Wall clock time and date at job start Mon Mar 30 2020 01:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00007 * 2 1 4 4 H 1.48497 * 109.47242 * 270.00339 * 3 2 1 5 5 H 1.48504 * 109.46765 * 30.00238 * 3 2 1 6 6 H 1.48496 * 109.47011 * 149.99947 * 3 2 1 7 7 C 1.37878 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00192 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99708 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46888 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47157 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.47393 * 179.97438 * 11 10 9 13 13 C 1.47013 * 110.99803 * 313.63691 * 12 11 10 14 14 C 1.53101 * 109.25501 * 177.60112 * 13 12 11 15 15 O 1.43017 * 109.29167 * 56.83115 * 14 13 12 16 16 C 1.43016 * 113.73339 * 301.39452 * 15 14 13 17 17 H 1.08997 * 109.50796 * 298.64185 * 16 15 14 18 18 C 1.53000 * 109.50666 * 178.55938 * 16 15 14 19 19 H 1.08999 * 110.67909 * 178.05269 * 18 16 15 20 20 C 1.54994 * 110.62123 * 55.08535 * 18 16 15 21 21 C 1.54807 * 102.09860 * 204.47570 * 20 18 16 22 22 C 1.54105 * 104.18504 * 20.88235 * 21 20 18 23 23 O 1.43746 * 107.42259 * 1.95340 * 22 21 20 24 24 C 1.47013 * 111.00280 * 189.99637 * 12 11 10 25 25 H 0.96994 * 120.00409 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47184 * 60.00413 * 9 7 2 27 27 H 1.09003 * 109.47596 * 300.00038 * 9 7 2 28 28 H 1.09000 * 109.46965 * 60.00164 * 10 9 7 29 29 H 1.08999 * 109.46836 * 299.99836 * 10 9 7 30 30 H 1.09000 * 109.47248 * 60.00093 * 11 10 9 31 31 H 1.09004 * 109.46899 * 300.00285 * 11 10 9 32 32 H 1.08991 * 109.50762 * 297.53733 * 13 12 11 33 33 H 1.09001 * 109.50761 * 57.67360 * 13 12 11 34 34 H 1.09001 * 109.50432 * 176.78322 * 14 13 12 35 35 H 1.08997 * 109.51072 * 296.87236 * 14 13 12 36 36 H 1.09007 * 110.90973 * 86.27428 * 20 18 16 37 37 H 1.09003 * 110.93565 * 322.69349 * 20 18 16 38 38 H 1.08996 * 110.48875 * 262.20504 * 21 20 18 39 39 H 1.09003 * 110.60294 * 139.60995 * 21 20 18 40 40 H 1.09002 * 109.88076 * 121.45430 * 22 21 20 41 41 H 1.08996 * 109.87584 * 242.45546 * 22 21 20 42 42 H 1.09006 * 109.50122 * 62.45978 * 24 12 11 43 43 H 1.08992 * 109.50591 * 302.33155 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5516 -2.6365 -0.0022 12 7 6.0413 -4.0214 -0.0027 13 6 5.3239 -4.8342 0.9903 14 6 5.8225 -6.2798 0.9146 15 8 7.2381 -6.3026 1.1170 16 6 7.9680 -5.5209 0.1676 17 1 7.7975 -5.9134 -0.8349 18 6 9.4614 -5.5844 0.4939 19 1 10.0398 -5.0222 -0.2392 20 6 9.9441 -7.0558 0.5578 21 6 11.1860 -6.9503 1.4760 22 6 10.9761 -5.6315 2.2450 23 8 9.7133 -5.0862 1.8276 24 6 7.4913 -4.0677 0.2355 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6804 0.8889 27 1 3.8746 -0.6799 -0.8911 28 1 3.6579 -3.1497 -0.8925 29 1 3.6586 -3.1509 0.8875 30 1 5.9149 -2.1234 0.8882 31 1 5.9149 -2.1219 -0.8918 32 1 5.5093 -4.4370 1.9881 33 1 4.2549 -4.8065 0.7795 34 1 5.3347 -6.8739 1.6874 35 1 5.5882 -6.6948 -0.0657 36 1 10.2220 -7.4175 -0.4323 37 1 9.1835 -7.6963 1.0043 38 1 12.0978 -6.9039 0.8807 39 1 11.2250 -7.7927 2.1668 40 1 10.9595 -5.8263 3.3174 41 1 11.7782 -4.9326 2.0079 42 1 7.7113 -3.6581 1.2215 43 1 8.0041 -3.4803 -0.5260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089152761.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:28 Heat of formation + Delta-G solvation = -94.571642 kcal Electronic energy + Delta-G solvation = -21180.210872 eV Core-core repulsion = 18032.094780 eV Total energy + Delta-G solvation = -3148.116092 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.21048 -38.80909 -36.22023 -33.52712 -32.45938 -32.16942 -31.43673 -28.94436 -27.86991 -25.50717 -24.03388 -22.87943 -21.74747 -21.16096 -20.29811 -19.70168 -17.10623 -16.86031 -16.52687 -15.89222 -15.84696 -15.09498 -14.91230 -14.60292 -14.44307 -14.16914 -13.84528 -13.60251 -13.48785 -12.72806 -12.60763 -12.02469 -11.95594 -11.82786 -11.68207 -11.62758 -11.36637 -11.24327 -10.93790 -10.84314 -10.65048 -10.49326 -9.88298 -9.87598 -9.73442 -9.68018 -9.45113 -9.13546 -8.52117 -8.15810 -6.02728 -4.00531 3.32023 3.39216 3.43375 3.55559 3.67818 3.91880 4.35181 4.46836 4.48334 4.63737 4.80891 4.93453 5.03413 5.09248 5.16033 5.19357 5.30561 5.31950 5.39086 5.44244 5.50513 5.53831 5.57620 5.69061 5.69299 5.80543 5.86687 5.93299 5.99625 6.08583 6.15212 6.52147 6.57673 6.67109 6.88214 7.11698 7.21665 7.23576 7.32432 7.46047 7.81577 8.56008 9.02302 9.59994 11.10828 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039501 B = 0.003351 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.676604 B = 8353.168496 C = 8793.657649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.104 4.104 11 C 0.054 3.946 12 N -0.538 5.538 13 C 0.012 3.988 14 C 0.064 3.936 15 O -0.374 6.374 16 C 0.103 3.897 17 H 0.077 0.923 18 C 0.083 3.917 19 H 0.082 0.918 20 C -0.146 4.146 21 C -0.155 4.155 22 C 0.046 3.954 23 O -0.362 6.362 24 C 0.025 3.975 25 H 0.263 0.737 26 H 0.014 0.986 27 H 0.012 0.988 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.684 -14.497 1.270 26.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.142 4.142 11 C -0.073 4.073 12 N -0.263 5.263 13 C -0.117 4.117 14 C -0.012 4.012 15 O -0.293 6.293 16 C 0.045 3.955 17 H 0.095 0.905 18 C 0.025 3.975 19 H 0.100 0.900 20 C -0.184 4.184 21 C -0.193 4.193 22 C -0.031 4.031 23 O -0.281 6.281 24 C -0.103 4.103 25 H 0.072 0.928 26 H 0.032 0.968 27 H 0.030 0.970 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 22.389 -14.535 1.084 26.715 hybrid contribution 0.527 1.395 0.480 1.567 sum 22.916 -13.139 1.565 26.462 Atomic orbital electron populations 1.69913 1.06298 1.26857 1.51312 1.25039 0.94733 0.99184 0.94606 0.86766 0.80342 0.83612 0.78493 1.20280 1.21423 1.19070 1.21136 0.89479 0.94447 1.50621 0.91051 1.19547 0.97173 0.92186 0.96164 1.21612 0.91035 0.99976 1.01563 1.22334 0.97748 0.86904 1.00355 1.62329 1.02781 1.12602 1.48547 1.22886 1.00589 0.93809 0.94373 1.22702 0.80883 0.95934 1.01725 1.87985 1.18011 1.69358 1.53912 1.22103 0.89509 0.91117 0.92771 0.90487 1.23246 0.94101 0.94002 0.86123 0.89982 1.23088 0.97736 0.97203 1.00329 1.22920 0.98700 0.98582 0.99087 1.23113 0.86630 0.93669 0.99703 1.89018 1.37665 1.70884 1.30555 1.22681 0.89615 0.96690 1.01348 0.92766 0.96820 0.97016 0.91927 0.92562 0.95168 0.90953 0.94020 0.88370 0.88543 0.92449 0.90383 0.89213 0.90895 0.90521 0.90055 0.92636 0.93177 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.29 13.96 55.43 0.77 -27.51 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -15.04 9.66 -34.44 -0.33 -15.38 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.10 -2.10 4.42 -26.73 -0.12 -2.22 16 11 C 0.05 0.92 5.28 -3.83 -0.02 0.90 16 12 N -0.54 -8.21 4.88 -234.31 -1.14 -9.35 16 13 C 0.01 0.17 4.94 -3.71 -0.02 0.15 16 14 C 0.06 0.79 7.01 37.21 0.26 1.05 16 15 O -0.37 -4.95 9.39 -42.70 -0.40 -5.36 16 16 C 0.10 1.22 2.76 -26.68 -0.07 1.15 16 17 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 18 C 0.08 0.85 3.18 -25.68 -0.08 0.77 16 19 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 20 C -0.15 -1.22 6.53 -24.73 -0.16 -1.38 16 21 C -0.16 -1.10 7.01 -25.20 -0.18 -1.28 16 22 C 0.05 0.40 7.69 37.73 0.29 0.69 16 23 O -0.36 -4.46 10.54 -42.70 -0.45 -4.91 16 24 C 0.03 0.34 4.82 -3.71 -0.02 0.32 16 25 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 26 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 27 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.06 1.13 6.27 -51.93 -0.33 0.80 16 30 H 0.03 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 1.47 6.05 -51.93 -0.31 1.16 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.87 7.23 -51.93 -0.38 0.49 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.05 0.77 7.67 -51.93 -0.40 0.37 16 43 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 332.03 15.07 5.00 5.00 Total: -1.00 -32.26 332.03 -9.23 -41.48 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -7.68 Total: -2.97 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -0.66 Total: -13.80 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: -0.37 Total: -36.86 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.85 Total: -10.27 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.26 -9.23 -41.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089152761.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.088 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds