426 1.61912 1.10245 1.52087 1.01466 1.22144 0.87755 0.99066 1.01410 1.20042 0.96119 0.91900 0.87821 1.21260 1.37946 1.05141 0.90843 0.94397 1.25824 0.96483 1.01190 0.95435 1.70046 1.49576 1.40029 0.99352 0.85751 0.79244 0.79495 0.78692 1.19512 1.20685 1.16964 0.90343 0.92797 0.92401 0.86482 0.84068 0.83976 0.83466 0.83484 0.84114 0.84555 0.91239 0.93199 0.96676 0.94027 1.00003 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 8.96 71.98 0.65 -3.58 16 2 C 0.11 3.78 2.25 44.17 0.10 3.88 16 3 H 0.04 1.39 7.95 -2.39 -0.02 1.38 16 4 C -0.07 -2.07 3.74 -20.09 -0.08 -2.15 16 5 C -0.10 -3.02 7.95 22.04 0.18 -2.85 16 6 C -0.12 -3.01 9.77 22.33 0.22 -2.79 16 7 C -0.07 -1.76 5.74 -21.30 -0.12 -1.89 16 8 C -0.12 -2.25 9.77 22.33 0.22 -2.03 16 9 C -0.12 -1.95 9.95 22.05 0.22 -1.73 16 10 C -0.12 -1.94 9.95 22.04 0.22 -1.72 16 11 C -0.12 -2.29 9.77 22.33 0.22 -2.07 16 12 C -0.07 -1.66 5.74 -21.30 -0.12 -1.79 16 13 C -0.11 -2.96 9.36 22.33 0.21 -2.75 16 14 N -0.53 -22.24 3.92 -906.01 -3.55 -25.79 16 15 C 0.04 1.79 8.94 127.69 1.14 2.94 16 16 C 0.17 8.08 3.60 85.56 0.31 8.39 16 17 C -0.51 -29.92 9.01 25.60 0.23 -29.68 16 18 H 0.04 2.47 7.37 -2.91 -0.02 2.45 16 19 C 0.01 0.45 5.47 84.65 0.46 0.92 16 20 N -0.95 -59.81 13.96 21.44 0.30 -59.51 16 21 Si 0.94 44.14 27.47 68.60 1.88 46.02 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.25 -10.58 6.54 99.48 0.65 -9.93 16 25 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.05 1.77 6.20 -2.39 -0.01 1.76 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.12 3.96 7.67 -2.91 -0.02 3.94 16 29 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 30 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 31 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 33 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 34 H 0.14 3.04 8.00 -2.91 -0.02 3.02 16 35 H 0.07 2.52 6.11 -2.39 -0.01 2.50 16 36 H 0.05 2.28 6.76 -2.39 -0.02 2.26 16 37 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.04 1.96 4.88 -2.39 -0.01 1.95 16 39 H -0.02 -0.85 7.55 -2.39 -0.02 -0.86 16 40 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -67.75 321.60 3.63 -64.11 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.96 Total: 14.09 kcal Atomic # 6 Polarization: -42.97 SS G_CDS: 4.05 Total: -38.92 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -3.25 Total: -85.31 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.02 kcal Total: -67.75 3.63 -64.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053643181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.837 kcal (2) G-P(sol) polarization free energy of solvation -67.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds