Wall clock time and date at job start Mon Mar 30 2020 01:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99846 * 2 1 4 4 C 1.52993 * 109.47286 * 287.10340 * 3 2 1 5 5 C 1.53004 * 109.47192 * 180.02562 * 4 3 2 6 6 S 1.80996 * 109.47277 * 179.97438 * 5 4 3 7 7 C 1.76202 * 99.99829 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00426 * 359.97438 * 7 6 5 9 9 C 1.38800 * 119.99961 * 180.02562 * 7 6 5 10 10 N 1.31633 * 119.99943 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00343 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47509 * 89.99748 * 11 9 7 13 13 H 1.48500 * 109.47461 * 210.00195 * 11 9 7 14 14 H 1.48505 * 109.47147 * 330.00163 * 11 9 7 15 15 C 1.46901 * 111.00417 * 123.96027 * 2 1 3 16 16 C 1.53009 * 109.46770 * 284.22935 * 15 2 1 17 17 C 1.52998 * 117.49693 * 134.55944 * 16 15 2 18 18 C 1.52994 * 117.49893 * 65.89775 * 16 15 2 19 19 C 1.52994 * 109.47129 * 164.23006 * 15 2 1 20 20 C 1.53001 * 117.50150 * 1.73484 * 19 15 2 21 21 C 1.52997 * 117.50010 * 293.07217 * 19 15 2 22 22 H 1.09005 * 109.46902 * 304.96419 * 1 2 3 23 23 H 1.08992 * 109.47268 * 64.96661 * 1 2 3 24 24 H 1.09000 * 109.46837 * 184.97087 * 1 2 3 25 25 H 1.08998 * 109.47050 * 47.10579 * 3 2 1 26 26 H 1.09003 * 109.47084 * 167.09671 * 3 2 1 27 27 H 1.09000 * 109.46898 * 299.99723 * 4 3 2 28 28 H 1.08995 * 109.47186 * 60.00380 * 4 3 2 29 29 H 1.08998 * 109.47064 * 300.00190 * 5 4 3 30 30 H 1.09003 * 109.47163 * 59.99340 * 5 4 3 31 31 H 0.97002 * 120.00139 * 180.02562 * 10 9 7 32 32 H 1.09001 * 109.47274 * 44.22228 * 15 2 1 33 33 H 1.09000 * 115.54724 * 280.22883 * 16 15 2 34 34 H 1.08996 * 117.49927 * 359.97438 * 17 16 15 35 35 H 1.09007 * 117.49577 * 145.02152 * 17 16 15 36 36 H 1.09001 * 117.50095 * 214.97863 * 18 16 15 37 37 H 1.08998 * 117.50245 * 359.97438 * 18 16 15 38 38 H 1.09007 * 115.54646 * 147.41098 * 19 15 2 39 39 H 1.08994 * 117.49804 * 359.97438 * 20 19 15 40 40 H 1.09001 * 117.49458 * 145.02516 * 20 19 15 41 41 H 1.09001 * 117.50022 * 214.98374 * 21 19 15 42 42 H 1.08998 * 117.49633 * 359.97438 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7822 1.9996 -1.3786 5 6 2.3310 3.4278 -1.3788 6 16 2.0794 4.1707 -3.0100 7 6 2.7817 5.7627 -2.7327 8 1 3.1943 6.0100 -1.7658 9 6 2.8037 6.6995 -3.7567 10 7 2.2994 6.3987 -4.9348 11 14 3.5489 8.3870 -3.4631 12 1 4.9954 8.3545 -3.7973 13 1 2.8647 9.3866 -4.3221 14 1 3.3790 8.7617 -2.0361 15 6 1.9956 -0.7661 1.1375 16 6 1.8473 0.0568 2.4189 17 6 1.2984 -0.6559 3.6565 18 6 0.4282 0.3556 2.9063 19 6 3.4743 -1.0793 0.9007 20 6 4.1154 -0.5367 -0.3782 21 6 3.8198 -2.0327 -0.2449 22 1 -0.3633 0.5890 0.8422 23 1 -0.3633 0.4348 -0.9310 24 1 -0.3633 -1.0238 0.0890 25 1 1.4726 1.9613 0.7529 26 1 3.0608 1.3517 0.2295 27 1 2.3051 1.4098 -2.1315 28 1 0.7168 2.0195 -1.6080 29 1 1.8086 4.0179 -0.6259 30 1 3.3965 3.4076 -1.1495 31 1 2.3151 7.0532 -5.6506 32 1 1.4383 -1.6975 1.2374 33 1 2.6052 0.8246 2.5748 34 1 1.0426 -1.7107 3.5578 35 1 1.6949 -0.3566 4.6268 36 1 0.2525 1.3198 3.3834 37 1 -0.3999 -0.0336 2.3140 38 1 4.0949 -1.1222 1.7958 39 1 3.4836 0.0430 -1.0511 40 1 5.1579 -0.2230 -0.3245 41 1 4.6680 -2.7026 -0.1037 42 1 2.9937 -2.4372 -0.8296 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074989734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:06 Heat of formation + Delta-G solvation = 49.429399 kcal Electronic energy + Delta-G solvation = -18706.495750 eV Core-core repulsion = 16007.376883 eV Total energy + Delta-G solvation = -2699.118868 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.95634 -36.49109 -35.52496 -32.53932 -32.34842 -28.24640 -26.83010 -25.49358 -23.23810 -22.69788 -22.21046 -21.38014 -20.80685 -19.35538 -17.42802 -16.60051 -15.54732 -15.38960 -14.96454 -14.91588 -14.77650 -14.06815 -13.72559 -13.29080 -13.08647 -12.81734 -12.38898 -11.93136 -11.72879 -11.66610 -11.52972 -11.37104 -11.24628 -11.07258 -10.97660 -10.77402 -10.62175 -10.54706 -10.50875 -10.23500 -9.88762 -9.85773 -9.46932 -9.02738 -8.25514 -8.16058 -6.48309 -6.19647 -3.89235 3.23496 3.24166 3.30836 3.50277 3.63045 3.82272 4.09517 4.26260 4.41012 4.66776 4.80397 4.93129 5.03501 5.10655 5.16243 5.20556 5.24942 5.33673 5.40072 5.42483 5.55540 5.62103 5.62784 5.71128 5.76158 5.77900 5.86804 5.87984 5.96700 6.00490 6.04365 6.07104 6.20952 6.22681 6.37374 6.49452 6.66920 6.84631 7.16575 7.17666 7.63564 8.39800 9.26652 10.88550 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026229 B = 0.003765 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.263917 B = 7435.213039 C = 7713.182515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.528 5.528 3 C 0.054 3.946 4 C -0.093 4.093 5 C -0.111 4.111 6 S -0.133 6.133 7 C -0.516 4.516 8 H 0.071 0.929 9 C 0.071 3.929 10 N -0.870 5.870 11 Si 0.917 3.083 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.273 1.273 15 C 0.145 3.855 16 C -0.176 4.176 17 C -0.176 4.176 18 C -0.186 4.186 19 C -0.152 4.152 20 C -0.173 4.173 21 C -0.172 4.172 22 H 0.040 0.960 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.035 0.965 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.267 0.733 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.217 -15.759 14.323 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.250 5.250 3 C -0.075 4.075 4 C -0.131 4.131 5 C -0.261 4.261 6 S 0.096 5.904 7 C -0.664 4.664 8 H 0.090 0.910 9 C -0.138 4.138 10 N -0.506 5.506 11 Si 0.744 3.256 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.036 3.964 16 C -0.196 4.196 17 C -0.214 4.214 18 C -0.223 4.223 19 C -0.171 4.171 20 C -0.210 4.210 21 C -0.209 4.209 22 H 0.058 0.942 23 H 0.090 0.910 24 H 0.078 0.922 25 H 0.053 0.947 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.139 0.861 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.583 -16.349 12.740 20.787 hybrid contribution 0.792 2.073 2.097 3.054 sum -0.791 -14.275 14.837 20.605 Atomic orbital electron populations 1.22694 0.87838 1.01224 1.01933 1.62231 1.07541 1.14624 1.40613 1.22328 1.00636 0.87107 0.97385 1.21268 1.01538 0.94208 0.96130 1.23226 1.02103 0.97687 1.03041 1.84623 1.80058 1.14930 1.10836 1.22698 1.44787 0.98187 1.00720 0.91045 1.25005 0.95255 0.98966 0.94546 1.70028 1.43038 1.35247 1.02259 0.86185 0.79115 0.82021 0.78311 1.20275 1.20780 1.19734 1.20786 0.93993 0.95286 0.86302 1.23005 0.97450 1.03072 0.96043 1.22937 1.04537 0.97921 0.96020 1.23185 0.94384 1.00710 1.03996 1.22231 0.95365 1.06271 0.93190 1.23247 1.00948 0.96669 1.00174 1.22854 1.02876 0.93184 1.01971 0.94182 0.90977 0.92176 0.94673 0.90129 0.91030 0.91836 0.92501 0.92247 0.92355 0.90214 0.87769 0.88895 0.89082 0.88949 0.87948 0.88133 0.86095 0.89738 0.89731 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 8.38 60.07 0.50 0.62 16 2 N -0.53 -6.24 3.73 -234.89 -0.88 -7.12 16 3 C 0.05 0.73 2.69 -3.83 -0.01 0.72 16 4 C -0.09 -1.54 5.13 -26.73 -0.14 -1.68 16 5 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 6 S -0.13 -3.52 21.44 -107.50 -2.30 -5.82 16 7 C -0.52 -14.97 9.50 30.94 0.29 -14.68 16 8 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 9 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 10 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 11 Si 0.92 21.73 29.55 -169.99 -5.02 16.71 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 15 C 0.14 1.50 2.30 -67.71 -0.16 1.35 16 16 C -0.18 -1.73 3.59 -90.62 -0.33 -2.05 16 17 C -0.18 -1.48 10.18 -26.69 -0.27 -1.75 16 18 C -0.19 -1.72 8.79 -26.70 -0.23 -1.95 16 19 C -0.15 -1.58 5.41 -90.62 -0.49 -2.07 16 20 C -0.17 -2.04 8.28 -26.69 -0.22 -2.26 16 21 C -0.17 -1.78 10.24 -26.69 -0.27 -2.06 16 22 H 0.04 0.42 4.82 -51.93 -0.25 0.17 16 23 H 0.07 0.85 6.94 -51.93 -0.36 0.49 16 24 H 0.06 0.57 7.89 -51.93 -0.41 0.16 16 25 H 0.03 0.49 7.35 -51.93 -0.38 0.11 16 26 H 0.08 1.10 5.63 -51.93 -0.29 0.81 16 27 H 0.07 1.23 7.36 -51.93 -0.38 0.85 16 28 H 0.06 1.08 6.91 -51.93 -0.36 0.72 16 29 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 30 H 0.06 1.21 8.14 -51.91 -0.42 0.78 16 31 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.08 0.80 7.64 -51.93 -0.40 0.41 16 33 H 0.10 1.12 8.00 -51.93 -0.42 0.71 16 34 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 35 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.10 0.92 5.68 -51.93 -0.30 0.63 16 38 H 0.10 0.98 8.06 -51.93 -0.42 0.57 16 39 H 0.12 1.65 4.64 -51.93 -0.24 1.40 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 337.05 15.07 5.08 5.08 Total: -1.00 -30.15 337.05 -10.72 -40.88 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.13 Total: 1.72 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: -1.21 Total: -25.93 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: -0.14 Total: -32.64 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.30 Total: -5.82 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.15 -10.72 -40.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074989734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.306 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds