Wall clock time and date at job start Mon Mar 30 2020 01:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47414 * 2 1 4 4 C 1.50701 * 109.46940 * 120.00482 * 2 1 3 5 5 H 1.07998 * 120.00216 * 120.00142 * 4 2 1 6 6 C 1.37883 * 120.00028 * 299.99185 * 4 2 1 7 7 N 1.31511 * 119.99936 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99572 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47211 * 89.99878 * 8 6 4 10 10 H 1.48508 * 109.46702 * 209.99748 * 8 6 4 11 11 H 1.48497 * 109.47139 * 329.99235 * 8 6 4 12 12 N 1.46900 * 109.46896 * 240.00125 * 2 1 3 13 13 C 1.46900 * 111.00342 * 85.00311 * 12 2 1 14 14 H 1.09004 * 109.46628 * 325.00098 * 13 12 2 15 15 C 1.53000 * 109.47177 * 84.99951 * 13 12 2 16 16 C 1.50699 * 109.47258 * 204.99916 * 13 12 2 17 17 C 1.36122 * 120.17336 * 340.00093 * 16 13 12 18 18 C 1.39329 * 120.99059 * 180.02562 * 17 16 13 19 19 C 1.36135 * 120.98917 * 0.02562 * 18 17 16 20 20 C 1.40496 * 119.64918 * 359.97438 * 19 18 17 21 21 C 1.40549 * 121.28759 * 180.02562 * 20 19 18 22 22 C 1.36094 * 119.65575 * 179.97438 * 21 20 19 23 23 C 1.39379 * 120.99110 * 0.02874 * 22 21 20 24 24 C 1.36095 * 120.99632 * 359.95136 * 23 22 21 25 25 C 1.40498 * 120.17147 * 160.01727 * 16 13 12 26 26 H 1.08999 * 109.47283 * 59.99586 * 1 2 3 27 27 H 1.09001 * 109.47414 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46942 * 300.00055 * 1 2 3 29 29 H 0.97001 * 119.99368 * 180.02562 * 7 6 4 30 30 H 1.00905 * 111.00077 * 208.95774 * 12 2 1 31 31 H 1.08996 * 109.47071 * 59.99675 * 15 13 12 32 32 H 1.08998 * 109.46985 * 180.02562 * 15 13 12 33 33 H 1.09002 * 109.46689 * 300.00121 * 15 13 12 34 34 H 1.08000 * 119.50985 * 0.04062 * 17 16 13 35 35 H 1.07998 * 119.50932 * 180.02562 * 18 17 16 36 36 H 1.07993 * 120.17200 * 179.70094 * 19 18 17 37 37 H 1.08001 * 120.17178 * 359.93364 * 21 20 19 38 38 H 1.07990 * 119.50654 * 179.97438 * 22 21 20 39 39 H 1.08003 * 119.50208 * 179.97438 * 23 22 21 40 40 H 1.07993 * 120.17244 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4828 7 7 2.1380 -0.8592 3.5565 8 14 0.6249 1.2791 2.6541 9 1 -0.8027 0.8728 2.6998 10 1 0.9762 1.9950 3.9069 11 1 0.8474 2.1765 1.4921 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2226 -2.3469 14 1 1.2576 0.9330 -2.2907 15 6 3.4111 0.9808 -2.3224 16 6 1.9785 -0.5676 -3.6259 17 6 2.2547 -1.9005 -3.6310 18 6 2.1647 -2.6474 -4.8037 19 6 1.7983 -2.0657 -5.9788 20 6 1.5055 -0.6920 -6.0127 21 6 1.1234 -0.0564 -7.2066 22 6 0.8467 1.2761 -7.2013 23 6 0.9369 2.0232 -6.0281 24 6 1.3033 1.4418 -4.8534 25 6 1.5964 0.0677 -4.8194 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.9034 -0.5280 4.4375 30 1 2.9172 -1.1206 -1.0288 31 1 4.2359 0.2704 -2.3785 32 1 3.4575 1.6601 -3.1736 33 1 3.4862 1.5523 -1.3973 34 1 2.5479 -2.3865 -2.7122 35 1 2.3889 -3.7036 -4.7803 36 1 1.7374 -2.6562 -6.8809 37 1 1.0503 -0.6223 -8.1235 38 1 0.5538 1.7621 -8.1201 39 1 0.7123 3.0794 -6.0515 40 1 1.3685 2.0333 -3.9522 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068608470.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:07 Heat of formation + Delta-G solvation = 27.890966 kcal Electronic energy + Delta-G solvation = -20142.866797 eV Core-core repulsion = 17307.370001 eV Total energy + Delta-G solvation = -2835.496795 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.42065 -38.71038 -37.09099 -35.36300 -33.73510 -31.99758 -31.14878 -29.67628 -28.98315 -27.17160 -24.79343 -23.80192 -23.76242 -21.90863 -20.95232 -18.93297 -18.20457 -17.91820 -17.15775 -16.99509 -15.90801 -15.60557 -15.32744 -14.95344 -14.92068 -14.65715 -14.44772 -14.18384 -14.04228 -13.98261 -13.52545 -13.34147 -13.01506 -12.76415 -12.67928 -12.45571 -12.35059 -12.12841 -12.01795 -11.70969 -11.48299 -11.33692 -11.06758 -10.78727 -10.63551 -9.44101 -9.17253 -8.64678 -8.31959 -6.36059 -0.28973 0.18995 1.20891 1.30013 1.33658 1.44220 2.19805 2.29709 3.03386 3.24588 3.37310 3.74433 4.00734 4.04585 4.12566 4.21882 4.24661 4.32015 4.40565 4.53919 4.56476 4.60732 4.62196 4.73460 4.77692 4.80926 4.89259 4.97793 5.01677 5.15146 5.21271 5.32634 5.40876 5.46163 5.48552 5.59251 5.63691 5.72827 5.82585 6.02207 6.05002 6.21563 6.49301 6.64208 6.81053 7.30453 8.84449 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028123 B = 0.004832 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.392203 B = 5792.813476 C = 6346.370603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.189 3.811 3 H 0.001 0.999 4 C -0.521 4.521 5 H 0.042 0.958 6 C 0.017 3.983 7 N -0.945 5.945 8 Si 0.949 3.051 9 H -0.268 1.268 10 H -0.297 1.297 11 H -0.250 1.250 12 N -0.672 5.672 13 C 0.121 3.879 14 H 0.077 0.923 15 C -0.168 4.168 16 C -0.067 4.067 17 C -0.112 4.112 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.073 4.073 21 C -0.110 4.110 22 C -0.124 4.124 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.063 4.063 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.032 0.968 29 H 0.266 0.734 30 H 0.338 0.662 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.120 0.880 35 H 0.140 0.860 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.142 0.858 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.910 4.411 -23.392 23.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.080 3.920 3 H 0.018 0.982 4 C -0.559 4.559 5 H 0.060 0.940 6 C -0.181 4.181 7 N -0.585 5.585 8 Si 0.777 3.223 9 H -0.194 1.194 10 H -0.225 1.225 11 H -0.174 1.174 12 N -0.302 5.302 13 C 0.011 3.989 14 H 0.095 0.905 15 C -0.226 4.226 16 C -0.068 4.068 17 C -0.131 4.131 18 C -0.139 4.139 19 C -0.134 4.134 20 C -0.073 4.073 21 C -0.128 4.128 22 C -0.141 4.141 23 C -0.138 4.138 24 C -0.144 4.144 25 C -0.063 4.063 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.156 0.844 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.138 0.862 35 H 0.158 0.842 36 H 0.170 0.830 37 H 0.168 0.832 38 H 0.167 0.833 39 H 0.160 0.840 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.525 4.156 -23.364 23.864 hybrid contribution 0.478 0.796 1.334 1.625 sum -2.047 4.952 -22.030 22.672 Atomic orbital electron populations 1.22003 0.97716 1.00870 0.98621 1.19338 0.92360 0.92457 0.87853 0.98176 1.21357 1.31354 1.12664 0.90562 0.94018 1.25750 0.97147 0.99872 0.95368 1.70031 1.47497 1.42398 0.98598 0.85841 0.79195 0.80060 0.77222 1.19432 1.22502 1.17445 1.60560 1.32895 1.32379 1.04395 1.20391 0.97379 0.92579 0.88559 0.90479 1.22388 0.97309 1.00854 1.02070 1.19712 0.99062 0.94760 0.93271 1.20870 0.99549 0.93926 0.98710 1.21119 0.99549 1.00872 0.92352 1.21287 0.99606 0.93449 0.99069 1.18384 1.00863 0.94488 0.93533 1.21330 0.98840 0.95586 0.97045 1.21187 0.99697 0.94286 0.98963 1.21163 0.98993 1.01198 0.92439 1.21225 1.00280 0.93596 0.99325 1.18125 1.00806 0.94478 0.92936 0.93070 0.93217 0.94938 0.92459 0.84369 0.92413 0.90835 0.93098 0.86208 0.84233 0.83042 0.83153 0.83277 0.84012 0.85801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.88 8.88 71.98 0.64 -5.24 16 2 C 0.19 8.81 2.00 44.17 0.09 8.89 16 3 H 0.00 0.03 6.17 -2.39 -0.01 0.02 16 4 C -0.52 -29.44 9.17 25.60 0.23 -29.20 16 5 H 0.04 2.59 7.86 -2.91 -0.02 2.57 16 6 C 0.02 0.96 5.45 84.66 0.46 1.42 16 7 N -0.95 -58.80 13.96 21.45 0.30 -58.50 16 8 Si 0.95 45.05 24.37 68.60 1.67 46.72 16 9 H -0.27 -12.23 6.87 99.48 0.68 -11.55 16 10 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 11 H -0.25 -11.04 6.53 99.48 0.65 -10.39 16 12 N -0.67 -27.02 4.87 -477.16 -2.33 -29.34 16 13 C 0.12 4.06 1.95 44.17 0.09 4.15 16 14 H 0.08 2.64 5.96 -2.39 -0.01 2.62 16 15 C -0.17 -5.10 9.00 71.98 0.65 -4.45 16 16 C -0.07 -2.11 5.09 -19.81 -0.10 -2.21 16 17 C -0.11 -3.42 9.26 22.04 0.20 -3.21 16 18 C -0.12 -3.00 9.95 22.04 0.22 -2.78 16 19 C -0.12 -2.59 9.77 22.33 0.22 -2.37 16 20 C -0.07 -1.79 5.74 -21.30 -0.12 -1.91 16 21 C -0.11 -2.09 9.77 22.33 0.22 -1.87 16 22 C -0.12 -2.14 9.95 22.05 0.22 -1.92 16 23 C -0.12 -2.38 9.95 22.05 0.22 -2.16 16 24 C -0.13 -3.16 8.73 22.34 0.19 -2.96 16 25 C -0.06 -1.78 5.74 -21.30 -0.12 -1.90 16 26 H 0.05 1.95 7.43 -2.39 -0.02 1.93 16 27 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.03 1.44 3.27 -2.39 -0.01 1.43 16 29 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 30 H 0.34 13.86 7.49 -89.69 -0.67 13.19 16 31 H 0.06 1.73 8.13 -2.39 -0.02 1.71 16 32 H 0.07 1.93 7.23 -2.39 -0.02 1.91 16 33 H 0.05 1.66 7.43 -2.39 -0.02 1.64 16 34 H 0.12 3.88 6.76 -2.91 -0.02 3.86 16 35 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 36 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 38 H 0.15 1.62 8.06 -2.92 -0.02 1.60 16 39 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.12 3.02 6.18 -2.91 -0.02 3.00 16 Total: -1.00 -65.90 314.75 3.24 -62.66 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.29 Total: 26.21 kcal Atomic # 6 Polarization: -51.04 SS G_CDS: 3.31 Total: -47.74 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -2.03 Total: -87.85 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.67 Total: 46.72 kcal Total: -65.90 3.24 -62.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068608470.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.548 kcal (2) G-P(sol) polarization free energy of solvation -65.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds