Wall clock time and date at job start Mon Mar 30 2020 01:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47011 * 269.99489 * 3 2 1 5 5 H 1.48498 * 109.47112 * 29.99757 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99868 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47006 * 180.02562 * 11 10 9 13 13 C 1.47015 * 110.99629 * 293.63553 * 12 11 10 14 14 C 1.53099 * 109.25444 * 177.60965 * 13 12 11 15 15 O 1.43020 * 109.25921 * 56.85026 * 14 13 12 16 16 C 1.43018 * 113.73692 * 301.32545 * 15 14 13 17 17 H 1.08992 * 109.51039 * 298.73989 * 16 15 14 18 18 C 1.53001 * 109.54186 * 178.62484 * 16 15 14 19 19 H 1.08998 * 110.27816 * 299.49767 * 18 16 15 20 20 C 1.54943 * 110.30846 * 61.59035 * 18 16 15 21 21 C 1.55416 * 100.89431 * 155.28549 * 20 18 16 22 22 C 1.54378 * 102.30813 * 325.99312 * 21 20 18 23 23 O 1.43237 * 107.59260 * 21.28240 * 22 21 20 24 24 C 1.47012 * 110.99820 * 170.00535 * 12 11 10 25 25 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 27 27 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 28 28 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 29 29 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 30 30 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 31 31 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 32 32 H 1.09004 * 109.50787 * 297.53890 * 13 12 11 33 33 H 1.08995 * 109.50754 * 57.68018 * 13 12 11 34 34 H 1.09001 * 109.50741 * 296.91648 * 14 13 12 35 35 H 1.08997 * 109.50715 * 176.78167 * 14 13 12 36 36 H 1.08996 * 111.12631 * 273.28017 * 20 18 16 37 37 H 1.09006 * 111.12561 * 37.44116 * 20 18 16 38 38 H 1.08997 * 110.88103 * 207.75205 * 21 20 18 39 39 H 1.08999 * 110.92934 * 84.25307 * 21 20 18 40 40 H 1.09005 * 109.82851 * 261.76978 * 22 21 20 41 41 H 1.08994 * 109.83101 * 140.79616 * 22 21 20 42 42 H 1.09004 * 109.50451 * 302.32320 * 24 12 11 43 43 H 1.08996 * 109.51309 * 62.45187 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 7 2.4347 -6.1037 0.0018 13 6 3.1953 -6.1472 -1.2555 14 6 4.2169 -7.2855 -1.1885 15 8 3.5362 -8.5154 -0.9247 16 6 2.7857 -8.5084 0.2927 17 1 3.4588 -8.3449 1.1343 18 6 2.0726 -9.8514 0.4621 19 1 1.3874 -10.0226 -0.3681 20 6 3.1066 -11.0018 0.5520 21 6 2.2925 -12.0678 1.3370 22 6 1.4322 -11.1976 2.2782 23 8 1.3619 -9.8846 1.7100 24 6 1.7496 -7.3824 0.2406 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 2.8718 -3.6044 0.8905 29 1 2.8717 -3.6045 -0.8894 30 1 0.8537 -5.0446 0.8914 31 1 0.8531 -5.0451 -0.8886 32 1 2.5129 -6.3191 -2.0880 33 1 3.7149 -5.1999 -1.3995 34 1 4.9316 -7.0866 -0.3900 35 1 4.7439 -7.3581 -2.1399 36 1 3.3783 -11.3642 -0.4393 37 1 3.9900 -10.6931 1.1111 38 1 2.9542 -12.7193 1.9077 39 1 1.6632 -12.6503 0.6641 40 1 1.8954 -11.1497 3.2637 41 1 0.4305 -11.6195 2.3592 42 1 1.2139 -7.3367 1.1888 43 1 1.0441 -7.5740 -0.5678 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089152760.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:26 Heat of formation + Delta-G solvation = -100.839107 kcal Electronic energy + Delta-G solvation = -20990.038170 eV Core-core repulsion = 17841.650300 eV Total energy + Delta-G solvation = -3148.387870 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.21095 -38.91094 -36.13676 -33.52436 -32.44875 -32.20246 -31.28596 -28.93995 -27.52337 -25.24536 -24.09882 -22.72878 -21.89967 -21.28643 -20.33388 -19.82230 -17.33606 -16.70483 -16.22109 -15.94957 -15.57572 -15.13539 -15.06567 -14.67734 -14.34330 -14.11961 -13.76964 -13.57564 -13.42284 -12.96724 -12.28029 -12.04676 -11.80239 -11.70687 -11.66184 -11.43066 -11.36230 -11.12798 -11.08576 -10.82464 -10.59263 -10.45458 -10.42922 -9.77915 -9.65721 -9.58062 -9.27626 -9.00717 -8.31908 -8.11481 -5.97156 -3.99201 3.09089 3.33768 3.39816 3.43645 3.95300 4.11391 4.22778 4.48728 4.51610 4.60781 4.81937 4.92566 4.98604 5.08640 5.19493 5.23257 5.29469 5.38589 5.39473 5.44856 5.48416 5.58359 5.64250 5.65994 5.76967 5.86520 5.89427 5.94640 6.00187 6.09988 6.33050 6.70523 6.74511 6.76831 7.07127 7.13470 7.32035 7.35152 7.71248 7.86330 8.03406 8.46602 9.08012 9.64589 11.14364 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039104 B = 0.003124 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.865742 B = 8960.433729 C = 9430.931561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.104 4.104 11 C 0.057 3.943 12 N -0.538 5.538 13 C 0.013 3.987 14 C 0.069 3.931 15 O -0.383 6.383 16 C 0.099 3.901 17 H 0.072 0.928 18 C 0.090 3.910 19 H 0.077 0.923 20 C -0.142 4.142 21 C -0.158 4.158 22 C 0.051 3.949 23 O -0.372 6.372 24 C 0.028 3.972 25 H 0.260 0.740 26 H 0.013 0.987 27 H 0.016 0.984 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.039 0.961 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.882 -24.264 0.462 24.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.142 4.142 11 C -0.070 4.070 12 N -0.262 5.262 13 C -0.115 4.115 14 C -0.008 4.008 15 O -0.302 6.302 16 C 0.040 3.960 17 H 0.090 0.910 18 C 0.032 3.968 19 H 0.095 0.905 20 C -0.179 4.179 21 C -0.196 4.196 22 C -0.025 4.025 23 O -0.292 6.292 24 C -0.100 4.100 25 H 0.070 0.930 26 H 0.032 0.968 27 H 0.034 0.966 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.958 -24.052 0.825 24.793 hybrid contribution -0.163 0.930 -0.611 1.124 sum 5.795 -23.123 0.215 23.839 Atomic orbital electron populations 1.69970 1.06065 1.26543 1.51034 1.25037 0.94847 0.99259 0.95408 0.86594 0.79875 0.83490 0.78050 1.20717 1.21237 1.19853 1.21251 0.93033 0.91040 1.50317 0.92687 1.19073 0.94036 0.91372 0.97113 1.21649 0.99165 0.92659 1.00710 1.22318 0.93598 0.90700 1.00415 1.62304 1.27423 1.03008 1.33500 1.22835 0.97173 1.00279 0.91207 1.22688 0.93744 0.82890 1.01494 1.87838 1.65853 1.35703 1.40845 1.22050 0.92890 0.93181 0.87852 0.90972 1.22724 0.92798 0.93775 0.87468 0.90470 1.23213 0.98426 0.94579 1.01720 1.23172 0.99031 0.98536 0.98855 1.23138 0.99815 0.82696 0.96882 1.88417 1.74391 1.30379 1.36002 1.22692 0.95641 0.89495 1.02176 0.93043 0.96849 0.96564 0.92571 0.93518 0.91015 0.95219 0.94237 0.88800 0.92235 0.88420 0.89416 0.90198 0.89992 0.90523 0.91191 0.91281 0.89141 0.94448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.10 -2.22 5.09 -26.73 -0.14 -2.35 16 11 C 0.06 1.04 4.96 -3.82 -0.02 1.02 16 12 N -0.54 -8.63 4.73 -234.30 -1.11 -9.74 16 13 C 0.01 0.19 5.44 -3.71 -0.02 0.17 16 14 C 0.07 0.82 7.01 37.21 0.26 1.08 16 15 O -0.38 -4.89 10.19 -35.23 -0.36 -5.25 16 16 C 0.10 1.24 2.58 -26.68 -0.07 1.17 16 17 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 18 C 0.09 0.98 3.19 -25.70 -0.08 0.90 16 19 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 20 C -0.14 -1.20 6.32 -24.42 -0.15 -1.36 16 21 C -0.16 -1.07 7.02 -24.73 -0.17 -1.25 16 22 C 0.05 0.43 7.80 37.88 0.30 0.72 16 23 O -0.37 -4.37 10.60 -35.23 -0.37 -4.75 16 24 C 0.03 0.41 4.78 -3.71 -0.02 0.39 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.97 6.52 -51.93 -0.34 0.63 16 30 H 0.07 1.32 8.04 -51.93 -0.42 0.91 16 31 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 1.37 6.38 -51.93 -0.33 1.04 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 1.34 7.84 -51.93 -0.41 0.93 16 43 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 338.36 15.07 5.10 5.10 Total: -1.00 -31.41 338.36 -9.49 -40.89 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -7.79 Total: -3.69 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -0.67 Total: -12.83 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: -0.37 Total: -36.43 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -0.73 Total: -10.00 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.41 -9.49 -40.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089152760.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.947 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds