Wall clock time and date at job start Mon Mar 30 2020 01:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46896 * 2 1 4 4 C 1.50700 * 109.47129 * 239.99854 * 2 1 3 5 5 H 1.08001 * 119.99281 * 239.99941 * 4 2 1 6 6 C 1.37869 * 120.00138 * 60.00223 * 4 2 1 7 7 N 1.31514 * 120.00064 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99743 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47376 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.46971 * 119.99747 * 8 6 4 11 11 H 1.48496 * 109.46965 * 239.99512 * 8 6 4 12 12 N 1.46903 * 109.46969 * 119.99263 * 2 1 3 13 13 C 1.46891 * 111.00100 * 275.00210 * 12 2 1 14 14 H 1.09001 * 109.47343 * 35.00267 * 13 12 2 15 15 C 1.53001 * 109.47536 * 274.99825 * 13 12 2 16 16 C 1.50699 * 109.47059 * 155.00303 * 13 12 2 17 17 C 1.36130 * 120.17535 * 24.99597 * 16 13 12 18 18 C 1.39329 * 120.99258 * 180.02562 * 17 16 13 19 19 C 1.36125 * 120.98923 * 359.97438 * 18 17 16 20 20 C 1.40501 * 119.65263 * 0.02562 * 19 18 17 21 21 C 1.40557 * 121.28769 * 179.97438 * 20 19 18 22 22 C 1.36081 * 119.65010 * 180.02562 * 21 20 19 23 23 C 1.39383 * 120.99897 * 0.02562 * 22 21 20 24 24 C 1.36094 * 120.98995 * 359.95151 * 23 22 21 25 25 C 1.40507 * 120.17537 * 205.02349 * 16 13 12 26 26 H 1.08999 * 109.46896 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47614 * 300.00570 * 1 2 3 28 28 H 1.09006 * 109.47433 * 60.00476 * 1 2 3 29 29 H 0.97005 * 119.99846 * 180.02562 * 7 6 4 30 30 H 1.00898 * 110.99350 * 151.04695 * 12 2 1 31 31 H 1.09001 * 109.46531 * 60.00118 * 15 13 12 32 32 H 1.08997 * 109.47380 * 179.97438 * 15 13 12 33 33 H 1.09001 * 109.47166 * 300.00551 * 15 13 12 34 34 H 1.08000 * 119.50276 * 0.04795 * 17 16 13 35 35 H 1.07998 * 119.50912 * 179.97438 * 18 17 16 36 36 H 1.07998 * 120.17668 * 179.72489 * 19 18 17 37 37 H 1.07995 * 120.17070 * 0.02562 * 21 20 19 38 38 H 1.08000 * 119.50492 * 180.02562 * 22 21 20 39 39 H 1.08004 * 119.50833 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.16912 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1206 -4.0078 9 1 3.1465 -2.2872 -3.6036 10 1 1.1661 -1.5870 -4.8159 11 1 3.1467 -0.1877 -4.8164 12 7 2.0196 -0.6924 1.1996 13 6 2.0824 0.2228 2.3468 14 1 1.2575 0.9331 2.2906 15 6 3.4110 0.9811 2.3224 16 6 1.9785 -0.5673 3.6259 17 6 2.3520 -1.8761 3.6539 18 6 2.2626 -2.6227 4.8269 19 6 1.7997 -2.0650 5.9791 20 6 1.4049 -0.7167 5.9891 21 6 0.9214 -0.1062 7.1592 22 6 0.5476 1.2019 7.1310 23 6 0.6360 1.9486 5.9574 24 6 1.0996 1.3914 4.8056 25 6 1.4952 0.0428 4.7957 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 0.7082 1.1607 -3.4845 30 1 2.9172 -1.1203 1.0288 31 1 3.4861 1.5526 1.3973 32 1 3.4573 1.6605 3.1735 33 1 4.2359 0.2708 2.3787 34 1 2.7235 -2.3426 2.7535 35 1 2.5651 -3.6595 4.8219 36 1 1.7318 -2.6571 6.8798 37 1 0.8470 -0.6725 8.0758 38 1 0.1768 1.6687 8.0316 39 1 0.3323 2.9851 5.9621 40 1 1.1629 1.9823 3.9038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068608481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:13 Heat of formation + Delta-G solvation = 36.227499 kcal Electronic energy + Delta-G solvation = -20065.965533 eV Core-core repulsion = 17230.830237 eV Total energy + Delta-G solvation = -2835.135296 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.33938 -37.17515 -35.84020 -33.68192 -31.95378 -30.19671 -30.00258 -28.46482 -26.92589 -25.19511 -23.59517 -22.79305 -22.60714 -20.25226 -19.39152 -17.21338 -17.04888 -16.36892 -15.90292 -14.98308 -14.47349 -14.24221 -13.97458 -13.60731 -13.45132 -13.40370 -13.09577 -12.56303 -12.45223 -12.39696 -11.92084 -11.54934 -11.45633 -11.15997 -11.02659 -10.92450 -10.77967 -10.57071 -10.39070 -10.25075 -10.13271 -9.88781 -9.54050 -8.84012 -8.49849 -8.40493 -7.60621 -7.29928 -6.04140 -4.10376 0.73462 1.22081 2.25950 3.21191 3.27658 3.35818 3.39644 4.31390 4.38922 4.72149 4.91167 5.01716 5.14824 5.19224 5.27257 5.29565 5.39515 5.53851 5.58713 5.64634 5.72399 5.79115 5.93644 6.06093 6.23087 6.28009 6.37014 6.41869 6.46804 6.54564 6.60268 6.76558 6.88475 6.97102 7.05741 7.15414 7.23847 7.25111 7.51448 7.77093 7.88197 8.25744 8.36711 8.64196 9.00093 9.55745 11.02219 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.030338 B = 0.004443 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.706909 B = 6300.000842 C = 6789.224536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.213 3.787 3 H 0.003 0.997 4 C -0.517 4.517 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.680 5.680 13 C 0.117 3.883 14 H 0.083 0.917 15 C -0.173 4.173 16 C -0.042 4.042 17 C -0.101 4.101 18 C -0.107 4.107 19 C -0.128 4.128 20 C -0.052 4.052 21 C -0.112 4.112 22 C -0.122 4.122 23 C -0.128 4.128 24 C -0.098 4.098 25 C -0.047 4.047 26 H 0.031 0.969 27 H 0.003 0.997 28 H 0.080 0.920 29 H 0.260 0.740 30 H 0.332 0.668 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.131 0.869 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.748 -0.617 17.182 17.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.105 3.895 3 H 0.021 0.979 4 C -0.555 4.555 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.310 5.310 13 C 0.006 3.994 14 H 0.101 0.899 15 C -0.232 4.232 16 C -0.043 4.043 17 C -0.120 4.120 18 C -0.125 4.125 19 C -0.146 4.146 20 C -0.052 4.052 21 C -0.130 4.130 22 C -0.140 4.140 23 C -0.146 4.146 24 C -0.116 4.116 25 C -0.048 4.048 26 H 0.050 0.950 27 H 0.022 0.978 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.149 0.851 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.149 0.851 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.037 -0.749 17.178 17.226 hybrid contribution 0.951 0.101 -1.088 1.448 sum 1.988 -0.648 16.091 16.226 Atomic orbital electron populations 1.21731 0.97933 0.99393 0.99265 1.19110 0.92487 0.92481 0.85391 0.97894 1.21279 1.31371 1.12478 0.90416 0.92192 1.24907 0.95043 0.94986 0.99030 1.69908 1.36638 1.22945 1.23340 0.86482 0.78605 0.79622 0.82931 1.19763 1.20995 1.21133 1.60836 1.32050 1.32393 1.05769 1.20417 0.96869 0.92995 0.89095 0.89887 1.22458 0.97990 1.00724 1.01986 1.19909 0.95999 0.94708 0.93671 1.20759 0.99532 0.93830 0.97830 1.20896 0.98963 0.99749 0.92906 1.20885 1.01325 0.93924 0.98469 1.18038 0.99867 0.94073 0.93204 1.20951 0.99683 0.95267 0.97059 1.20772 1.00634 0.94538 0.98014 1.20799 1.00796 0.99980 0.93027 1.21162 0.97762 0.94184 0.98491 1.17986 0.99880 0.93891 0.93020 0.94977 0.97799 0.90110 0.92995 0.85050 0.91675 0.93004 0.92703 0.85108 0.86359 0.86238 0.86084 0.86484 0.86318 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 9.17 37.16 0.34 -2.78 16 2 C 0.21 5.26 2.41 -68.86 -0.17 5.09 16 3 H 0.00 0.09 7.11 -51.93 -0.37 -0.28 16 4 C -0.52 -13.91 8.59 -34.44 -0.30 -14.21 16 5 H 0.06 1.59 7.62 -52.49 -0.40 1.19 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.17 11.32 55.43 0.63 -24.54 16 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.68 -14.08 5.04 -102.17 -0.52 -14.60 16 13 C 0.12 2.09 2.01 -68.87 -0.14 1.96 16 14 H 0.08 1.58 5.67 -51.93 -0.29 1.29 16 15 C -0.17 -2.80 9.13 37.16 0.34 -2.46 16 16 C -0.04 -0.70 5.07 -104.53 -0.53 -1.23 16 17 C -0.10 -1.59 9.25 -39.93 -0.37 -1.95 16 18 C -0.11 -1.44 9.95 -39.94 -0.40 -1.84 16 19 C -0.13 -1.65 9.77 -39.49 -0.39 -2.04 16 20 C -0.05 -0.74 5.74 -106.83 -0.61 -1.35 16 21 C -0.11 -1.34 9.77 -39.48 -0.39 -1.72 16 22 C -0.12 -1.38 9.95 -39.93 -0.40 -1.78 16 23 C -0.13 -1.57 9.95 -39.93 -0.40 -1.97 16 24 C -0.10 -1.40 9.19 -39.48 -0.36 -1.77 16 25 C -0.05 -0.74 5.74 -106.83 -0.61 -1.35 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.00 0.07 7.43 -51.93 -0.39 -0.32 16 28 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.33 6.67 7.37 -39.29 -0.29 6.38 16 31 H 0.06 1.14 7.43 -51.93 -0.39 0.76 16 32 H 0.05 0.75 8.05 -51.93 -0.42 0.33 16 33 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 34 H 0.13 2.06 6.82 -52.49 -0.36 1.70 16 35 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 37 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 40 H 0.13 1.78 6.49 -52.49 -0.34 1.44 16 LS Contribution 323.14 15.07 4.87 4.87 Total: -1.00 -28.81 323.14 -10.16 -38.96 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.65 Total: 7.03 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: -4.47 Total: -27.79 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.11 Total: -39.14 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.81 -10.16 -38.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068608481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.189 kcal (2) G-P(sol) polarization free energy of solvation -28.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds