Wall clock time and date at job start Mon Mar 30 2020 01:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46901 * 109.47512 * 267.45602 * 3 2 1 5 5 C 1.46896 * 111.00234 * 191.11871 * 4 3 2 6 6 C 1.52996 * 109.47226 * 63.91401 * 5 4 3 7 7 C 1.50693 * 109.47457 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99910 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00249 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00138 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99956 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.46957 * 89.99988 * 11 9 7 13 13 H 1.48493 * 109.46898 * 209.99962 * 11 9 7 14 14 H 1.48496 * 109.46942 * 330.00210 * 11 9 7 15 15 C 1.46907 * 110.99970 * 67.16366 * 4 3 2 16 16 H 1.08999 * 110.27047 * 307.68129 * 15 4 3 17 17 C 1.54339 * 110.30536 * 185.49630 * 15 4 3 18 18 C 1.54348 * 102.39394 * 267.42635 * 17 15 4 19 19 C 1.51365 * 105.16782 * 333.65069 * 18 17 15 20 20 C 1.38497 * 130.38925 * 197.18603 * 19 18 17 21 21 C 1.38101 * 120.21635 * 180.02562 * 20 19 18 22 22 C 1.38259 * 119.93423 * 359.97438 * 21 20 19 23 23 C 1.38100 * 119.93547 * 0.02562 * 22 21 20 24 24 C 1.38220 * 109.76029 * 17.19247 * 19 18 17 25 25 H 4.40891 * 5.52278 * 179.97438 * 4 1 2 26 26 H 1.09004 * 109.47312 * 147.45291 * 3 2 1 27 27 H 1.09005 * 109.47293 * 27.45587 * 3 2 1 28 28 H 1.09004 * 109.47028 * 183.91018 * 5 4 3 29 29 H 1.08995 * 109.47342 * 303.90995 * 5 4 3 30 30 H 1.09004 * 109.46804 * 299.99754 * 6 5 4 31 31 H 1.08995 * 109.47292 * 59.99563 * 6 5 4 32 32 H 0.96998 * 120.00139 * 180.02562 * 10 9 7 33 33 H 1.09007 * 110.82262 * 25.65168 * 17 15 4 34 34 H 1.08998 * 110.82294 * 149.19747 * 17 15 4 35 35 H 1.09000 * 110.30399 * 214.72866 * 18 17 15 36 36 H 1.09003 * 110.38284 * 92.61771 * 18 17 15 37 37 H 1.08000 * 119.89378 * 359.97438 * 20 19 18 38 38 H 1.07999 * 120.03573 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.03448 * 180.02562 * 22 21 20 40 40 H 1.08000 * 119.89713 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1357 0.0624 1.3836 5 6 4.5797 0.3293 1.4195 6 6 4.8578 1.7113 0.8249 7 6 6.3393 1.9849 0.8611 8 1 7.0149 1.2471 1.2681 9 6 6.8322 3.1772 0.3748 10 7 8.1251 3.4162 0.4069 11 14 5.6638 4.4531 -0.3297 12 1 5.2164 5.3658 0.7528 13 1 6.3615 5.2363 -1.3808 14 1 4.4846 3.7712 -0.9212 15 6 2.8099 -1.1706 2.1128 16 1 1.7465 -1.3926 2.0233 17 6 3.2078 -1.0356 3.5979 18 6 4.6373 -1.6175 3.6121 19 6 4.6836 -2.5826 2.4470 20 6 5.5742 -3.6046 2.1631 21 6 5.4165 -4.3670 1.0225 22 6 4.3662 -4.1103 0.1608 23 6 3.4772 -3.0916 0.4421 24 6 3.6337 -2.3259 1.5855 25 1 -1.0501 0.0002 0.0000 26 1 3.0089 0.8671 -0.5529 27 1 3.0097 -0.9111 -0.4738 28 1 4.9288 0.3010 2.4518 29 1 5.1040 -0.4288 0.8378 30 1 4.5087 1.7395 -0.2074 31 1 4.3336 2.4694 1.4066 32 1 8.4719 4.2551 0.0651 33 1 3.2122 0.0106 3.9043 34 1 2.5439 -1.6232 4.2319 35 1 4.8216 -2.1451 4.5479 36 1 5.3717 -0.8237 3.4752 37 1 6.3951 -3.8055 2.8355 38 1 6.1129 -5.1629 0.8037 39 1 4.2412 -4.7057 -0.7315 40 1 2.6572 -2.8914 -0.2316 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076996764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:13 Heat of formation + Delta-G solvation = 72.900793 kcal Electronic energy + Delta-G solvation = -20518.211628 eV Core-core repulsion = 17684.666606 eV Total energy + Delta-G solvation = -2833.545023 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.76237 -38.54438 -35.92506 -35.24530 -33.68733 -32.54005 -31.27531 -29.95428 -28.14679 -27.66446 -24.85648 -23.54523 -22.28192 -21.74713 -21.04403 -19.15280 -18.89827 -17.39305 -17.10785 -16.44613 -16.18342 -15.98700 -15.75274 -15.66280 -15.07305 -14.70723 -14.60581 -14.05670 -13.93204 -13.63215 -13.44191 -13.25907 -12.85649 -12.62839 -12.38820 -12.25587 -12.03431 -11.93142 -11.78008 -11.64594 -11.58466 -11.49922 -11.17344 -10.94664 -10.73544 -9.76385 -9.49340 -9.29649 -8.30268 -6.33800 0.41061 0.45899 1.35232 1.35835 1.48265 1.81558 1.95911 2.35020 2.80156 3.05162 3.14597 3.43174 3.54176 3.70865 4.06182 4.11587 4.15491 4.22111 4.29592 4.35148 4.47522 4.54509 4.61646 4.67557 4.70749 4.80595 4.88199 4.95777 5.02836 5.12388 5.14082 5.17864 5.26176 5.36166 5.47178 5.53638 5.57983 5.61344 5.71172 6.04855 6.10284 6.14833 6.29136 6.72588 6.74799 7.30565 8.86320 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015546 B = 0.006552 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.664708 B = 4272.661538 C = 5115.220098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.211 4.211 3 C 0.147 3.853 4 N -0.521 5.521 5 C 0.082 3.918 6 C -0.004 4.004 7 C -0.527 4.527 8 H 0.033 0.967 9 C 0.010 3.990 10 N -0.948 5.948 11 Si 0.947 3.053 12 H -0.266 1.266 13 H -0.283 1.283 14 H -0.252 1.252 15 C 0.121 3.879 16 H 0.092 0.908 17 C -0.107 4.107 18 C -0.093 4.093 19 C -0.098 4.098 20 C -0.125 4.125 21 C -0.120 4.120 22 C -0.131 4.131 23 C -0.114 4.114 24 C -0.141 4.141 25 H 0.253 0.747 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.014 0.986 30 H 0.016 0.984 31 H 0.020 0.980 32 H 0.267 0.733 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.132 0.868 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.943 -14.349 2.515 20.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.211 4.211 3 C 0.021 3.979 4 N -0.243 5.243 5 C -0.045 4.045 6 C -0.042 4.042 7 C -0.566 4.566 8 H 0.051 0.949 9 C -0.187 4.187 10 N -0.589 5.589 11 Si 0.770 3.230 12 H -0.191 1.191 13 H -0.208 1.208 14 H -0.175 1.175 15 C 0.013 3.987 16 H 0.110 0.890 17 C -0.145 4.145 18 C -0.129 4.129 19 C -0.098 4.098 20 C -0.143 4.143 21 C -0.138 4.138 22 C -0.149 4.149 23 C -0.132 4.132 24 C -0.142 4.142 25 H 0.269 0.731 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.032 0.968 30 H 0.034 0.966 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.150 0.850 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.039 -13.809 2.719 19.879 hybrid contribution 0.638 0.142 -0.906 1.118 sum -13.401 -13.667 1.813 19.226 Atomic orbital electron populations 1.25632 0.96401 0.99934 0.98139 1.23016 0.94368 1.01536 1.02219 1.19083 0.85990 1.01929 0.90929 1.62461 1.15374 1.33365 1.13070 1.22011 0.85363 0.95940 1.01141 1.19521 0.94230 0.94513 0.95910 1.21325 0.92549 1.02364 1.40324 0.94884 1.25900 0.96584 1.00440 0.95758 1.70053 1.14283 1.25970 1.48578 0.85707 0.79506 0.78947 0.78799 1.19104 1.20836 1.17538 1.21328 0.98581 0.84492 0.94257 0.88995 1.22343 0.95664 1.02434 0.94051 1.21333 0.98179 0.96774 0.96625 1.20851 0.95356 0.96165 0.97448 1.20947 0.99143 0.95601 0.98587 1.21372 0.98325 1.00064 0.94051 1.21342 0.95110 0.98005 1.00403 1.20879 1.00215 0.95806 0.96347 1.21406 0.98749 0.97905 0.96172 0.73050 0.89645 0.92050 0.89999 0.96820 0.96605 0.96118 0.92457 0.89917 0.88289 0.88788 0.91038 0.85001 0.83562 0.83765 0.86073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.21 19.25 74.32 1.43 -2.78 16 2 C -0.21 -6.16 12.42 31.12 0.39 -5.77 16 3 C 0.15 4.90 5.21 84.50 0.44 5.34 16 4 N -0.52 -18.04 4.46 -882.48 -3.94 -21.98 16 5 C 0.08 3.39 3.59 86.30 0.31 3.70 16 6 C 0.00 -0.20 3.94 29.84 0.12 -0.08 16 7 C -0.53 -30.93 9.66 25.60 0.25 -30.69 16 8 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 9 C 0.01 0.61 5.47 84.66 0.46 1.07 16 10 N -0.95 -60.00 13.96 21.45 0.30 -59.70 16 11 Si 0.95 45.41 27.47 68.60 1.88 47.29 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 14 H -0.25 -11.40 6.54 99.48 0.65 -10.75 16 15 C 0.12 3.53 2.97 44.84 0.13 3.66 16 16 H 0.09 2.54 7.17 -2.39 -0.02 2.52 16 17 C -0.11 -2.74 6.16 31.51 0.19 -2.55 16 18 C -0.09 -2.50 5.96 30.52 0.18 -2.32 16 19 C -0.10 -2.83 5.52 -19.60 -0.11 -2.94 16 20 C -0.12 -3.30 10.04 22.30 0.22 -3.08 16 21 C -0.12 -2.85 10.05 22.24 0.22 -2.63 16 22 C -0.13 -3.14 10.05 22.24 0.22 -2.92 16 23 C -0.11 -3.09 8.74 22.30 0.19 -2.90 16 24 C -0.14 -4.13 4.08 -19.59 -0.08 -4.21 16 25 H 0.25 3.35 7.80 -4.41 -0.03 3.32 16 26 H 0.09 3.14 5.95 -2.38 -0.01 3.13 16 27 H 0.06 1.98 5.50 -2.38 -0.01 1.97 16 28 H 0.08 3.36 4.45 -2.39 -0.01 3.35 16 29 H 0.01 0.60 7.10 -2.39 -0.02 0.59 16 30 H 0.02 0.76 5.33 -2.39 -0.01 0.75 16 31 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 32 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 33 H 0.08 2.25 7.97 -2.38 -0.02 2.23 16 34 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 2.28 5.92 -2.39 -0.01 2.26 16 37 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 38 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 39 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 40 H 0.12 3.03 7.34 -2.91 -0.02 3.01 16 Total: -1.00 -68.72 318.62 3.80 -64.92 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.97 Total: 18.54 kcal Atomic # 6 Polarization: -53.65 SS G_CDS: 4.58 Total: -49.07 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -3.64 Total: -81.68 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.29 kcal Total: -68.72 3.80 -64.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076996764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.824 kcal (2) G-P(sol) polarization free energy of solvation -68.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds