Wall clock time and date at job start Mon Mar 30 2020 01:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47414 * 2 1 4 4 C 1.50701 * 109.46940 * 120.00482 * 2 1 3 5 5 H 1.07998 * 120.00216 * 120.00142 * 4 2 1 6 6 C 1.37883 * 120.00028 * 299.99185 * 4 2 1 7 7 N 1.31511 * 119.99936 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99572 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47211 * 89.99878 * 8 6 4 10 10 H 1.48508 * 109.46702 * 209.99748 * 8 6 4 11 11 H 1.48497 * 109.47139 * 329.99235 * 8 6 4 12 12 N 1.46900 * 109.46896 * 240.00125 * 2 1 3 13 13 C 1.46900 * 111.00342 * 85.00311 * 12 2 1 14 14 H 1.09004 * 109.46628 * 325.00098 * 13 12 2 15 15 C 1.53000 * 109.47177 * 84.99951 * 13 12 2 16 16 C 1.50699 * 109.47258 * 204.99916 * 13 12 2 17 17 C 1.36122 * 120.17336 * 340.00093 * 16 13 12 18 18 C 1.39329 * 120.99059 * 180.02562 * 17 16 13 19 19 C 1.36135 * 120.98917 * 0.02562 * 18 17 16 20 20 C 1.40496 * 119.64918 * 359.97438 * 19 18 17 21 21 C 1.40549 * 121.28759 * 180.02562 * 20 19 18 22 22 C 1.36094 * 119.65575 * 179.97438 * 21 20 19 23 23 C 1.39379 * 120.99110 * 0.02874 * 22 21 20 24 24 C 1.36095 * 120.99632 * 359.95136 * 23 22 21 25 25 C 1.40498 * 120.17147 * 160.01727 * 16 13 12 26 26 H 1.08999 * 109.47283 * 59.99586 * 1 2 3 27 27 H 1.09001 * 109.47414 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46942 * 300.00055 * 1 2 3 29 29 H 0.97001 * 119.99368 * 180.02562 * 7 6 4 30 30 H 1.00905 * 111.00077 * 208.95774 * 12 2 1 31 31 H 1.08996 * 109.47071 * 59.99675 * 15 13 12 32 32 H 1.08998 * 109.46985 * 180.02562 * 15 13 12 33 33 H 1.09002 * 109.46689 * 300.00121 * 15 13 12 34 34 H 1.08000 * 119.50985 * 0.04062 * 17 16 13 35 35 H 1.07998 * 119.50932 * 180.02562 * 18 17 16 36 36 H 1.07993 * 120.17200 * 179.70094 * 19 18 17 37 37 H 1.08001 * 120.17178 * 359.93364 * 21 20 19 38 38 H 1.07990 * 119.50654 * 179.97438 * 22 21 20 39 39 H 1.08003 * 119.50208 * 179.97438 * 23 22 21 40 40 H 1.07993 * 120.17244 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4828 7 7 2.1380 -0.8592 3.5565 8 14 0.6249 1.2791 2.6541 9 1 -0.8027 0.8728 2.6998 10 1 0.9762 1.9950 3.9069 11 1 0.8474 2.1765 1.4921 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2226 -2.3469 14 1 1.2576 0.9330 -2.2907 15 6 3.4111 0.9808 -2.3224 16 6 1.9785 -0.5676 -3.6259 17 6 2.2547 -1.9005 -3.6310 18 6 2.1647 -2.6474 -4.8037 19 6 1.7983 -2.0657 -5.9788 20 6 1.5055 -0.6920 -6.0127 21 6 1.1234 -0.0564 -7.2066 22 6 0.8467 1.2761 -7.2013 23 6 0.9369 2.0232 -6.0281 24 6 1.3033 1.4418 -4.8534 25 6 1.5964 0.0677 -4.8194 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.9034 -0.5280 4.4375 30 1 2.9172 -1.1206 -1.0288 31 1 4.2359 0.2704 -2.3785 32 1 3.4575 1.6601 -3.1736 33 1 3.4862 1.5523 -1.3973 34 1 2.5479 -2.3865 -2.7122 35 1 2.3889 -3.7036 -4.7803 36 1 1.7374 -2.6562 -6.8809 37 1 1.0503 -0.6223 -8.1235 38 1 0.5538 1.7621 -8.1201 39 1 0.7123 3.0794 -6.0515 40 1 1.3685 2.0333 -3.9522 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068608470.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:07 Heat of formation + Delta-G solvation = 44.836768 kcal Electronic energy + Delta-G solvation = -20142.131971 eV Core-core repulsion = 17307.370001 eV Total energy + Delta-G solvation = -2834.761970 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.42225 -37.34483 -35.97050 -33.75897 -32.04387 -30.58352 -30.18060 -28.63061 -27.47068 -25.13432 -23.65844 -22.83006 -22.67917 -20.30744 -19.59793 -17.31016 -17.07652 -16.62744 -16.02114 -15.37371 -14.61432 -14.28626 -13.94458 -13.73128 -13.60033 -13.39461 -13.12272 -12.83035 -12.71787 -12.51626 -12.17013 -12.04653 -11.64723 -11.34603 -11.24448 -11.09342 -10.91699 -10.77009 -10.57904 -10.24076 -10.12347 -9.63780 -9.49998 -9.06416 -8.63495 -8.46942 -7.69416 -7.53846 -6.12114 -4.11959 0.66181 1.15551 2.18737 3.14584 3.25487 3.34385 3.36832 4.24555 4.36387 4.62669 4.81069 4.94009 5.01946 5.11701 5.20193 5.23291 5.27798 5.46103 5.50965 5.52731 5.62309 5.70613 5.84764 5.96556 6.11687 6.15848 6.27514 6.32017 6.35690 6.41083 6.46369 6.52332 6.54819 6.69060 6.70963 6.81894 6.91591 7.00241 7.18697 7.37290 7.54688 7.90787 8.29406 8.57964 8.92327 9.50163 11.00837 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028123 B = 0.004832 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.392203 B = 5792.813476 C = 6346.370603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.183 3.817 3 H 0.003 0.997 4 C -0.519 4.519 5 H 0.079 0.921 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.890 3.110 9 H -0.278 1.278 10 H -0.298 1.298 11 H -0.269 1.269 12 N -0.671 5.671 13 C 0.116 3.884 14 H 0.082 0.918 15 C -0.175 4.175 16 C -0.048 4.048 17 C -0.098 4.098 18 C -0.107 4.107 19 C -0.126 4.126 20 C -0.052 4.052 21 C -0.110 4.110 22 C -0.122 4.122 23 C -0.127 4.127 24 C -0.101 4.101 25 C -0.047 4.047 26 H 0.024 0.976 27 H 0.058 0.942 28 H 0.037 0.963 29 H 0.264 0.736 30 H 0.341 0.659 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.135 0.865 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.680 2.949 -20.120 20.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.075 3.925 3 H 0.020 0.980 4 C -0.557 4.557 5 H 0.097 0.903 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.721 3.279 9 H -0.205 1.205 10 H -0.226 1.226 11 H -0.194 1.194 12 N -0.301 5.301 13 C 0.005 3.995 14 H 0.100 0.900 15 C -0.234 4.234 16 C -0.048 4.048 17 C -0.116 4.116 18 C -0.125 4.125 19 C -0.144 4.144 20 C -0.052 4.052 21 C -0.128 4.128 22 C -0.140 4.140 23 C -0.145 4.145 24 C -0.119 4.119 25 C -0.047 4.047 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.160 0.840 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.153 0.847 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.295 2.692 -20.060 20.281 hybrid contribution 0.053 1.300 0.461 1.381 sum -1.243 3.993 -19.599 20.040 Atomic orbital electron populations 1.22088 0.98754 1.01099 0.97640 1.19524 0.91633 0.93107 0.88276 0.97964 1.21076 1.32341 1.13767 0.88546 0.90340 1.24921 0.95649 0.96673 0.95764 1.69889 1.45489 1.40255 0.97940 0.86816 0.80755 0.83599 0.76743 1.20509 1.22557 1.19413 1.60614 1.32956 1.31783 1.04790 1.20429 0.96939 0.92969 0.89163 0.89976 1.22484 0.98031 1.00861 1.02023 1.19830 0.97035 0.94570 0.93390 1.20831 0.98859 0.93720 0.98217 1.20928 0.98923 0.99914 0.92765 1.20910 1.01646 0.93528 0.98322 1.18034 1.00305 0.93841 0.93044 1.20967 0.99945 0.94982 0.96882 1.20774 1.00837 0.94369 0.98068 1.20796 1.00919 0.99892 0.92875 1.21139 0.98453 0.93924 0.98355 1.17965 1.00273 0.93601 0.92865 0.95646 0.92307 0.94498 0.92571 0.83984 0.92356 0.92744 0.91762 0.84697 0.86227 0.86171 0.86027 0.86455 0.86353 0.85564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.88 37.15 0.33 -2.76 16 2 C 0.18 4.23 2.00 -68.87 -0.14 4.10 16 3 H 0.00 0.07 6.17 -51.93 -0.32 -0.25 16 4 C -0.52 -14.20 9.17 -34.44 -0.32 -14.52 16 5 H 0.08 2.31 7.86 -52.49 -0.41 1.90 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 7 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 8 Si 0.89 21.89 24.37 -169.99 -4.14 17.75 16 9 H -0.28 -6.72 6.87 56.52 0.39 -6.34 16 10 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.27 -6.34 6.53 56.52 0.37 -5.97 16 12 N -0.67 -13.16 4.87 -102.17 -0.50 -13.66 16 13 C 0.12 1.94 1.95 -68.87 -0.13 1.80 16 14 H 0.08 1.42 5.96 -51.93 -0.31 1.11 16 15 C -0.18 -2.66 9.00 37.16 0.33 -2.33 16 16 C -0.05 -0.74 5.09 -104.53 -0.53 -1.28 16 17 C -0.10 -1.48 9.26 -39.94 -0.37 -1.85 16 18 C -0.11 -1.39 9.95 -39.93 -0.40 -1.78 16 19 C -0.13 -1.56 9.77 -39.49 -0.39 -1.94 16 20 C -0.05 -0.71 5.74 -106.83 -0.61 -1.32 16 21 C -0.11 -1.25 9.77 -39.48 -0.39 -1.63 16 22 C -0.12 -1.31 9.95 -39.93 -0.40 -1.71 16 23 C -0.13 -1.45 9.95 -39.93 -0.40 -1.85 16 24 C -0.10 -1.34 8.73 -39.48 -0.34 -1.69 16 25 C -0.05 -0.69 5.74 -106.83 -0.61 -1.30 16 26 H 0.02 0.50 7.43 -51.93 -0.39 0.11 16 27 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.04 0.85 3.27 -51.93 -0.17 0.68 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.34 6.65 7.49 -39.29 -0.29 6.36 16 31 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 32 H 0.05 0.73 7.23 -51.93 -0.38 0.36 16 33 H 0.06 1.04 7.43 -51.93 -0.39 0.66 16 34 H 0.14 2.08 6.76 -52.49 -0.36 1.72 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 40 H 0.13 1.60 6.18 -52.49 -0.32 1.28 16 LS Contribution 314.75 15.07 4.74 4.74 Total: -1.00 -29.93 314.75 -9.05 -38.98 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.47 Total: 6.60 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: -4.46 Total: -28.09 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.28 Total: -39.98 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.14 Total: 17.75 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.93 -9.05 -38.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068608470.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.821 kcal (2) G-P(sol) polarization free energy of solvation -29.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds