Wall clock time and date at job start Mon Mar 30 2020 01:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46896 * 2 1 4 4 C 1.50700 * 109.47129 * 239.99854 * 2 1 3 5 5 H 1.08001 * 119.99281 * 239.99941 * 4 2 1 6 6 C 1.37869 * 120.00138 * 60.00223 * 4 2 1 7 7 N 1.31514 * 120.00064 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99743 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47376 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.46971 * 119.99747 * 8 6 4 11 11 H 1.48496 * 109.46965 * 239.99512 * 8 6 4 12 12 N 1.46903 * 109.46969 * 119.99263 * 2 1 3 13 13 C 1.46891 * 111.00100 * 275.00210 * 12 2 1 14 14 H 1.09001 * 109.47343 * 35.00267 * 13 12 2 15 15 C 1.53001 * 109.47536 * 274.99825 * 13 12 2 16 16 C 1.50699 * 109.47059 * 155.00303 * 13 12 2 17 17 C 1.36130 * 120.17535 * 24.99597 * 16 13 12 18 18 C 1.39329 * 120.99258 * 180.02562 * 17 16 13 19 19 C 1.36125 * 120.98923 * 359.97438 * 18 17 16 20 20 C 1.40501 * 119.65263 * 0.02562 * 19 18 17 21 21 C 1.40557 * 121.28769 * 179.97438 * 20 19 18 22 22 C 1.36081 * 119.65010 * 180.02562 * 21 20 19 23 23 C 1.39383 * 120.99897 * 0.02562 * 22 21 20 24 24 C 1.36094 * 120.98995 * 359.95151 * 23 22 21 25 25 C 1.40507 * 120.17537 * 205.02349 * 16 13 12 26 26 H 1.08999 * 109.46896 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47614 * 300.00570 * 1 2 3 28 28 H 1.09006 * 109.47433 * 60.00476 * 1 2 3 29 29 H 0.97005 * 119.99846 * 180.02562 * 7 6 4 30 30 H 1.00898 * 110.99350 * 151.04695 * 12 2 1 31 31 H 1.09001 * 109.46531 * 60.00118 * 15 13 12 32 32 H 1.08997 * 109.47380 * 179.97438 * 15 13 12 33 33 H 1.09001 * 109.47166 * 300.00551 * 15 13 12 34 34 H 1.08000 * 119.50276 * 0.04795 * 17 16 13 35 35 H 1.07998 * 119.50912 * 179.97438 * 18 17 16 36 36 H 1.07998 * 120.17668 * 179.72489 * 19 18 17 37 37 H 1.07995 * 120.17070 * 0.02562 * 21 20 19 38 38 H 1.08000 * 119.50492 * 180.02562 * 22 21 20 39 39 H 1.08004 * 119.50833 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.16912 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1206 -4.0078 9 1 3.1465 -2.2872 -3.6036 10 1 1.1661 -1.5870 -4.8159 11 1 3.1467 -0.1877 -4.8164 12 7 2.0196 -0.6924 1.1996 13 6 2.0824 0.2228 2.3468 14 1 1.2575 0.9331 2.2906 15 6 3.4110 0.9811 2.3224 16 6 1.9785 -0.5673 3.6259 17 6 2.3520 -1.8761 3.6539 18 6 2.2626 -2.6227 4.8269 19 6 1.7997 -2.0650 5.9791 20 6 1.4049 -0.7167 5.9891 21 6 0.9214 -0.1062 7.1592 22 6 0.5476 1.2019 7.1310 23 6 0.6360 1.9486 5.9574 24 6 1.0996 1.3914 4.8056 25 6 1.4952 0.0428 4.7957 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 0.7082 1.1607 -3.4845 30 1 2.9172 -1.1203 1.0288 31 1 3.4861 1.5526 1.3973 32 1 3.4573 1.6605 3.1735 33 1 4.2359 0.2708 2.3787 34 1 2.7235 -2.3426 2.7535 35 1 2.5651 -3.6595 4.8219 36 1 1.7318 -2.6571 6.8798 37 1 0.8470 -0.6725 8.0758 38 1 0.1768 1.6687 8.0316 39 1 0.3323 2.9851 5.9621 40 1 1.1629 1.9823 3.9038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068608481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:13 Heat of formation + Delta-G solvation = 21.883169 kcal Electronic energy + Delta-G solvation = -20066.587550 eV Core-core repulsion = 17230.830237 eV Total energy + Delta-G solvation = -2835.757313 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.40540 -38.60261 -37.05404 -35.37126 -33.48548 -31.62562 -31.12750 -29.59992 -28.65289 -27.28132 -24.79968 -23.84394 -23.75288 -21.91926 -20.86373 -18.70034 -18.21166 -17.75455 -17.05617 -16.81158 -15.81035 -15.79837 -15.21655 -14.88128 -14.76880 -14.64890 -14.26448 -14.09880 -13.91422 -13.55332 -13.38233 -13.25514 -12.86447 -12.69006 -12.52207 -12.38037 -12.29801 -12.21352 -12.09125 -11.91961 -11.68828 -11.31554 -10.88595 -10.63991 -10.58044 -9.43844 -9.05922 -8.64361 -8.13344 -6.27010 -0.28643 0.19066 1.21047 1.40993 1.43070 1.54573 2.20016 2.41392 3.15603 3.25384 3.50218 3.78458 4.02627 4.04896 4.12347 4.22219 4.26826 4.34644 4.41066 4.56427 4.60686 4.69631 4.79346 4.80473 4.87761 4.96247 5.06508 5.10979 5.21819 5.23698 5.31776 5.41013 5.44706 5.48317 5.61649 5.66166 5.73846 5.83442 5.90913 6.03654 6.20957 6.21897 6.48120 6.77389 7.00252 7.43423 8.92695 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.030338 B = 0.004443 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.706909 B = 6300.000842 C = 6789.224536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.220 3.780 3 H -0.025 1.025 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.962 3.038 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.281 1.281 12 N -0.677 5.677 13 C 0.123 3.877 14 H 0.064 0.936 15 C -0.162 4.162 16 C -0.067 4.067 17 C -0.111 4.111 18 C -0.119 4.119 19 C -0.116 4.116 20 C -0.073 4.073 21 C -0.109 4.109 22 C -0.124 4.124 23 C -0.121 4.121 24 C -0.129 4.129 25 C -0.065 4.065 26 H 0.025 0.975 27 H 0.015 0.985 28 H 0.058 0.942 29 H 0.262 0.738 30 H 0.334 0.666 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.121 0.879 35 H 0.144 0.856 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.140 0.860 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.918 -1.560 19.550 19.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.111 3.889 3 H -0.007 1.007 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.787 3.213 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.207 1.207 12 N -0.307 5.307 13 C 0.013 3.987 14 H 0.082 0.918 15 C -0.221 4.221 16 C -0.067 4.067 17 C -0.129 4.129 18 C -0.137 4.137 19 C -0.134 4.134 20 C -0.073 4.073 21 C -0.127 4.127 22 C -0.141 4.141 23 C -0.139 4.139 24 C -0.147 4.147 25 C -0.066 4.066 26 H 0.044 0.956 27 H 0.034 0.966 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.152 0.848 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.162 0.838 36 H 0.172 0.828 37 H 0.171 0.829 38 H 0.169 0.831 39 H 0.158 0.842 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.216 -1.694 19.565 19.676 hybrid contribution 0.856 0.444 -1.680 1.937 sum 2.072 -1.251 17.885 18.048 Atomic orbital electron populations 1.21557 0.98239 0.98628 0.98684 1.18865 0.92201 0.91115 0.86681 1.00741 1.21592 1.31516 1.12620 0.91498 0.92191 1.25713 0.95178 0.95659 1.02003 1.70033 1.37526 1.24154 1.24052 0.85448 0.78068 0.78629 0.79110 1.18999 1.20743 1.20663 1.60728 1.32257 1.32718 1.05009 1.20315 0.96892 0.92569 0.88932 0.91796 1.22329 0.97461 1.00766 1.01556 1.19744 0.98537 0.95194 0.93273 1.20847 0.99692 0.93730 0.98651 1.21127 0.99433 1.00839 0.92290 1.21297 0.99133 0.93606 0.99379 1.18401 1.00539 0.94829 0.93499 1.21347 0.98259 0.95750 0.97309 1.21184 0.99771 0.94467 0.98700 1.21154 0.98938 1.01139 0.92645 1.21204 1.00025 0.94168 0.99267 1.18155 1.00391 0.94646 0.93367 0.95605 0.96630 0.92349 0.92892 0.84782 0.93711 0.91336 0.91950 0.86066 0.83847 0.82811 0.82865 0.83120 0.84174 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.84 9.17 71.98 0.66 -5.18 16 2 C 0.22 11.32 2.41 44.17 0.11 11.42 16 3 H -0.02 -1.41 7.11 -2.39 -0.02 -1.42 16 4 C -0.53 -29.39 8.59 25.60 0.22 -29.17 16 5 H 0.06 3.23 7.62 -2.91 -0.02 3.21 16 6 C 0.01 0.75 5.30 84.65 0.45 1.20 16 7 N -0.92 -53.19 11.32 21.44 0.24 -52.95 16 8 Si 0.96 43.62 29.54 68.60 2.03 45.64 16 9 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 N -0.68 -29.12 5.04 -477.17 -2.41 -31.53 16 13 C 0.12 4.61 2.01 44.17 0.09 4.70 16 14 H 0.06 2.60 5.67 -2.39 -0.01 2.58 16 15 C -0.16 -5.48 9.13 71.98 0.66 -4.82 16 16 C -0.07 -2.25 5.07 -19.80 -0.10 -2.35 16 17 C -0.11 -3.47 9.25 22.04 0.20 -3.27 16 18 C -0.12 -2.99 9.95 22.04 0.22 -2.77 16 19 C -0.12 -2.68 9.77 22.33 0.22 -2.46 16 20 C -0.07 -1.91 5.74 -21.30 -0.12 -2.03 16 21 C -0.11 -2.22 9.77 22.33 0.22 -2.00 16 22 C -0.12 -2.37 9.95 22.04 0.22 -2.15 16 23 C -0.12 -2.74 9.95 22.05 0.22 -2.52 16 24 C -0.13 -3.68 9.19 22.33 0.21 -3.48 16 25 C -0.07 -2.02 5.74 -21.30 -0.12 -2.14 16 26 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.01 0.72 7.43 -2.39 -0.02 0.70 16 28 H 0.06 3.28 6.07 -2.38 -0.01 3.26 16 29 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 30 H 0.33 13.92 7.37 -89.70 -0.66 13.26 16 31 H 0.04 1.66 7.43 -2.39 -0.02 1.64 16 32 H 0.07 2.05 8.05 -2.39 -0.02 2.03 16 33 H 0.06 1.97 8.13 -2.39 -0.02 1.95 16 34 H 0.12 3.89 6.82 -2.91 -0.02 3.88 16 35 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 36 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 37 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 38 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 40 H 0.12 3.44 6.49 -2.91 -0.02 3.42 16 Total: -1.00 -63.14 323.14 3.57 -59.57 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.37 Total: 26.29 kcal Atomic # 6 Polarization: -50.36 SS G_CDS: 3.34 Total: -47.02 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -2.16 Total: -84.48 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -63.14 3.57 -59.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068608481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.451 kcal (2) G-P(sol) polarization free energy of solvation -63.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds