Wall clock time and date at job start Mon Mar 30 2020 01:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46901 * 109.47512 * 267.45602 * 3 2 1 5 5 C 1.46896 * 111.00234 * 191.11871 * 4 3 2 6 6 C 1.52996 * 109.47226 * 63.91401 * 5 4 3 7 7 C 1.50693 * 109.47457 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99910 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00249 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00138 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99956 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.46957 * 89.99988 * 11 9 7 13 13 H 1.48493 * 109.46898 * 209.99962 * 11 9 7 14 14 H 1.48496 * 109.46942 * 330.00210 * 11 9 7 15 15 C 1.46907 * 110.99970 * 67.16366 * 4 3 2 16 16 H 1.08999 * 110.27047 * 307.68129 * 15 4 3 17 17 C 1.54339 * 110.30536 * 185.49630 * 15 4 3 18 18 C 1.54348 * 102.39394 * 267.42635 * 17 15 4 19 19 C 1.51365 * 105.16782 * 333.65069 * 18 17 15 20 20 C 1.38497 * 130.38925 * 197.18603 * 19 18 17 21 21 C 1.38101 * 120.21635 * 180.02562 * 20 19 18 22 22 C 1.38259 * 119.93423 * 359.97438 * 21 20 19 23 23 C 1.38100 * 119.93547 * 0.02562 * 22 21 20 24 24 C 1.38220 * 109.76029 * 17.19247 * 19 18 17 25 25 H 4.40891 * 5.52278 * 179.97438 * 4 1 2 26 26 H 1.09004 * 109.47312 * 147.45291 * 3 2 1 27 27 H 1.09005 * 109.47293 * 27.45587 * 3 2 1 28 28 H 1.09004 * 109.47028 * 183.91018 * 5 4 3 29 29 H 1.08995 * 109.47342 * 303.90995 * 5 4 3 30 30 H 1.09004 * 109.46804 * 299.99754 * 6 5 4 31 31 H 1.08995 * 109.47292 * 59.99563 * 6 5 4 32 32 H 0.96998 * 120.00139 * 180.02562 * 10 9 7 33 33 H 1.09007 * 110.82262 * 25.65168 * 17 15 4 34 34 H 1.08998 * 110.82294 * 149.19747 * 17 15 4 35 35 H 1.09000 * 110.30399 * 214.72866 * 18 17 15 36 36 H 1.09003 * 110.38284 * 92.61771 * 18 17 15 37 37 H 1.08000 * 119.89378 * 359.97438 * 20 19 18 38 38 H 1.07999 * 120.03573 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.03448 * 180.02562 * 22 21 20 40 40 H 1.08000 * 119.89713 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1357 0.0624 1.3836 5 6 4.5797 0.3293 1.4195 6 6 4.8578 1.7113 0.8249 7 6 6.3393 1.9849 0.8611 8 1 7.0149 1.2471 1.2681 9 6 6.8322 3.1772 0.3748 10 7 8.1251 3.4162 0.4069 11 14 5.6638 4.4531 -0.3297 12 1 5.2164 5.3658 0.7528 13 1 6.3615 5.2363 -1.3808 14 1 4.4846 3.7712 -0.9212 15 6 2.8099 -1.1706 2.1128 16 1 1.7465 -1.3926 2.0233 17 6 3.2078 -1.0356 3.5979 18 6 4.6373 -1.6175 3.6121 19 6 4.6836 -2.5826 2.4470 20 6 5.5742 -3.6046 2.1631 21 6 5.4165 -4.3670 1.0225 22 6 4.3662 -4.1103 0.1608 23 6 3.4772 -3.0916 0.4421 24 6 3.6337 -2.3259 1.5855 25 1 -1.0501 0.0002 0.0000 26 1 3.0089 0.8671 -0.5529 27 1 3.0097 -0.9111 -0.4738 28 1 4.9288 0.3010 2.4518 29 1 5.1040 -0.4288 0.8378 30 1 4.5087 1.7395 -0.2074 31 1 4.3336 2.4694 1.4066 32 1 8.4719 4.2551 0.0651 33 1 3.2122 0.0106 3.9043 34 1 2.5439 -1.6232 4.2319 35 1 4.8216 -2.1451 4.5479 36 1 5.3717 -0.8237 3.4752 37 1 6.3951 -3.8055 2.8355 38 1 6.1129 -5.1629 0.8037 39 1 4.2412 -4.7057 -0.7315 40 1 2.6572 -2.8914 -0.2316 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076996764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:13 Heat of formation + Delta-G solvation = 90.487206 kcal Electronic energy + Delta-G solvation = -20517.449024 eV Core-core repulsion = 17684.666606 eV Total energy + Delta-G solvation = -2832.782419 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.62503 -37.32373 -34.74307 -33.36025 -32.22340 -31.19228 -29.75266 -28.90870 -26.99043 -26.01166 -23.22857 -22.49152 -20.89440 -20.45723 -19.71498 -17.97473 -16.89149 -16.18552 -15.86200 -15.16993 -14.98283 -14.58808 -14.46586 -13.96242 -13.78141 -13.26339 -12.93887 -12.85100 -12.62647 -12.42001 -11.97444 -11.65082 -11.40880 -11.36337 -11.04809 -10.97127 -10.77135 -10.71404 -10.27085 -10.19131 -9.92960 -9.75684 -9.61385 -9.15779 -8.70573 -8.53530 -8.37412 -7.94163 -6.04094 -4.02144 1.46186 1.50697 2.93752 3.05798 3.32866 3.39981 3.44469 3.86226 4.39611 4.46382 4.49463 4.61208 4.82528 5.08539 5.10906 5.19162 5.28273 5.30130 5.40919 5.59541 5.69931 5.74070 5.81478 5.89830 5.94367 6.07155 6.08131 6.14756 6.15002 6.26286 6.37044 6.40620 6.57315 6.59935 6.76397 6.81269 7.11279 7.13162 7.26197 7.51808 7.58240 7.79843 7.85547 8.53202 9.00054 9.58464 11.09178 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015546 B = 0.006552 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.664708 B = 4272.661538 C = 5115.220098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.158 4.158 3 C 0.144 3.856 4 N -0.518 5.518 5 C 0.062 3.938 6 C -0.011 4.011 7 C -0.519 4.519 8 H 0.071 0.929 9 C 0.069 3.931 10 N -0.903 5.903 11 Si 0.879 3.121 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.266 1.266 15 C 0.120 3.880 16 H 0.085 0.915 17 C -0.111 4.111 18 C -0.094 4.094 19 C -0.079 4.079 20 C -0.110 4.110 21 C -0.117 4.117 22 C -0.127 4.127 23 C -0.102 4.102 24 C -0.124 4.124 25 H 0.214 0.786 26 H 0.108 0.892 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.032 0.968 30 H 0.014 0.986 31 H 0.021 0.979 32 H 0.263 0.737 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.393 -13.653 2.758 17.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.158 4.158 3 C 0.017 3.983 4 N -0.240 5.240 5 C -0.064 4.064 6 C -0.048 4.048 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.133 4.133 10 N -0.542 5.542 11 Si 0.707 3.293 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.190 1.190 15 C 0.012 3.988 16 H 0.103 0.897 17 C -0.149 4.149 18 C -0.131 4.131 19 C -0.079 4.079 20 C -0.128 4.128 21 C -0.136 4.136 22 C -0.145 4.145 23 C -0.120 4.120 24 C -0.126 4.126 25 H 0.231 0.769 26 H 0.125 0.875 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.051 0.949 30 H 0.032 0.968 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.473 -13.094 2.956 17.658 hybrid contribution -0.161 0.034 -0.988 1.002 sum -11.634 -13.060 1.968 17.600 Atomic orbital electron populations 1.24731 0.95703 1.02860 1.01007 1.23115 0.94284 0.98874 0.99566 1.19273 0.84467 1.02861 0.91670 1.62521 1.17889 1.31367 1.12214 1.22415 0.83287 0.98782 1.01929 1.19643 0.97376 0.92261 0.95546 1.21037 0.90614 1.03100 1.40977 0.91106 1.24981 0.94906 0.98047 0.95323 1.69912 1.12146 1.24995 1.47150 0.86783 0.81489 0.81816 0.79241 1.20206 1.21493 1.19031 1.21278 0.98228 0.85540 0.93788 0.89697 1.22313 0.95448 1.02497 0.94643 1.21377 0.98572 0.97428 0.95717 1.20623 0.94863 0.95474 0.96963 1.20625 0.98864 0.95608 0.97745 1.20994 0.98067 0.99818 0.94677 1.20985 0.95605 0.98279 0.99604 1.20662 0.99538 0.95410 0.96429 1.21339 0.98328 0.97484 0.95467 0.76948 0.87466 0.92125 0.89986 0.94950 0.96772 0.96075 0.92746 0.89089 0.90854 0.90941 0.88575 0.86372 0.86166 0.86250 0.86714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.96 19.25 29.55 0.57 -2.39 16 2 C -0.16 -2.43 12.42 -37.13 -0.46 -2.90 16 3 C 0.14 2.40 5.21 -6.61 -0.03 2.37 16 4 N -0.52 -8.98 4.46 -230.28 -1.03 -10.01 16 5 C 0.06 1.24 3.59 -3.83 -0.01 1.22 16 6 C -0.01 -0.25 3.94 -27.89 -0.11 -0.36 16 7 C -0.52 -14.71 9.66 -34.44 -0.33 -15.04 16 8 H 0.07 2.15 7.99 -52.48 -0.42 1.74 16 9 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 10 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 11 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 15 C 0.12 1.79 2.97 -67.83 -0.20 1.59 16 16 H 0.08 1.23 7.17 -51.93 -0.37 0.86 16 17 C -0.11 -1.47 6.16 -25.32 -0.16 -1.63 16 18 C -0.09 -1.28 5.96 -26.85 -0.16 -1.44 16 19 C -0.08 -1.15 5.52 -104.21 -0.58 -1.73 16 20 C -0.11 -1.50 10.04 -39.54 -0.40 -1.90 16 21 C -0.12 -1.48 10.05 -39.62 -0.40 -1.88 16 22 C -0.13 -1.62 10.05 -39.62 -0.40 -2.02 16 23 C -0.10 -1.42 8.74 -39.53 -0.35 -1.77 16 24 C -0.12 -1.85 4.08 -104.20 -0.42 -2.28 16 25 H 0.21 1.95 7.80 -54.09 -0.42 1.53 16 26 H 0.11 1.95 5.95 -51.93 -0.31 1.64 16 27 H 0.06 0.97 5.50 -51.93 -0.29 0.69 16 28 H 0.08 1.62 4.45 -51.93 -0.23 1.39 16 29 H 0.03 0.69 7.10 -51.93 -0.37 0.32 16 30 H 0.01 0.34 5.33 -51.93 -0.28 0.06 16 31 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.09 1.26 7.97 -51.93 -0.41 0.85 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 1.47 5.92 -51.93 -0.31 1.16 16 37 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 38 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 39 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.11 1.48 7.34 -52.49 -0.39 1.10 16 LS Contribution 318.62 15.07 4.80 4.80 Total: -1.00 -31.21 318.62 -9.12 -40.33 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -5.47 Total: 2.90 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -3.54 Total: -28.24 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: -0.25 Total: -37.07 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.21 -9.12 -40.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076996764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.818 kcal (2) G-P(sol) polarization free energy of solvation -31.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds