Wall clock time and date at job start Mon Mar 30 2020 01:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47011 * 269.99489 * 3 2 1 5 5 H 1.48498 * 109.47112 * 29.99757 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99868 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47006 * 180.02562 * 11 10 9 13 13 C 1.47015 * 110.99629 * 293.63553 * 12 11 10 14 14 C 1.53099 * 109.25444 * 177.60965 * 13 12 11 15 15 O 1.43020 * 109.25921 * 56.85026 * 14 13 12 16 16 C 1.43018 * 113.73692 * 301.32545 * 15 14 13 17 17 H 1.08992 * 109.51039 * 298.73989 * 16 15 14 18 18 C 1.53001 * 109.54186 * 178.62484 * 16 15 14 19 19 H 1.08998 * 110.27816 * 299.49767 * 18 16 15 20 20 C 1.54943 * 110.30846 * 61.59035 * 18 16 15 21 21 C 1.55416 * 100.89431 * 155.28549 * 20 18 16 22 22 C 1.54378 * 102.30813 * 325.99312 * 21 20 18 23 23 O 1.43237 * 107.59260 * 21.28240 * 22 21 20 24 24 C 1.47012 * 110.99820 * 170.00535 * 12 11 10 25 25 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 27 27 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 28 28 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 29 29 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 30 30 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 31 31 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 32 32 H 1.09004 * 109.50787 * 297.53890 * 13 12 11 33 33 H 1.08995 * 109.50754 * 57.68018 * 13 12 11 34 34 H 1.09001 * 109.50741 * 296.91648 * 14 13 12 35 35 H 1.08997 * 109.50715 * 176.78167 * 14 13 12 36 36 H 1.08996 * 111.12631 * 273.28017 * 20 18 16 37 37 H 1.09006 * 111.12561 * 37.44116 * 20 18 16 38 38 H 1.08997 * 110.88103 * 207.75205 * 21 20 18 39 39 H 1.08999 * 110.92934 * 84.25307 * 21 20 18 40 40 H 1.09005 * 109.82851 * 261.76978 * 22 21 20 41 41 H 1.08994 * 109.83101 * 140.79616 * 22 21 20 42 42 H 1.09004 * 109.50451 * 302.32320 * 24 12 11 43 43 H 1.08996 * 109.51309 * 62.45187 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 7 2.4347 -6.1037 0.0018 13 6 3.1953 -6.1472 -1.2555 14 6 4.2169 -7.2855 -1.1885 15 8 3.5362 -8.5154 -0.9247 16 6 2.7857 -8.5084 0.2927 17 1 3.4588 -8.3449 1.1343 18 6 2.0726 -9.8514 0.4621 19 1 1.3874 -10.0226 -0.3681 20 6 3.1066 -11.0018 0.5520 21 6 2.2925 -12.0678 1.3370 22 6 1.4322 -11.1976 2.2782 23 8 1.3619 -9.8846 1.7100 24 6 1.7496 -7.3824 0.2406 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 2.8718 -3.6044 0.8905 29 1 2.8717 -3.6045 -0.8894 30 1 0.8537 -5.0446 0.8914 31 1 0.8531 -5.0451 -0.8886 32 1 2.5129 -6.3191 -2.0880 33 1 3.7149 -5.1999 -1.3995 34 1 4.9316 -7.0866 -0.3900 35 1 4.7439 -7.3581 -2.1399 36 1 3.3783 -11.3642 -0.4393 37 1 3.9900 -10.6931 1.1111 38 1 2.9542 -12.7193 1.9077 39 1 1.6632 -12.6503 0.6641 40 1 1.8954 -11.1497 3.2637 41 1 0.4305 -11.6195 2.3592 42 1 1.2139 -7.3367 1.1888 43 1 1.0441 -7.5740 -0.5678 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089152760.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:26 Heat of formation + Delta-G solvation = -121.834530 kcal Electronic energy + Delta-G solvation = -20990.948600 eV Core-core repulsion = 17841.650300 eV Total energy + Delta-G solvation = -3149.298300 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.15707 -39.84421 -37.48399 -35.50641 -33.42608 -33.23335 -32.83878 -29.98025 -29.03362 -26.80425 -25.13340 -24.33729 -22.67091 -22.34259 -21.56604 -21.35719 -18.53444 -18.15922 -17.51506 -16.99114 -16.63788 -16.42208 -16.38901 -15.95244 -15.77461 -15.15828 -15.12132 -14.79956 -14.30051 -14.18909 -13.87810 -13.67107 -13.16855 -12.91478 -12.69469 -12.67518 -12.52939 -12.43676 -12.41245 -12.22398 -11.96542 -11.71289 -11.61999 -11.41737 -11.35264 -11.17018 -10.61326 -10.55277 -10.51564 -9.43054 -8.21062 -6.32450 1.39550 1.41359 1.52717 2.23306 2.40200 2.75019 3.12032 3.28691 3.57171 3.61246 3.90663 3.96206 3.97456 4.06976 4.09427 4.20924 4.24995 4.31458 4.37575 4.48907 4.54024 4.62191 4.65566 4.77026 4.77804 4.85169 4.88720 4.92992 4.96520 5.02892 5.04208 5.05959 5.22267 5.25701 5.49707 5.70580 5.83641 5.92310 5.94812 6.02545 6.14701 6.24667 6.84268 7.36875 8.91115 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039104 B = 0.003124 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.865742 B = 8960.433729 C = 9430.931561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.026 3.974 10 C -0.087 4.087 11 C 0.068 3.932 12 N -0.543 5.543 13 C 0.010 3.990 14 C 0.072 3.928 15 O -0.384 6.384 16 C 0.104 3.896 17 H 0.067 0.933 18 C 0.089 3.911 19 H 0.074 0.926 20 C -0.138 4.138 21 C -0.149 4.149 22 C 0.041 3.959 23 O -0.399 6.399 24 C 0.030 3.970 25 H 0.264 0.736 26 H -0.011 1.011 27 H -0.010 1.010 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.024 0.976 32 H 0.035 0.965 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.126 0.874 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.620 -25.289 0.249 26.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.580 4.580 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.124 4.124 11 C -0.060 4.060 12 N -0.268 5.268 13 C -0.118 4.118 14 C -0.005 4.005 15 O -0.303 6.303 16 C 0.046 3.954 17 H 0.085 0.915 18 C 0.031 3.969 19 H 0.092 0.908 20 C -0.176 4.176 21 C -0.186 4.186 22 C -0.035 4.035 23 O -0.319 6.319 24 C -0.098 4.098 25 H 0.073 0.927 26 H 0.008 0.992 27 H 0.009 0.991 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.054 0.946 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.144 0.856 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 7.709 -25.104 0.611 26.268 hybrid contribution -0.751 1.229 -0.531 1.535 sum 6.958 -23.875 0.080 24.869 Atomic orbital electron populations 1.70105 1.07882 1.27820 1.51714 1.26024 0.95795 1.03500 0.94673 0.85412 0.78654 0.78221 0.78561 1.19633 1.20703 1.18670 1.21683 0.93568 0.92274 1.50524 0.92108 1.18967 0.94394 0.93154 0.94664 1.21376 0.97964 0.92271 1.00837 1.22045 0.93530 0.90494 0.99937 1.62258 1.26817 1.02930 1.34750 1.22940 0.97422 1.01354 0.90094 1.22798 0.92904 0.81572 1.03207 1.87847 1.65788 1.35936 1.40748 1.22013 0.92245 0.93425 0.87706 0.91474 1.22728 0.93331 0.93573 0.87290 0.90763 1.23194 0.97834 0.94057 1.02467 1.23162 0.98874 0.98038 0.98561 1.23368 1.00920 0.81770 0.97431 1.88392 1.74697 1.32459 1.36366 1.22709 0.96214 0.89346 1.01506 0.92741 0.99231 0.99120 0.92848 0.92759 0.91578 0.95776 0.94645 0.89160 0.91785 0.85592 0.88633 0.90292 0.88070 0.89535 0.90542 0.90393 0.89955 0.94911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.14 13.29 21.45 0.28 -57.85 16 2 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 3 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.54 -31.71 9.11 25.60 0.23 -31.48 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.09 -3.75 5.09 30.60 0.16 -3.59 16 11 C 0.07 2.53 4.96 86.31 0.43 2.96 16 12 N -0.54 -17.36 4.73 -895.19 -4.23 -21.59 16 13 C 0.01 0.27 5.44 86.31 0.47 0.74 16 14 C 0.07 1.57 7.01 72.02 0.50 2.07 16 15 O -0.38 -9.14 10.19 -148.98 -1.52 -10.66 16 16 C 0.10 2.55 2.58 30.63 0.08 2.63 16 17 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 18 C 0.09 1.84 3.19 31.26 0.10 1.94 16 19 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 20 C -0.14 -2.06 6.32 32.09 0.20 -1.86 16 21 C -0.15 -1.66 7.02 31.89 0.22 -1.43 16 22 C 0.04 0.62 7.80 72.45 0.56 1.19 16 23 O -0.40 -9.13 10.60 -148.98 -1.58 -10.71 16 24 C 0.03 0.88 4.78 86.32 0.41 1.29 16 25 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 26 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 27 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 28 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.05 2.25 6.52 -2.39 -0.02 2.23 16 30 H 0.07 2.52 8.04 -2.39 -0.02 2.50 16 31 H 0.02 0.92 8.12 -2.39 -0.02 0.90 16 32 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.09 2.55 6.38 -2.39 -0.02 2.54 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 1.20 8.06 -2.38 -0.02 1.18 16 38 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 2.49 7.84 -2.38 -0.02 2.47 16 43 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -67.55 338.36 -0.09 -67.63 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.95 Total: 9.83 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: 3.98 Total: -23.65 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -3.95 Total: -79.44 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -3.10 Total: -21.36 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -67.55 -0.09 -67.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089152760.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.203 kcal (2) G-P(sol) polarization free energy of solvation -67.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds