Wall clock time and date at job start Mon Mar 30 2020 01:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47073 * 2 1 4 4 N 1.46898 * 109.46857 * 119.99450 * 2 1 3 5 5 C 1.46897 * 111.00609 * 275.08707 * 4 2 1 6 6 H 1.09000 * 109.46818 * 33.25204 * 5 4 2 7 7 C 1.53000 * 109.47528 * 153.25033 * 5 4 2 8 8 C 1.50700 * 109.47030 * 273.25575 * 5 4 2 9 9 H 1.08000 * 120.00257 * 359.97438 * 8 5 4 10 10 C 1.37884 * 119.99754 * 179.97438 * 8 5 4 11 11 N 1.31518 * 119.99934 * 179.97438 * 10 8 5 12 12 Si 1.86800 * 120.00053 * 359.97438 * 10 8 5 13 13 H 1.48503 * 109.47163 * 90.00261 * 12 10 8 14 14 H 1.48497 * 109.46853 * 210.00030 * 12 10 8 15 15 H 1.48501 * 109.47137 * 330.00480 * 12 10 8 16 16 C 1.50697 * 109.47183 * 239.99652 * 2 1 3 17 17 C 1.39368 * 119.50551 * 279.72677 * 16 2 1 18 18 C 1.36094 * 120.98898 * 180.25434 * 17 16 2 19 19 C 1.40540 * 119.65288 * 0.04356 * 18 17 16 20 20 C 1.40541 * 121.28406 * 179.97438 * 19 18 17 21 21 C 1.36091 * 119.65378 * 180.02562 * 20 19 18 22 22 C 1.39368 * 120.98786 * 359.95381 * 21 20 19 23 23 C 1.36094 * 120.99351 * 0.02854 * 22 21 20 24 24 C 1.40538 * 119.65241 * 359.97438 * 23 22 21 25 25 C 1.36090 * 119.49986 * 100.00455 * 16 2 1 26 26 H 1.09001 * 109.47390 * 65.27639 * 1 2 3 27 27 H 1.09006 * 109.47292 * 185.27639 * 1 2 3 28 28 H 1.09003 * 109.47504 * 305.27409 * 1 2 3 29 29 H 1.00904 * 111.00005 * 151.13145 * 4 2 1 30 30 H 1.08997 * 109.46752 * 57.39331 * 7 5 4 31 31 H 1.09000 * 109.47546 * 177.39241 * 7 5 4 32 32 H 1.09001 * 109.47079 * 297.39812 * 7 5 4 33 33 H 0.96998 * 119.99903 * 180.02562 * 11 10 8 34 34 H 1.07998 * 119.50941 * 0.25087 * 17 16 2 35 35 H 1.08001 * 120.17437 * 180.02562 * 18 17 16 36 36 H 1.08004 * 120.17069 * 0.02625 * 20 19 18 37 37 H 1.08004 * 119.50134 * 179.97438 * 21 20 19 38 38 H 1.08003 * 119.50567 * 180.02562 * 22 21 20 39 39 H 1.07996 * 120.17662 * 180.02562 * 23 22 21 40 40 H 1.08001 * 120.17760 * 359.69146 * 25 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0804 0.2222 2.3474 6 1 1.2731 0.9509 2.2745 7 6 1.9312 -0.5761 3.6441 8 6 3.4059 0.9393 2.3486 9 1 4.1307 0.7357 1.5743 10 6 3.6931 1.8554 3.3383 11 7 4.8501 2.4809 3.3397 12 14 2.4391 2.2080 4.6772 13 1 2.6576 1.2811 5.8166 14 1 2.5931 3.6097 5.1427 15 1 1.0698 2.0135 4.1365 16 6 2.0323 -0.7105 -1.2304 17 6 2.0679 -2.1035 -1.2522 18 6 2.5206 -2.7759 -2.3454 19 6 2.9604 -2.0578 -3.4705 20 6 3.4350 -2.7170 -4.6174 21 6 3.8532 -1.9886 -5.6882 22 6 3.8176 -0.5956 -5.6664 23 6 3.3641 0.0769 -4.5736 24 6 2.9238 -0.6412 -3.4486 25 6 2.4497 0.0180 -2.3014 26 1 -0.3634 0.4298 -0.9335 27 1 -0.3634 -1.0233 0.0945 28 1 -0.3634 0.5935 0.8390 29 1 2.9179 -1.1193 1.0293 30 1 2.7113 -1.3358 3.6948 31 1 2.0227 0.0961 4.4973 32 1 0.9535 -1.0575 3.6639 33 1 5.0523 3.1250 4.0361 34 1 1.7313 -2.6578 -0.3886 35 1 2.5421 -3.8557 -2.3482 36 1 3.4677 -3.7961 -4.6487 37 1 4.2179 -2.4978 -6.5681 38 1 4.1550 -0.0413 -6.5298 39 1 3.3418 1.1566 -4.5712 40 1 2.4160 1.0971 -2.2704 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068607682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:03 Heat of formation + Delta-G solvation = 39.609405 kcal Electronic energy + Delta-G solvation = -19845.738853 eV Core-core repulsion = 17010.750207 eV Total energy + Delta-G solvation = -2834.988646 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.28294 -37.61245 -35.58495 -33.17392 -32.44053 -31.23906 -29.53141 -28.69288 -27.62000 -24.93980 -23.57732 -23.10456 -21.81621 -20.64758 -19.75263 -17.21749 -17.03876 -16.56538 -15.97260 -14.98498 -14.72513 -14.62632 -13.98052 -13.71214 -13.47698 -13.21155 -13.02235 -12.88062 -12.66067 -12.23217 -12.13603 -11.87575 -11.81185 -11.29763 -11.15732 -11.04675 -10.77255 -10.67638 -10.58661 -10.22052 -9.99373 -9.81034 -9.53158 -9.24034 -8.60920 -8.34811 -7.73035 -7.44168 -6.13034 -4.14192 0.67346 1.15449 2.20245 3.13258 3.25057 3.35050 3.37586 4.26189 4.36208 4.67590 4.89567 4.90241 5.05820 5.11129 5.19976 5.23863 5.32744 5.49341 5.53774 5.65456 5.86034 5.89438 5.95566 6.08536 6.10332 6.27025 6.34820 6.40480 6.42217 6.45214 6.53144 6.57655 6.62936 6.73273 6.74067 6.91390 6.95639 7.03149 7.18233 7.25015 7.56201 8.01856 8.35699 8.47933 8.89660 9.50161 11.00026 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027952 B = 0.004415 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.461682 B = 6340.391097 C = 6747.156144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.120 3.880 3 H 0.060 0.940 4 N -0.676 5.676 5 C 0.176 3.824 6 H 0.033 0.967 7 C -0.136 4.136 8 C -0.545 4.545 9 H 0.072 0.928 10 C 0.072 3.928 11 N -0.898 5.898 12 Si 0.892 3.108 13 H -0.278 1.278 14 H -0.299 1.299 15 H -0.266 1.266 16 C -0.065 4.065 17 C -0.089 4.089 18 C -0.119 4.119 19 C -0.055 4.055 20 C -0.107 4.107 21 C -0.125 4.125 22 C -0.126 4.126 23 C -0.103 4.103 24 C -0.049 4.049 25 C -0.106 4.106 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.337 0.663 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.033 0.967 33 H 0.264 0.736 34 H 0.133 0.867 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 -8.199 -14.653 17.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.010 3.990 3 H 0.078 0.922 4 N -0.306 5.306 5 C 0.067 3.933 6 H 0.051 0.949 7 C -0.194 4.194 8 C -0.584 4.584 9 H 0.090 0.910 10 C -0.130 4.130 11 N -0.536 5.536 12 Si 0.723 3.277 13 H -0.205 1.205 14 H -0.226 1.226 15 H -0.191 1.191 16 C -0.066 4.066 17 C -0.107 4.107 18 C -0.137 4.137 19 C -0.055 4.055 20 C -0.125 4.125 21 C -0.143 4.143 22 C -0.144 4.144 23 C -0.121 4.121 24 C -0.049 4.049 25 C -0.124 4.124 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.155 0.845 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.151 0.849 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.143 0.857 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.300 -8.310 -14.380 17.763 hybrid contribution 0.431 0.886 0.609 1.158 sum -5.869 -7.424 -13.771 16.709 Atomic orbital electron populations 1.21770 0.94678 1.01906 1.00589 1.20419 0.94961 0.96505 0.87115 0.92165 1.60936 1.32851 1.33213 1.03587 1.19600 0.96629 0.89969 0.87093 0.94928 1.22016 0.99344 0.99799 0.98262 1.21732 1.01017 1.23038 1.12617 0.90996 1.25015 0.95064 0.95276 0.97692 1.69923 1.22181 1.27170 1.34296 0.86784 0.82461 0.76082 0.82381 1.20531 1.22645 1.19132 1.19895 0.97139 0.93914 0.95603 1.20864 0.97756 0.93935 0.98124 1.20993 1.00195 0.99411 0.93053 1.18099 0.99931 0.92683 0.94822 1.20996 0.99032 0.99516 0.92925 1.20769 1.00829 0.94167 0.98570 1.20775 1.00729 0.94442 0.98425 1.21051 0.98523 0.99718 0.92805 1.18071 0.99553 0.92649 0.94621 1.20957 0.99163 0.99848 0.92479 0.93359 0.92370 0.92544 0.84500 0.93119 0.94410 0.94770 0.92653 0.84895 0.85863 0.85947 0.86434 0.86365 0.85749 0.85623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.35 37.16 0.35 -1.72 16 2 C 0.12 2.15 2.60 -68.87 -0.18 1.97 16 3 H 0.06 1.22 7.51 -51.93 -0.39 0.83 16 4 N -0.68 -13.33 5.40 -102.18 -0.55 -13.89 16 5 C 0.18 4.07 1.98 -68.87 -0.14 3.94 16 6 H 0.03 0.78 6.21 -51.93 -0.32 0.46 16 7 C -0.14 -2.98 9.02 37.16 0.34 -2.64 16 8 C -0.55 -14.97 8.93 -34.44 -0.31 -15.28 16 9 H 0.07 2.16 7.96 -52.49 -0.42 1.75 16 10 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 11 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 12 Si 0.89 21.90 24.40 -169.99 -4.15 17.76 16 13 H -0.28 -6.68 6.85 56.52 0.39 -6.29 16 14 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 15 H -0.27 -6.26 6.53 56.52 0.37 -5.89 16 16 C -0.07 -1.05 4.68 -104.97 -0.49 -1.54 16 17 C -0.09 -1.30 8.89 -39.93 -0.35 -1.66 16 18 C -0.12 -1.58 9.77 -39.48 -0.39 -1.97 16 19 C -0.06 -0.77 5.74 -106.83 -0.61 -1.38 16 20 C -0.11 -1.25 9.77 -39.49 -0.39 -1.63 16 21 C -0.13 -1.35 9.95 -39.93 -0.40 -1.75 16 22 C -0.13 -1.40 9.95 -39.93 -0.40 -1.80 16 23 C -0.10 -1.31 9.77 -39.49 -0.39 -1.69 16 24 C -0.05 -0.72 5.74 -106.83 -0.61 -1.33 16 25 C -0.11 -1.65 9.36 -39.48 -0.37 -2.01 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.92 7.51 -51.93 -0.39 0.53 16 29 H 0.34 6.87 7.62 -39.29 -0.30 6.57 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.04 0.86 3.24 -51.93 -0.17 0.69 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.13 1.89 7.67 -52.49 -0.40 1.48 16 35 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 37 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 38 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 39 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 40 H 0.13 1.84 8.00 -52.49 -0.42 1.42 16 LS Contribution 322.06 15.07 4.85 4.85 Total: -1.00 -29.99 322.06 -9.30 -39.30 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.80 Total: 7.05 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: -4.43 Total: -28.54 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.22 Total: -40.42 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.15 Total: 17.76 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.99 -9.30 -39.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068607682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.906 kcal (2) G-P(sol) polarization free energy of solvation -29.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds