Wall clock time and date at job start Mon Mar 30 2020 01:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47073 * 2 1 4 4 N 1.46898 * 109.46857 * 119.99450 * 2 1 3 5 5 C 1.46897 * 111.00609 * 275.08707 * 4 2 1 6 6 H 1.09000 * 109.46818 * 33.25204 * 5 4 2 7 7 C 1.53000 * 109.47528 * 153.25033 * 5 4 2 8 8 C 1.50700 * 109.47030 * 273.25575 * 5 4 2 9 9 H 1.08000 * 120.00257 * 359.97438 * 8 5 4 10 10 C 1.37884 * 119.99754 * 179.97438 * 8 5 4 11 11 N 1.31518 * 119.99934 * 179.97438 * 10 8 5 12 12 Si 1.86800 * 120.00053 * 359.97438 * 10 8 5 13 13 H 1.48503 * 109.47163 * 90.00261 * 12 10 8 14 14 H 1.48497 * 109.46853 * 210.00030 * 12 10 8 15 15 H 1.48501 * 109.47137 * 330.00480 * 12 10 8 16 16 C 1.50697 * 109.47183 * 239.99652 * 2 1 3 17 17 C 1.39368 * 119.50551 * 279.72677 * 16 2 1 18 18 C 1.36094 * 120.98898 * 180.25434 * 17 16 2 19 19 C 1.40540 * 119.65288 * 0.04356 * 18 17 16 20 20 C 1.40541 * 121.28406 * 179.97438 * 19 18 17 21 21 C 1.36091 * 119.65378 * 180.02562 * 20 19 18 22 22 C 1.39368 * 120.98786 * 359.95381 * 21 20 19 23 23 C 1.36094 * 120.99351 * 0.02854 * 22 21 20 24 24 C 1.40538 * 119.65241 * 359.97438 * 23 22 21 25 25 C 1.36090 * 119.49986 * 100.00455 * 16 2 1 26 26 H 1.09001 * 109.47390 * 65.27639 * 1 2 3 27 27 H 1.09006 * 109.47292 * 185.27639 * 1 2 3 28 28 H 1.09003 * 109.47504 * 305.27409 * 1 2 3 29 29 H 1.00904 * 111.00005 * 151.13145 * 4 2 1 30 30 H 1.08997 * 109.46752 * 57.39331 * 7 5 4 31 31 H 1.09000 * 109.47546 * 177.39241 * 7 5 4 32 32 H 1.09001 * 109.47079 * 297.39812 * 7 5 4 33 33 H 0.96998 * 119.99903 * 180.02562 * 11 10 8 34 34 H 1.07998 * 119.50941 * 0.25087 * 17 16 2 35 35 H 1.08001 * 120.17437 * 180.02562 * 18 17 16 36 36 H 1.08004 * 120.17069 * 0.02625 * 20 19 18 37 37 H 1.08004 * 119.50134 * 179.97438 * 21 20 19 38 38 H 1.08003 * 119.50567 * 180.02562 * 22 21 20 39 39 H 1.07996 * 120.17662 * 180.02562 * 23 22 21 40 40 H 1.08001 * 120.17760 * 359.69146 * 25 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0804 0.2222 2.3474 6 1 1.2731 0.9509 2.2745 7 6 1.9312 -0.5761 3.6441 8 6 3.4059 0.9393 2.3486 9 1 4.1307 0.7357 1.5743 10 6 3.6931 1.8554 3.3383 11 7 4.8501 2.4809 3.3397 12 14 2.4391 2.2080 4.6772 13 1 2.6576 1.2811 5.8166 14 1 2.5931 3.6097 5.1427 15 1 1.0698 2.0135 4.1365 16 6 2.0323 -0.7105 -1.2304 17 6 2.0679 -2.1035 -1.2522 18 6 2.5206 -2.7759 -2.3454 19 6 2.9604 -2.0578 -3.4705 20 6 3.4350 -2.7170 -4.6174 21 6 3.8532 -1.9886 -5.6882 22 6 3.8176 -0.5956 -5.6664 23 6 3.3641 0.0769 -4.5736 24 6 2.9238 -0.6412 -3.4486 25 6 2.4497 0.0180 -2.3014 26 1 -0.3634 0.4298 -0.9335 27 1 -0.3634 -1.0233 0.0945 28 1 -0.3634 0.5935 0.8390 29 1 2.9179 -1.1193 1.0293 30 1 2.7113 -1.3358 3.6948 31 1 2.0227 0.0961 4.4973 32 1 0.9535 -1.0575 3.6639 33 1 5.0523 3.1250 4.0361 34 1 1.7313 -2.6578 -0.3886 35 1 2.5421 -3.8557 -2.3482 36 1 3.4677 -3.7961 -4.6487 37 1 4.2179 -2.4978 -6.5681 38 1 4.1550 -0.0413 -6.5298 39 1 3.3418 1.1566 -4.5712 40 1 2.4160 1.0971 -2.2704 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068607682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:02 Heat of formation + Delta-G solvation = 22.483156 kcal Electronic energy + Delta-G solvation = -19846.481503 eV Core-core repulsion = 17010.750207 eV Total energy + Delta-G solvation = -2835.731296 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.32773 -38.94232 -36.99519 -34.83070 -33.68575 -32.92076 -30.57842 -29.89920 -29.08538 -27.03075 -24.75246 -24.14361 -22.84257 -22.14484 -21.35311 -19.09023 -18.13736 -17.73322 -17.30034 -16.79947 -16.10996 -15.64704 -15.31668 -15.03062 -14.84049 -14.52276 -14.41639 -14.17334 -13.98941 -13.89850 -13.63308 -13.33425 -13.00108 -12.80092 -12.71995 -12.42397 -12.21036 -11.97638 -11.84278 -11.71968 -11.56528 -11.34983 -11.25216 -10.84602 -10.75795 -9.40404 -9.16920 -8.75570 -8.34111 -6.39785 -0.33647 0.12141 1.16906 1.29992 1.34844 1.45797 2.12031 2.29304 3.01873 3.22062 3.44305 3.72508 3.80759 4.03583 4.11096 4.22016 4.36330 4.43933 4.49273 4.53966 4.55695 4.63281 4.69235 4.72968 4.89065 4.92785 4.98277 5.05437 5.07852 5.14758 5.24134 5.35737 5.36689 5.41354 5.48172 5.52462 5.60483 5.69680 5.76094 5.97774 6.09072 6.16178 6.39755 6.60078 6.76057 7.29038 8.82563 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027952 B = 0.004415 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.461682 B = 6340.391097 C = 6747.156144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.121 3.879 3 H 0.025 0.975 4 N -0.660 5.660 5 C 0.180 3.820 6 H 0.029 0.971 7 C -0.133 4.133 8 C -0.544 4.544 9 H 0.028 0.972 10 C 0.014 3.986 11 N -0.948 5.948 12 Si 0.955 3.045 13 H -0.264 1.264 14 H -0.301 1.301 15 H -0.247 1.247 16 C -0.080 4.080 17 C -0.105 4.105 18 C -0.109 4.109 19 C -0.075 4.075 20 C -0.111 4.111 21 C -0.124 4.124 22 C -0.119 4.119 23 C -0.126 4.126 24 C -0.068 4.068 25 C -0.123 4.123 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.332 0.668 30 H 0.050 0.950 31 H 0.031 0.969 32 H 0.063 0.937 33 H 0.265 0.735 34 H 0.137 0.863 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.131 0.869 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.082 -10.133 -15.835 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.011 3.989 3 H 0.043 0.957 4 N -0.289 5.289 5 C 0.071 3.929 6 H 0.047 0.953 7 C -0.191 4.191 8 C -0.583 4.583 9 H 0.046 0.954 10 C -0.184 4.184 11 N -0.588 5.588 12 Si 0.782 3.218 13 H -0.190 1.190 14 H -0.229 1.229 15 H -0.171 1.171 16 C -0.080 4.080 17 C -0.123 4.123 18 C -0.126 4.126 19 C -0.075 4.075 20 C -0.129 4.129 21 C -0.141 4.141 22 C -0.137 4.137 23 C -0.144 4.144 24 C -0.068 4.068 25 C -0.142 4.142 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.149 0.851 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.154 0.846 35 H 0.171 0.829 36 H 0.168 0.832 37 H 0.169 0.831 38 H 0.164 0.836 39 H 0.149 0.851 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.619 -10.264 -15.579 20.152 hybrid contribution 0.950 1.460 0.736 1.891 sum -6.669 -8.804 -14.842 18.501 Atomic orbital electron populations 1.21696 0.92698 1.02597 1.01107 1.20409 0.96465 0.94606 0.87406 0.95734 1.60982 1.32225 1.32110 1.03629 1.19491 0.93667 0.90396 0.89395 0.95335 1.21936 1.01106 0.99468 0.96559 1.22017 1.02052 1.23241 1.11021 0.95395 1.25903 0.97016 0.95106 1.00391 1.70077 1.24614 1.28464 1.35669 0.85758 0.80603 0.75882 0.79539 1.19011 1.22867 1.17065 1.19775 0.98540 0.94778 0.94921 1.20876 0.99218 0.93143 0.99083 1.21324 0.98329 1.00848 0.92133 1.18438 1.00456 0.92506 0.96059 1.21347 0.98311 1.01076 0.92158 1.21223 0.99468 0.94067 0.99380 1.21192 0.98853 0.95150 0.98466 1.21256 0.99678 1.00397 0.93103 1.18296 1.00090 0.93594 0.94827 1.21026 1.00094 0.99727 0.93352 0.91846 0.91212 0.93272 0.85137 0.93119 0.95097 0.91795 0.92575 0.84564 0.82881 0.83171 0.83096 0.83586 0.85073 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.83 9.35 71.98 0.67 -3.15 16 2 C 0.12 4.47 2.60 44.17 0.11 4.58 16 3 H 0.02 1.07 7.51 -2.39 -0.02 1.05 16 4 N -0.66 -26.40 5.40 -477.18 -2.58 -28.97 16 5 C 0.18 8.35 1.98 44.17 0.09 8.44 16 6 H 0.03 1.36 6.21 -2.39 -0.01 1.35 16 7 C -0.13 -5.56 9.02 71.98 0.65 -4.92 16 8 C -0.54 -30.98 8.93 25.60 0.23 -30.75 16 9 H 0.03 1.79 7.96 -2.91 -0.02 1.76 16 10 C 0.01 0.80 5.45 84.66 0.46 1.26 16 11 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 12 Si 0.96 45.14 24.40 68.60 1.67 46.82 16 13 H -0.26 -11.84 6.85 99.48 0.68 -11.16 16 14 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 15 H -0.25 -10.80 6.53 99.48 0.65 -10.15 16 16 C -0.08 -2.66 4.68 -20.09 -0.09 -2.75 16 17 C -0.11 -3.07 8.89 22.04 0.20 -2.87 16 18 C -0.11 -2.75 9.77 22.33 0.22 -2.53 16 19 C -0.07 -1.98 5.74 -21.30 -0.12 -2.10 16 20 C -0.11 -2.26 9.77 22.33 0.22 -2.05 16 21 C -0.12 -2.23 9.95 22.04 0.22 -2.01 16 22 C -0.12 -2.35 9.95 22.04 0.22 -2.13 16 23 C -0.13 -3.14 9.77 22.33 0.22 -2.92 16 24 C -0.07 -2.00 5.74 -21.30 -0.12 -2.13 16 25 C -0.12 -4.03 9.36 22.33 0.21 -3.82 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 28 H 0.05 1.57 7.51 -2.39 -0.02 1.55 16 29 H 0.33 13.94 7.62 -89.69 -0.68 13.25 16 30 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.03 1.33 3.24 -2.39 -0.01 1.32 16 32 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 34 H 0.14 3.78 7.67 -2.91 -0.02 3.76 16 35 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 36 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 38 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 39 H 0.13 2.91 8.06 -2.91 -0.02 2.88 16 40 H 0.12 3.83 8.00 -2.91 -0.02 3.80 16 Total: -1.00 -66.99 322.06 3.03 -63.96 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.26 Total: 27.49 kcal Atomic # 6 Polarization: -53.21 SS G_CDS: 3.37 Total: -49.84 kcal Atomic # 7 Polarization: -86.15 SS G_CDS: -2.28 Total: -88.43 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.67 Total: 46.82 kcal Total: -66.99 3.03 -63.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068607682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.440 kcal (2) G-P(sol) polarization free energy of solvation -66.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds