Wall clock time and date at job start Mon Mar 30 2020 01:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00007 * 2 1 4 4 H 1.48497 * 109.47242 * 270.00339 * 3 2 1 5 5 H 1.48504 * 109.46765 * 30.00238 * 3 2 1 6 6 H 1.48496 * 109.47011 * 149.99947 * 3 2 1 7 7 C 1.37878 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00192 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99708 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46888 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47157 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.47393 * 179.97438 * 11 10 9 13 13 C 1.47013 * 110.99803 * 313.63691 * 12 11 10 14 14 C 1.53101 * 109.25501 * 177.60112 * 13 12 11 15 15 O 1.43017 * 109.29167 * 56.83115 * 14 13 12 16 16 C 1.43016 * 113.73339 * 301.39452 * 15 14 13 17 17 H 1.08997 * 109.50796 * 298.64185 * 16 15 14 18 18 C 1.53000 * 109.50666 * 178.55938 * 16 15 14 19 19 H 1.08999 * 110.67909 * 178.05269 * 18 16 15 20 20 C 1.54994 * 110.62123 * 55.08535 * 18 16 15 21 21 C 1.54807 * 102.09860 * 204.47570 * 20 18 16 22 22 C 1.54105 * 104.18504 * 20.88235 * 21 20 18 23 23 O 1.43746 * 107.42259 * 1.95340 * 22 21 20 24 24 C 1.47013 * 111.00280 * 189.99637 * 12 11 10 25 25 H 0.96994 * 120.00409 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47184 * 60.00413 * 9 7 2 27 27 H 1.09003 * 109.47596 * 300.00038 * 9 7 2 28 28 H 1.09000 * 109.46965 * 60.00164 * 10 9 7 29 29 H 1.08999 * 109.46836 * 299.99836 * 10 9 7 30 30 H 1.09000 * 109.47248 * 60.00093 * 11 10 9 31 31 H 1.09004 * 109.46899 * 300.00285 * 11 10 9 32 32 H 1.08991 * 109.50762 * 297.53733 * 13 12 11 33 33 H 1.09001 * 109.50761 * 57.67360 * 13 12 11 34 34 H 1.09001 * 109.50432 * 176.78322 * 14 13 12 35 35 H 1.08997 * 109.51072 * 296.87236 * 14 13 12 36 36 H 1.09007 * 110.90973 * 86.27428 * 20 18 16 37 37 H 1.09003 * 110.93565 * 322.69349 * 20 18 16 38 38 H 1.08996 * 110.48875 * 262.20504 * 21 20 18 39 39 H 1.09003 * 110.60294 * 139.60995 * 21 20 18 40 40 H 1.09002 * 109.88076 * 121.45430 * 22 21 20 41 41 H 1.08996 * 109.87584 * 242.45546 * 22 21 20 42 42 H 1.09006 * 109.50122 * 62.45978 * 24 12 11 43 43 H 1.08992 * 109.50591 * 302.33155 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5516 -2.6365 -0.0022 12 7 6.0413 -4.0214 -0.0027 13 6 5.3239 -4.8342 0.9903 14 6 5.8225 -6.2798 0.9146 15 8 7.2381 -6.3026 1.1170 16 6 7.9680 -5.5209 0.1676 17 1 7.7975 -5.9134 -0.8349 18 6 9.4614 -5.5844 0.4939 19 1 10.0398 -5.0222 -0.2392 20 6 9.9441 -7.0558 0.5578 21 6 11.1860 -6.9503 1.4760 22 6 10.9761 -5.6315 2.2450 23 8 9.7133 -5.0862 1.8276 24 6 7.4913 -4.0677 0.2355 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6804 0.8889 27 1 3.8746 -0.6799 -0.8911 28 1 3.6579 -3.1497 -0.8925 29 1 3.6586 -3.1509 0.8875 30 1 5.9149 -2.1234 0.8882 31 1 5.9149 -2.1219 -0.8918 32 1 5.5093 -4.4370 1.9881 33 1 4.2549 -4.8065 0.7795 34 1 5.3347 -6.8739 1.6874 35 1 5.5882 -6.6948 -0.0657 36 1 10.2220 -7.4175 -0.4323 37 1 9.1835 -7.6963 1.0043 38 1 12.0978 -6.9039 0.8807 39 1 11.2250 -7.7927 2.1668 40 1 10.9595 -5.8263 3.3174 41 1 11.7782 -4.9326 2.0079 42 1 7.7113 -3.6581 1.2215 43 1 8.0041 -3.4803 -0.5260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089152761.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:28 Heat of formation + Delta-G solvation = -116.897853 kcal Electronic energy + Delta-G solvation = -21181.179010 eV Core-core repulsion = 18032.094780 eV Total energy + Delta-G solvation = -3149.084229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.12530 -39.71778 -37.49523 -35.43361 -33.59259 -33.21811 -32.79661 -30.03678 -29.25764 -26.89192 -25.06820 -24.22826 -22.81093 -22.05659 -21.56227 -21.07634 -18.92074 -17.89651 -17.64041 -16.87767 -16.62915 -16.44527 -16.31816 -15.96140 -15.52303 -15.32422 -15.09894 -14.76121 -14.64156 -14.43048 -13.78094 -13.60268 -13.28872 -13.01421 -12.68734 -12.62725 -12.46513 -12.43516 -12.18831 -12.01832 -11.77349 -11.70451 -11.52142 -11.47996 -11.37943 -11.19837 -10.77539 -10.60062 -10.54119 -9.40405 -8.30682 -6.35015 1.34851 1.36863 1.48956 2.35254 2.67783 2.79809 2.92154 3.04516 3.60701 3.76247 3.96187 4.00985 4.05218 4.07044 4.17100 4.18349 4.25539 4.33438 4.36466 4.49003 4.55220 4.58599 4.63090 4.75657 4.81562 4.81916 4.88241 4.91404 4.95217 4.98664 5.01815 5.11837 5.14092 5.30733 5.45271 5.55488 5.63662 5.92254 5.96858 5.99792 6.22739 6.27747 6.72839 7.29650 8.86244 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039501 B = 0.003351 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.676604 B = 8353.168496 C = 8793.657649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.533 4.533 8 H 0.031 0.969 9 C -0.010 4.010 10 C -0.093 4.093 11 C 0.064 3.936 12 N -0.539 5.539 13 C 0.011 3.989 14 C 0.069 3.931 15 O -0.385 6.385 16 C 0.102 3.898 17 H 0.090 0.910 18 C 0.079 3.921 19 H 0.101 0.899 20 C -0.143 4.143 21 C -0.149 4.149 22 C 0.037 3.963 23 O -0.397 6.397 24 C 0.027 3.973 25 H 0.267 0.733 26 H 0.016 0.984 27 H 0.021 0.979 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.026 0.974 31 H 0.083 0.917 32 H 0.026 0.974 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.030 0.970 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.513 -14.489 0.600 29.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.172 1.172 7 C -0.571 4.571 8 H 0.050 0.950 9 C -0.047 4.047 10 C -0.131 4.131 11 C -0.064 4.064 12 N -0.264 5.264 13 C -0.118 4.118 14 C -0.008 4.008 15 O -0.304 6.304 16 C 0.044 3.956 17 H 0.108 0.892 18 C 0.022 3.978 19 H 0.119 0.881 20 C -0.180 4.180 21 C -0.186 4.186 22 C -0.039 4.039 23 O -0.317 6.317 24 C -0.101 4.101 25 H 0.075 0.925 26 H 0.034 0.966 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.101 0.899 32 H 0.045 0.955 33 H 0.107 0.893 34 H 0.130 0.870 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.048 0.952 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 25.240 -14.552 0.415 29.137 hybrid contribution -0.415 1.319 0.709 1.553 sum 24.825 -13.233 1.123 28.154 Atomic orbital electron populations 1.70067 1.08315 1.28208 1.52674 1.26049 0.95654 1.03627 0.94077 0.85618 0.79368 0.78084 0.79331 1.18866 1.20935 1.17227 1.21486 0.92100 0.93128 1.50402 0.95045 1.19487 0.93943 0.94869 0.96449 1.21419 0.93430 0.97291 1.00968 1.22134 0.95192 0.88365 1.00701 1.62349 1.03993 1.11302 1.48709 1.22903 1.00167 0.95329 0.93370 1.22735 0.80762 0.94383 1.02940 1.87986 1.18265 1.69516 1.54675 1.22257 0.90534 0.89625 0.93192 0.89200 1.23405 0.93040 0.95495 0.85875 0.88110 1.23066 0.97720 0.95617 1.01634 1.22916 0.98962 0.97755 0.98998 1.23303 0.85753 0.94832 1.00015 1.88981 1.39323 1.71701 1.31678 1.22741 0.88320 0.98346 1.00664 0.92458 0.96603 0.96030 0.92645 0.93182 0.95525 0.89875 0.95548 0.89341 0.86952 0.91456 0.88265 0.90888 0.88852 0.89950 0.90145 0.91449 0.95206 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.81 13.96 21.45 0.30 -60.51 16 2 C 0.00 0.15 5.47 84.66 0.46 0.61 16 3 Si 0.95 45.08 27.47 68.60 1.88 46.96 16 4 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 7 C -0.53 -31.57 9.66 25.60 0.25 -31.32 16 8 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 9 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 10 C -0.09 -3.76 4.42 30.60 0.14 -3.62 16 11 C 0.06 2.11 5.28 86.30 0.46 2.56 16 12 N -0.54 -15.90 4.88 -895.23 -4.36 -20.27 16 13 C 0.01 0.30 4.94 86.32 0.43 0.73 16 14 C 0.07 1.61 7.01 72.02 0.50 2.12 16 15 O -0.39 -9.76 9.39 -141.84 -1.33 -11.09 16 16 C 0.10 2.24 2.76 30.63 0.08 2.32 16 17 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 18 C 0.08 1.45 3.18 31.28 0.10 1.55 16 19 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 20 C -0.14 -2.03 6.53 31.89 0.21 -1.83 16 21 C -0.15 -1.73 7.01 31.58 0.22 -1.51 16 22 C 0.04 0.60 7.69 72.36 0.56 1.15 16 23 O -0.40 -9.33 10.54 -141.84 -1.49 -10.82 16 24 C 0.03 0.70 4.82 86.31 0.42 1.12 16 25 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 26 H 0.02 0.75 7.20 -2.39 -0.02 0.73 16 27 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 28 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.05 2.05 6.27 -2.39 -0.01 2.04 16 30 H 0.03 0.90 8.08 -2.39 -0.02 0.88 16 31 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 32 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 2.69 6.05 -2.39 -0.01 2.68 16 34 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.07 1.30 7.23 -2.39 -0.02 1.28 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.03 0.89 7.67 -2.38 -0.02 0.88 16 43 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -70.27 332.03 -0.17 -70.44 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.90 Total: 11.74 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 3.94 Total: -26.45 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -4.07 Total: -80.78 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -2.83 Total: -21.92 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.96 kcal Total: -70.27 -0.17 -70.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089152761.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.457 kcal (2) G-P(sol) polarization free energy of solvation -70.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds