Wall clock time and date at job start Mon Mar 30 2020 01:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99846 * 2 1 4 4 C 1.52993 * 109.47286 * 287.10340 * 3 2 1 5 5 C 1.53004 * 109.47192 * 180.02562 * 4 3 2 6 6 S 1.80996 * 109.47277 * 179.97438 * 5 4 3 7 7 C 1.76202 * 99.99829 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00426 * 359.97438 * 7 6 5 9 9 C 1.38800 * 119.99961 * 180.02562 * 7 6 5 10 10 N 1.31633 * 119.99943 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00343 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47509 * 89.99748 * 11 9 7 13 13 H 1.48500 * 109.47461 * 210.00195 * 11 9 7 14 14 H 1.48505 * 109.47147 * 330.00163 * 11 9 7 15 15 C 1.46901 * 111.00417 * 123.96027 * 2 1 3 16 16 C 1.53009 * 109.46770 * 284.22935 * 15 2 1 17 17 C 1.52998 * 117.49693 * 134.55944 * 16 15 2 18 18 C 1.52994 * 117.49893 * 65.89775 * 16 15 2 19 19 C 1.52994 * 109.47129 * 164.23006 * 15 2 1 20 20 C 1.53001 * 117.50150 * 1.73484 * 19 15 2 21 21 C 1.52997 * 117.50010 * 293.07217 * 19 15 2 22 22 H 1.09005 * 109.46902 * 304.96419 * 1 2 3 23 23 H 1.08992 * 109.47268 * 64.96661 * 1 2 3 24 24 H 1.09000 * 109.46837 * 184.97087 * 1 2 3 25 25 H 1.08998 * 109.47050 * 47.10579 * 3 2 1 26 26 H 1.09003 * 109.47084 * 167.09671 * 3 2 1 27 27 H 1.09000 * 109.46898 * 299.99723 * 4 3 2 28 28 H 1.08995 * 109.47186 * 60.00380 * 4 3 2 29 29 H 1.08998 * 109.47064 * 300.00190 * 5 4 3 30 30 H 1.09003 * 109.47163 * 59.99340 * 5 4 3 31 31 H 0.97002 * 120.00139 * 180.02562 * 10 9 7 32 32 H 1.09001 * 109.47274 * 44.22228 * 15 2 1 33 33 H 1.09000 * 115.54724 * 280.22883 * 16 15 2 34 34 H 1.08996 * 117.49927 * 359.97438 * 17 16 15 35 35 H 1.09007 * 117.49577 * 145.02152 * 17 16 15 36 36 H 1.09001 * 117.50095 * 214.97863 * 18 16 15 37 37 H 1.08998 * 117.50245 * 359.97438 * 18 16 15 38 38 H 1.09007 * 115.54646 * 147.41098 * 19 15 2 39 39 H 1.08994 * 117.49804 * 359.97438 * 20 19 15 40 40 H 1.09001 * 117.49458 * 145.02516 * 20 19 15 41 41 H 1.09001 * 117.50022 * 214.98374 * 21 19 15 42 42 H 1.08998 * 117.49633 * 359.97438 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7822 1.9996 -1.3786 5 6 2.3310 3.4278 -1.3788 6 16 2.0794 4.1707 -3.0100 7 6 2.7817 5.7627 -2.7327 8 1 3.1943 6.0100 -1.7658 9 6 2.8037 6.6995 -3.7567 10 7 2.2994 6.3987 -4.9348 11 14 3.5489 8.3870 -3.4631 12 1 4.9954 8.3545 -3.7973 13 1 2.8647 9.3866 -4.3221 14 1 3.3790 8.7617 -2.0361 15 6 1.9956 -0.7661 1.1375 16 6 1.8473 0.0568 2.4189 17 6 1.2984 -0.6559 3.6565 18 6 0.4282 0.3556 2.9063 19 6 3.4743 -1.0793 0.9007 20 6 4.1154 -0.5367 -0.3782 21 6 3.8198 -2.0327 -0.2449 22 1 -0.3633 0.5890 0.8422 23 1 -0.3633 0.4348 -0.9310 24 1 -0.3633 -1.0238 0.0890 25 1 1.4726 1.9613 0.7529 26 1 3.0608 1.3517 0.2295 27 1 2.3051 1.4098 -2.1315 28 1 0.7168 2.0195 -1.6080 29 1 1.8086 4.0179 -0.6259 30 1 3.3965 3.4076 -1.1495 31 1 2.3151 7.0532 -5.6506 32 1 1.4383 -1.6975 1.2374 33 1 2.6052 0.8246 2.5748 34 1 1.0426 -1.7107 3.5578 35 1 1.6949 -0.3566 4.6268 36 1 0.2525 1.3198 3.3834 37 1 -0.3999 -0.0336 2.3140 38 1 4.0949 -1.1222 1.7958 39 1 3.4836 0.0430 -1.0511 40 1 5.1579 -0.2230 -0.3245 41 1 4.6680 -2.7026 -0.1037 42 1 2.9937 -2.4372 -0.8296 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074989734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:05 Heat of formation + Delta-G solvation = 33.796150 kcal Electronic energy + Delta-G solvation = -18707.173659 eV Core-core repulsion = 16007.376883 eV Total energy + Delta-G solvation = -2699.796776 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.83334 -37.27393 -36.55810 -34.60901 -33.76772 -29.09617 -28.21848 -27.54255 -24.38290 -23.43356 -23.07581 -22.31144 -21.89345 -20.25776 -19.55049 -17.46276 -16.89477 -16.69397 -16.32511 -16.15058 -15.77166 -15.74446 -14.83335 -14.71040 -14.26486 -13.91112 -13.58360 -13.32631 -13.07591 -12.93249 -12.77497 -12.70821 -12.54337 -12.35311 -12.19892 -12.10752 -12.00498 -11.61629 -11.37597 -11.30701 -11.20863 -11.13676 -10.76545 -10.67083 -10.30518 -9.09552 -8.65758 -8.36967 -6.13075 1.31274 1.39188 1.48445 1.75511 2.28759 2.76462 2.97121 2.98032 3.15839 3.34766 3.63597 3.91400 4.00209 4.07299 4.12432 4.20528 4.28097 4.32631 4.34373 4.42028 4.47668 4.60139 4.69420 4.74183 4.75471 4.84203 4.90144 4.90962 4.95598 5.02260 5.11842 5.17664 5.22057 5.25613 5.28067 5.31912 5.39655 5.40599 5.57121 6.16328 6.18374 6.25613 7.05117 8.72522 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026229 B = 0.003765 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.263917 B = 7435.213039 C = 7713.182515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.534 5.534 3 C 0.072 3.928 4 C -0.080 4.080 5 C -0.085 4.085 6 S -0.196 6.196 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.016 3.984 10 N -0.908 5.908 11 Si 0.993 3.007 12 H -0.267 1.267 13 H -0.273 1.273 14 H -0.263 1.263 15 C 0.148 3.852 16 C -0.185 4.185 17 C -0.161 4.161 18 C -0.191 4.191 19 C -0.144 4.144 20 C -0.191 4.191 21 C -0.164 4.164 22 H 0.046 0.954 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.034 0.966 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.271 0.729 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.874 -16.277 16.155 22.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.256 5.256 3 C -0.058 4.058 4 C -0.118 4.118 5 C -0.235 4.235 6 S 0.032 5.968 7 C -0.687 4.687 8 H 0.090 0.910 9 C -0.189 4.189 10 N -0.544 5.544 11 Si 0.815 3.185 12 H -0.192 1.192 13 H -0.198 1.198 14 H -0.188 1.188 15 C 0.040 3.960 16 C -0.205 4.205 17 C -0.199 4.199 18 C -0.227 4.227 19 C -0.163 4.163 20 C -0.228 4.228 21 C -0.201 4.201 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.052 0.948 26 H 0.099 0.901 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.117 0.883 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.245 -16.884 14.579 22.342 hybrid contribution 0.662 2.141 1.553 2.726 sum -0.582 -14.744 16.132 21.862 Atomic orbital electron populations 1.22724 0.87193 1.02350 1.01468 1.62153 1.08167 1.13375 1.41896 1.22034 1.00786 0.88114 0.94834 1.21142 1.00762 0.91832 0.98113 1.23139 1.02416 0.99233 0.98696 1.84634 1.80411 1.15402 1.16328 1.23045 1.45325 0.99264 1.01063 0.91049 1.26060 0.95384 1.03406 0.94040 1.70159 1.44065 1.36906 1.03273 0.85026 0.78426 0.76347 0.78667 1.19228 1.19842 1.18758 1.20803 0.93936 0.95354 0.85896 1.22902 0.97638 1.03400 0.96583 1.23006 1.03029 0.98269 0.95594 1.23212 0.94116 1.01083 1.04325 1.22297 0.95438 1.05455 0.93084 1.23158 1.00781 0.97725 1.01107 1.22884 1.03136 0.92463 1.01572 0.93622 0.92309 0.90445 0.94767 0.90095 0.91823 0.92246 0.92396 0.92092 0.91960 0.89247 0.88804 0.87788 0.88330 0.89244 0.87654 0.87111 0.88147 0.89669 0.88313 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 8.38 127.69 1.07 1.28 16 2 N -0.53 -11.99 3.73 -897.04 -3.35 -15.34 16 3 C 0.07 1.90 2.69 86.30 0.23 2.13 16 4 C -0.08 -2.66 5.13 30.59 0.16 -2.50 16 5 C -0.09 -3.53 5.67 71.98 0.41 -3.12 16 6 S -0.20 -10.69 21.44 -56.49 -1.21 -11.90 16 7 C -0.54 -31.73 9.50 67.95 0.65 -31.09 16 8 H 0.07 4.05 7.80 -2.91 -0.02 4.03 16 9 C 0.02 0.92 5.49 84.86 0.47 1.39 16 10 N -0.91 -55.51 13.22 21.65 0.29 -55.22 16 11 Si 0.99 44.43 29.55 68.60 2.03 46.46 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 13 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 14 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 15 C 0.15 2.77 2.30 44.92 0.10 2.88 16 16 C -0.19 -3.27 3.59 -10.79 -0.04 -3.31 16 17 C -0.16 -2.27 10.18 30.62 0.31 -1.96 16 18 C -0.19 -3.13 8.79 30.62 0.27 -2.86 16 19 C -0.14 -2.74 5.41 -10.80 -0.06 -2.80 16 20 C -0.19 -4.33 8.28 30.62 0.25 -4.07 16 21 C -0.16 -3.12 10.24 30.62 0.31 -2.81 16 22 H 0.05 0.89 4.82 -2.38 -0.01 0.88 16 23 H 0.06 1.36 6.94 -2.39 -0.02 1.34 16 24 H 0.08 1.31 7.89 -2.39 -0.02 1.30 16 25 H 0.03 0.92 7.35 -2.39 -0.02 0.90 16 26 H 0.08 2.16 5.63 -2.39 -0.01 2.14 16 27 H 0.06 2.24 7.36 -2.39 -0.02 2.22 16 28 H 0.06 2.03 6.91 -2.39 -0.02 2.02 16 29 H 0.06 2.37 8.14 -2.40 -0.02 2.35 16 30 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 32 H 0.09 1.55 7.64 -2.39 -0.02 1.53 16 33 H 0.09 1.87 8.00 -2.39 -0.02 1.86 16 34 H 0.10 1.26 8.09 -2.39 -0.02 1.24 16 35 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.11 1.67 5.68 -2.39 -0.01 1.65 16 38 H 0.11 1.90 8.06 -2.38 -0.02 1.89 16 39 H 0.10 2.72 4.64 -2.39 -0.01 2.71 16 40 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -64.99 337.05 2.86 -62.12 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.98 Total: 20.74 kcal Atomic # 6 Polarization: -50.98 SS G_CDS: 4.13 Total: -46.85 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -3.06 Total: -70.57 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: -10.69 SS G_CDS: -1.21 Total: -11.90 kcal Total: -64.99 2.86 -62.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074989734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.917 kcal (2) G-P(sol) polarization free energy of solvation -64.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds