Wall clock time and date at job start Mon Mar 30 2020 01:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47387 * 2 1 4 4 H 1.08998 * 109.46859 * 174.08913 * 3 2 1 5 5 C 1.50698 * 109.46726 * 54.08958 * 3 2 1 6 6 H 1.08002 * 119.99804 * 239.99592 * 5 3 2 7 7 C 1.37869 * 120.00326 * 60.00264 * 5 3 2 8 8 N 1.31515 * 120.00375 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00135 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47574 * 89.99619 * 9 7 5 11 11 H 1.48508 * 109.46902 * 209.99897 * 9 7 5 12 12 H 1.48502 * 109.47009 * 329.99474 * 9 7 5 13 13 N 1.46898 * 109.47238 * 294.08642 * 3 2 1 14 14 C 1.46895 * 111.00065 * 275.74533 * 13 3 2 15 15 C 1.50706 * 109.47003 * 176.26095 * 14 13 3 16 16 C 1.39379 * 119.50025 * 269.72332 * 15 14 13 17 17 C 1.36099 * 120.98252 * 179.73059 * 16 15 14 18 18 C 1.40535 * 119.65552 * 0.55873 * 17 16 15 19 19 C 1.40538 * 121.28288 * 179.72200 * 18 17 16 20 20 C 1.36092 * 119.65351 * 180.02562 * 19 18 17 21 21 C 1.39371 * 120.98911 * 359.95514 * 20 19 18 22 22 C 1.36093 * 120.98916 * 0.02622 * 21 20 19 23 23 C 1.40535 * 119.65566 * 359.97438 * 22 21 20 24 24 C 1.36085 * 119.50783 * 89.99753 * 15 14 13 25 25 H 1.09002 * 109.46915 * 298.55914 * 1 2 3 26 26 H 1.09002 * 109.47506 * 178.55479 * 1 2 3 27 27 H 1.09010 * 109.46941 * 58.55547 * 1 2 3 28 28 H 1.09002 * 109.46832 * 120.00031 * 2 1 3 29 29 H 1.09001 * 109.46913 * 239.99848 * 2 1 3 30 30 H 0.96993 * 120.00543 * 179.97438 * 8 7 5 31 31 H 1.00905 * 110.99574 * 39.69857 * 13 3 2 32 32 H 1.09005 * 109.47061 * 296.25366 * 14 13 3 33 33 H 1.08997 * 109.47274 * 56.25881 * 14 13 3 34 34 H 1.08001 * 119.50751 * 359.97438 * 16 15 14 35 35 H 1.08005 * 120.16937 * 180.28098 * 17 16 15 36 36 H 1.07998 * 120.16807 * 0.02763 * 19 18 17 37 37 H 1.08007 * 119.50300 * 179.97438 * 20 19 18 38 38 H 1.07997 * 119.50386 * 180.02562 * 21 20 19 39 39 H 1.08004 * 120.16962 * 179.97438 * 22 21 20 40 40 H 1.08003 * 120.17347 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1249 1.4442 0.1058 5 6 1.4218 2.1938 1.1508 6 1 0.8150 3.0670 0.9618 7 6 1.6309 1.7666 2.4448 8 7 2.3695 0.7031 2.6751 9 14 0.8651 2.6984 3.8713 10 1 -0.4773 2.1361 4.1663 11 1 1.7313 2.5669 5.0704 12 1 0.7327 4.1330 3.5113 13 7 1.6704 2.0926 -1.2644 14 6 2.6516 1.7945 -2.3161 15 6 2.1926 2.4002 -3.6176 16 6 1.3927 1.6512 -4.4788 17 6 0.9567 2.1702 -5.6590 18 6 1.3263 3.4763 -6.0231 19 6 0.9004 4.0439 -7.2361 20 6 1.2786 5.3115 -7.5558 21 6 2.0829 6.0586 -6.6970 22 6 2.5139 5.5419 -5.5141 23 6 2.1439 4.2360 -5.1496 24 6 2.5701 3.6681 -3.9368 25 1 -0.3633 0.4913 0.9026 26 1 -0.3634 -1.0273 -0.0259 27 1 -0.3633 0.5362 -0.8768 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 2.5170 0.4028 3.5855 31 1 0.7407 1.8243 -1.5506 32 1 3.6187 2.2153 -2.0407 33 1 2.7446 0.7146 -2.4308 34 1 1.1114 0.6454 -4.2037 35 1 0.3335 1.5797 -6.3144 36 1 0.2763 3.4771 -7.9110 37 1 0.9502 5.7452 -8.4889 38 1 2.3684 7.0625 -6.9745 39 1 3.1372 6.1324 -4.8588 40 1 3.1936 4.2351 -3.2614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:49 Heat of formation + Delta-G solvation = 32.297468 kcal Electronic energy + Delta-G solvation = -19568.752314 eV Core-core repulsion = 16733.446599 eV Total energy + Delta-G solvation = -2835.305715 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.26944 -37.30312 -35.88630 -33.04860 -32.35307 -31.05501 -29.71326 -29.00273 -26.51370 -24.49500 -23.23434 -23.15632 -21.84535 -21.43027 -19.27987 -17.28097 -16.81795 -16.38962 -15.66242 -14.81862 -14.69668 -14.45547 -14.22307 -13.70726 -13.39040 -13.35800 -13.15860 -12.79136 -12.53597 -12.24331 -12.11217 -11.76338 -11.43034 -11.13169 -10.97634 -10.85120 -10.72879 -10.56063 -10.50896 -9.97713 -9.90029 -9.76485 -9.54949 -8.97279 -8.43726 -8.34028 -7.77248 -7.20363 -5.96697 -3.98158 0.63498 1.09775 2.16623 3.07547 3.33145 3.40037 3.44853 4.21068 4.46257 4.65099 4.85874 4.92238 5.02140 5.13351 5.30737 5.35074 5.38760 5.48730 5.53187 5.62732 5.82937 5.96005 6.04194 6.16106 6.23639 6.33205 6.35098 6.37706 6.38613 6.48662 6.57073 6.65665 6.89060 6.91172 6.91829 7.12760 7.27246 7.28866 7.50681 7.70097 7.89877 8.28327 8.54253 8.62458 9.07640 9.65548 11.10403 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028582 B = 0.003896 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.417876 B = 7184.821563 C = 7696.523719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.214 3.786 4 H 0.033 0.967 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.677 5.677 14 C 0.092 3.908 15 C -0.065 4.065 16 C -0.103 4.103 17 C -0.115 4.115 18 C -0.056 4.056 19 C -0.107 4.107 20 C -0.125 4.125 21 C -0.125 4.125 22 C -0.102 4.102 23 C -0.050 4.050 24 C -0.089 4.089 25 H 0.066 0.934 26 H 0.022 0.978 27 H 0.029 0.971 28 H 0.092 0.908 29 H 0.010 0.990 30 H 0.259 0.741 31 H 0.327 0.673 32 H 0.073 0.927 33 H 0.029 0.971 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.041 4.462 -17.909 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.527 4.527 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.308 5.308 14 C -0.037 4.037 15 C -0.066 4.066 16 C -0.121 4.121 17 C -0.133 4.133 18 C -0.056 4.056 19 C -0.125 4.125 20 C -0.143 4.143 21 C -0.143 4.143 22 C -0.120 4.120 23 C -0.050 4.050 24 C -0.108 4.108 25 H 0.085 0.915 26 H 0.041 0.959 27 H 0.048 0.952 28 H 0.111 0.889 29 H 0.029 0.971 30 H 0.069 0.931 31 H 0.146 0.854 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.669 4.958 -17.562 18.261 hybrid contribution -0.653 -0.568 0.648 1.081 sum -1.322 4.390 -16.914 17.525 Atomic orbital electron populations 1.21566 0.97667 0.97970 1.01285 1.22108 0.95047 1.01157 1.00195 1.19235 0.96137 0.88658 0.85303 0.94860 1.21055 1.30407 1.11508 0.89698 0.92036 1.24905 0.95567 0.95193 0.98684 1.69880 1.39273 1.24184 1.20313 0.86576 0.78966 0.80406 0.81934 1.20872 1.21432 1.19903 1.60969 1.03805 1.63086 1.02956 1.20965 0.97438 0.96883 0.88409 1.19792 0.96507 0.94357 0.95924 1.20855 0.97231 0.99974 0.94031 1.20928 1.00620 0.94417 0.97328 1.18078 0.98271 0.94501 0.94793 1.20988 0.99932 0.95733 0.95854 1.20776 0.98972 0.94811 0.99716 1.20788 0.98833 0.99914 0.94813 1.21068 0.99633 0.94418 0.96843 1.18139 0.97784 0.94256 0.94782 1.20939 0.99964 0.94924 0.94940 0.91521 0.95916 0.95193 0.88929 0.97094 0.93135 0.85425 0.90888 0.95277 0.86188 0.85903 0.85971 0.86412 0.86323 0.85627 0.85282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.39 37.16 0.35 -2.36 16 2 C -0.15 -3.37 5.50 -26.73 -0.15 -3.52 16 3 C 0.21 5.24 2.33 -68.87 -0.16 5.08 16 4 H 0.03 0.90 7.86 -51.93 -0.41 0.49 16 5 C -0.49 -13.15 7.35 -34.44 -0.25 -13.40 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.55 5.22 -17.82 -0.09 1.46 16 8 N -0.90 -25.18 11.39 55.43 0.63 -24.54 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 13 N -0.68 -14.24 6.24 -109.22 -0.68 -14.92 16 14 C 0.09 1.65 5.58 -4.98 -0.03 1.62 16 15 C -0.07 -1.03 5.32 -104.97 -0.56 -1.59 16 16 C -0.10 -1.45 9.58 -39.93 -0.38 -1.83 16 17 C -0.11 -1.48 9.77 -39.48 -0.39 -1.86 16 18 C -0.06 -0.76 5.74 -106.84 -0.61 -1.37 16 19 C -0.11 -1.20 9.77 -39.49 -0.39 -1.58 16 20 C -0.12 -1.28 9.95 -39.93 -0.40 -1.68 16 21 C -0.13 -1.33 9.95 -39.93 -0.40 -1.73 16 22 C -0.10 -1.23 9.77 -39.49 -0.39 -1.62 16 23 C -0.05 -0.70 5.74 -106.83 -0.61 -1.31 16 24 C -0.09 -1.35 9.37 -39.49 -0.37 -1.72 16 25 H 0.07 1.56 7.05 -51.93 -0.37 1.20 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.03 0.58 6.42 -51.92 -0.33 0.24 16 28 H 0.09 2.41 6.25 -51.93 -0.32 2.09 16 29 H 0.01 0.22 7.24 -51.93 -0.38 -0.15 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.33 6.70 6.55 -39.29 -0.26 6.45 16 32 H 0.07 1.32 8.05 -51.93 -0.42 0.90 16 33 H 0.03 0.52 7.17 -51.93 -0.37 0.14 16 34 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 40 H 0.13 1.87 8.06 -52.48 -0.42 1.45 16 LS Contribution 326.08 15.07 4.91 4.91 Total: -1.00 -28.53 326.08 -10.76 -39.29 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -5.78 Total: 6.37 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: -4.82 Total: -27.41 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: -0.05 Total: -39.47 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.53 -10.76 -39.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.592 kcal (2) G-P(sol) polarization free energy of solvation -28.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds