Wall clock time and date at job start Mon Mar 30 2020 01:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46497 * 119.99906 * 2 1 4 4 C 1.52997 * 109.46982 * 270.00191 * 3 2 1 5 5 C 1.53001 * 109.47130 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47170 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00025 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99952 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99647 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00047 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.46963 * 59.99889 * 10 8 6 12 12 H 1.48494 * 109.46866 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.46824 * 299.99982 * 10 8 6 14 14 C 1.39610 * 119.99847 * 180.02562 * 2 1 3 15 15 C 1.40037 * 119.66634 * 180.30122 * 14 2 1 16 16 C 1.35905 * 120.91993 * 180.29097 * 15 14 2 17 17 C 1.40592 * 119.90864 * 359.68944 * 16 15 14 18 18 C 1.40537 * 121.13896 * 180.02562 * 17 16 15 19 19 C 1.36104 * 119.69647 * 180.02562 * 18 17 16 20 20 C 1.39375 * 120.99913 * 359.95594 * 19 18 17 21 21 C 1.36089 * 120.96418 * 0.02562 * 20 19 18 22 22 C 1.40587 * 119.66688 * 0.02562 * 21 20 19 23 23 C 1.37748 * 119.66415 * 359.97438 * 14 2 1 24 24 H 1.09003 * 109.46824 * 270.00009 * 1 2 3 25 25 H 1.08999 * 109.47109 * 29.99885 * 1 2 3 26 26 H 1.08993 * 109.47189 * 150.00285 * 1 2 3 27 27 H 1.08995 * 109.47059 * 30.00045 * 3 2 1 28 28 H 1.09005 * 109.46949 * 150.00385 * 3 2 1 29 29 H 1.09000 * 109.47541 * 299.99991 * 4 3 2 30 30 H 1.08996 * 109.47375 * 60.00276 * 4 3 2 31 31 H 1.09001 * 109.47517 * 300.00413 * 5 4 3 32 32 H 1.09005 * 109.46994 * 60.00076 * 5 4 3 33 33 H 0.97004 * 119.99730 * 180.02562 * 9 8 6 34 34 H 1.08002 * 119.54084 * 359.97438 * 15 14 2 35 35 H 1.08003 * 120.04269 * 179.71985 * 16 15 14 36 36 H 1.08001 * 120.14971 * 0.02618 * 18 17 16 37 37 H 1.07997 * 119.49492 * 179.97438 * 19 18 17 38 38 H 1.07994 * 119.51393 * 180.02562 * 20 19 18 39 39 H 1.08005 * 120.16463 * 180.02562 * 21 20 19 40 40 H 1.08002 * 120.25305 * 0.02645 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2180 3.0351 -1.4425 6 6 3.4697 3.4698 -2.8634 7 1 3.1191 2.8618 -3.6842 8 6 4.1485 4.6432 -3.1153 9 7 4.5767 5.3828 -2.1157 10 14 4.4598 5.1825 -4.8765 11 1 3.1622 5.3613 -5.5761 12 1 5.2040 6.4675 -4.8764 13 1 5.2612 4.1469 -5.5768 14 6 2.1631 -1.2091 -0.0005 15 6 3.5634 -1.2010 0.0059 16 6 4.2685 -2.3628 -0.0004 17 6 3.5904 -3.5943 -0.0069 18 6 4.2936 -4.8111 -0.0130 19 6 3.6073 -5.9865 -0.0197 20 6 2.2137 -6.0039 -0.0198 21 6 1.4989 -4.8459 -0.0137 22 6 2.1730 -3.6122 -0.0077 23 6 1.4674 -2.3979 -0.0005 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5137 27 1 1.6085 2.0283 0.5138 28 1 3.1500 1.1383 0.5138 29 1 3.0415 0.9508 -1.9564 30 1 1.5001 1.8407 -1.9563 31 1 2.6294 3.7950 -0.9285 32 1 4.1705 2.9043 -0.9288 33 1 5.0539 6.2085 -2.2929 34 1 4.0905 -0.2583 0.0107 35 1 5.3483 -2.3400 0.0001 36 1 5.3736 -4.8135 -0.0122 37 1 4.1510 -6.9196 -0.0248 38 1 1.6935 -6.9503 -0.0248 39 1 0.4192 -4.8745 -0.0134 40 1 0.3873 -2.3963 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071089403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:00 Heat of formation + Delta-G solvation = 35.565054 kcal Electronic energy + Delta-G solvation = -19321.177003 eV Core-core repulsion = 16486.012981 eV Total energy + Delta-G solvation = -2835.164022 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.25012 -37.99504 -35.20121 -33.72645 -32.49275 -31.40884 -29.95432 -28.64889 -27.51518 -25.39437 -23.34066 -22.93071 -21.66650 -21.18468 -20.16132 -17.32525 -17.11026 -16.60913 -16.20734 -15.05248 -14.67516 -14.65404 -14.39524 -14.30948 -13.63327 -13.46989 -13.26822 -13.08264 -12.89336 -12.35417 -12.10877 -11.95380 -11.72911 -11.40937 -11.26750 -11.04691 -10.82864 -10.80088 -10.63861 -10.47811 -9.93131 -9.75979 -9.54229 -9.23861 -8.97035 -8.37867 -8.02546 -6.89668 -6.02943 -4.05519 0.71886 1.28400 2.24504 3.18688 3.31784 3.33468 3.36091 3.39472 4.31599 4.44065 4.71095 4.93078 5.03432 5.07330 5.22908 5.32313 5.34023 5.38831 5.44555 5.50715 5.51149 5.58220 5.77111 5.87329 5.93750 6.01396 6.09520 6.16199 6.20136 6.37276 6.47195 6.53792 6.59043 6.70081 6.78320 6.93695 7.03443 7.08984 7.49322 7.61749 7.67431 7.76653 7.95959 8.39369 9.00924 9.58802 11.08121 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025920 B = 0.003572 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.975515 B = 7837.772313 C = 8372.388660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.625 5.625 3 C 0.116 3.884 4 C -0.126 4.126 5 C 0.024 3.976 6 C -0.521 4.521 7 H 0.054 0.946 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.276 1.276 14 C 0.235 3.765 15 C -0.162 4.162 16 C -0.066 4.066 17 C -0.104 4.104 18 C -0.085 4.085 19 C -0.152 4.152 20 C -0.109 4.109 21 C -0.127 4.127 22 C 0.004 3.996 23 C -0.229 4.229 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.016 0.984 32 H 0.016 0.984 33 H 0.261 0.739 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.262 -18.804 6.757 20.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.332 5.332 3 C -0.006 4.006 4 C -0.165 4.165 5 C -0.014 4.014 6 C -0.559 4.559 7 H 0.072 0.928 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.720 3.280 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.202 1.202 14 C 0.131 3.869 15 C -0.182 4.182 16 C -0.085 4.085 17 C -0.105 4.105 18 C -0.103 4.103 19 C -0.170 4.170 20 C -0.127 4.127 21 C -0.146 4.146 22 C 0.003 3.997 23 C -0.254 4.254 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.034 0.966 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.273 -18.403 6.808 20.318 hybrid contribution 0.172 0.463 -1.047 1.158 sum -5.101 -17.939 5.761 19.520 Atomic orbital electron populations 1.21625 0.80017 1.02698 1.00775 1.46806 1.04976 1.03511 1.77920 1.21798 0.96354 0.83209 0.99207 1.22061 1.00587 1.00168 0.93686 1.19041 0.94893 0.90230 0.97204 1.21191 1.35919 1.06360 0.92458 0.92813 1.25017 0.95704 0.96614 0.97054 1.69948 1.38564 1.14297 1.30705 0.86656 0.78387 0.77870 0.85104 1.20247 1.21253 1.20206 1.17849 0.91104 0.85950 0.92044 1.20741 0.92402 0.99434 1.05669 1.20841 0.99470 0.91107 0.97067 1.17968 0.92777 0.93604 1.06178 1.20971 0.99297 0.91815 0.98182 1.20649 0.94318 0.97803 1.04274 1.20748 0.94241 0.97885 0.99812 1.20898 0.99359 0.91715 1.02613 1.17749 0.92177 0.93100 0.96664 1.20495 0.99025 0.90051 1.15796 0.93580 0.91214 0.91616 0.91019 0.90939 0.93038 0.93258 0.96590 0.96547 0.92915 0.85025 0.85544 0.86158 0.86710 0.86694 0.86266 0.85912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.11 10.17 59.85 0.61 1.71 16 2 N -0.62 -9.32 3.01 -179.64 -0.54 -9.86 16 3 C 0.12 1.92 5.15 -4.05 -0.02 1.90 16 4 C -0.13 -2.55 5.48 -26.73 -0.15 -2.70 16 5 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 6 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 7 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 10 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 14 C 0.23 3.57 6.55 -83.82 -0.55 3.02 16 15 C -0.16 -2.44 9.11 -39.74 -0.36 -2.80 16 16 C -0.07 -0.90 9.74 -39.53 -0.39 -1.29 16 17 C -0.10 -1.43 5.74 -106.80 -0.61 -2.04 16 18 C -0.08 -0.99 9.76 -39.48 -0.39 -1.38 16 19 C -0.15 -1.63 9.95 -39.93 -0.40 -2.03 16 20 C -0.11 -1.16 9.95 -39.93 -0.40 -1.56 16 21 C -0.13 -1.51 9.77 -39.47 -0.39 -1.90 16 22 C 0.00 0.05 5.74 -106.84 -0.61 -0.56 16 23 C -0.23 -3.22 8.96 -38.93 -0.35 -3.57 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 26 H 0.07 0.71 6.16 -51.93 -0.32 0.39 16 27 H 0.07 1.13 8.07 -51.93 -0.42 0.71 16 28 H 0.07 1.18 6.14 -51.93 -0.32 0.86 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.13 2.00 6.07 -52.49 -0.32 1.68 16 35 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.11 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 40 H 0.12 1.51 6.08 -52.49 -0.32 1.19 16 LS Contribution 330.41 15.07 4.98 4.98 Total: -1.00 -30.86 330.41 -10.27 -41.13 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.88 Total: -0.74 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -4.54 Total: -26.19 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.20 Total: -35.82 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.86 -10.27 -41.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071089403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.697 kcal (2) G-P(sol) polarization free energy of solvation -30.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds