Wall clock time and date at job start Mon Mar 30 2020 01:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.47009 * 111.00459 * 46.36163 * 12 11 10 14 14 C 1.53100 * 109.26251 * 182.39073 * 13 12 11 15 15 O 1.43014 * 109.25587 * 303.15422 * 14 13 12 16 16 C 1.43016 * 113.73910 * 58.66995 * 15 14 13 17 17 H 1.08995 * 109.50542 * 61.26198 * 16 15 14 18 18 C 1.53003 * 109.53897 * 181.37143 * 16 15 14 19 19 H 1.08997 * 110.33254 * 62.05343 * 18 16 15 20 20 C 1.54479 * 110.37327 * 299.80235 * 18 16 15 21 21 C 1.54509 * 104.06228 * 217.19072 * 20 18 16 22 22 C 1.54480 * 104.06400 * 0.02562 * 21 20 18 23 23 O 1.44424 * 110.37094 * 184.42276 * 18 16 15 24 24 C 1.47013 * 110.99794 * 169.99933 * 12 11 10 25 25 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 27 27 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 28 28 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 30 30 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 31 31 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 32 32 H 1.09000 * 109.50728 * 302.33198 * 13 12 11 33 33 H 1.09008 * 109.50611 * 62.45595 * 13 12 11 34 34 H 1.08997 * 109.50528 * 183.21655 * 14 13 12 35 35 H 1.09002 * 109.50034 * 63.08813 * 14 13 12 36 36 H 1.09000 * 110.51142 * 335.83701 * 20 18 16 37 37 H 1.08996 * 110.50877 * 98.41103 * 20 18 16 38 38 H 1.09008 * 110.50953 * 118.64537 * 21 20 18 39 39 H 1.08996 * 110.51421 * 241.35569 * 21 20 18 40 40 H 1.09001 * 110.37135 * 142.80486 * 22 21 20 41 41 H 1.08997 * 110.37087 * 265.03280 * 22 21 20 42 42 H 1.09005 * 109.51011 * 297.53877 * 24 12 11 43 43 H 1.09000 * 109.51189 * 57.62575 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 7 2.4346 -6.1037 0.0005 13 6 3.4962 -5.8888 0.9945 14 6 4.4989 -7.0434 0.9202 15 8 3.8099 -8.2802 1.1226 16 6 2.7696 -8.5220 0.1715 17 1 3.1964 -8.5702 -0.8303 18 6 2.0773 -9.8473 0.4962 19 1 1.6125 -9.8003 1.4810 20 6 3.0899 -11.0123 0.4345 21 6 2.2808 -12.1811 -0.1709 22 6 0.8753 -11.5839 -0.4039 23 8 1.0925 -10.1604 -0.5126 24 6 1.7494 -7.3824 0.2383 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5566 0.8902 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 0.8531 -5.0451 0.8897 31 1 0.8537 -5.0446 -0.8902 32 1 4.0069 -4.9491 0.7843 33 1 3.0584 -5.8506 1.9921 34 1 5.2565 -6.9179 1.6938 35 1 4.9759 -7.0485 -0.0599 36 1 3.9297 -10.7545 -0.2107 37 1 3.4415 -11.2660 1.4345 38 1 2.7208 -12.5013 -1.1155 39 1 2.2307 -13.0144 0.5300 40 1 0.4454 -11.9741 -1.3264 41 1 0.2238 -11.8059 0.4412 42 1 1.2837 -7.3682 1.2237 43 1 0.9845 -7.5327 -0.5236 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089152763.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:32 Heat of formation + Delta-G solvation = -98.291651 kcal Electronic energy + Delta-G solvation = -21018.626175 eV Core-core repulsion = 17870.348771 eV Total energy + Delta-G solvation = -3148.277404 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.21332 -38.92022 -36.21555 -33.51278 -32.41805 -32.17906 -31.23028 -28.91536 -27.52191 -25.28030 -24.11911 -22.88975 -21.96253 -21.10216 -20.52869 -19.63881 -16.97420 -16.71380 -16.26204 -16.12734 -15.65194 -15.08883 -14.99731 -14.66382 -14.39126 -14.18300 -13.95138 -13.67302 -13.42486 -12.69353 -12.28070 -12.01413 -11.81505 -11.72242 -11.62737 -11.43255 -11.32450 -11.18831 -10.91546 -10.83887 -10.56903 -10.44716 -10.38381 -10.02026 -9.67247 -9.58925 -9.32750 -9.02517 -8.33333 -8.10292 -5.98597 -4.00901 3.12274 3.32897 3.38887 3.42186 3.96414 4.17355 4.36584 4.47325 4.49500 4.66015 4.75774 4.95410 5.00698 5.10930 5.19222 5.22433 5.30946 5.37175 5.42675 5.42972 5.50149 5.56516 5.65580 5.71839 5.77708 5.83020 5.89462 5.95869 5.99189 6.06599 6.29169 6.56486 6.67388 6.75901 7.04897 7.09507 7.30932 7.33535 7.68801 7.83650 8.01488 8.44320 9.06163 9.63023 11.12882 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.043461 B = 0.003117 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.101829 B = 8981.862267 C = 9497.981347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.111 4.111 11 C 0.056 3.944 12 N -0.538 5.538 13 C 0.011 3.989 14 C 0.068 3.932 15 O -0.383 6.383 16 C 0.103 3.897 17 H 0.074 0.926 18 C 0.084 3.916 19 H 0.075 0.925 20 C -0.141 4.141 21 C -0.157 4.157 22 C 0.045 3.955 23 O -0.364 6.364 24 C 0.028 3.972 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.014 0.986 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.040 0.960 34 H 0.098 0.902 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.060 0.940 42 H 0.038 0.962 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.682 -23.986 1.436 24.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.149 4.149 11 C -0.071 4.071 12 N -0.263 5.263 13 C -0.118 4.118 14 C -0.009 4.009 15 O -0.302 6.302 16 C 0.045 3.955 17 H 0.092 0.908 18 C 0.026 3.974 19 H 0.093 0.907 20 C -0.179 4.179 21 C -0.195 4.195 22 C -0.032 4.032 23 O -0.283 6.283 24 C -0.101 4.101 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.032 0.968 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.059 0.941 34 H 0.116 0.884 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.078 0.922 42 H 0.056 0.944 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.687 -23.861 0.975 24.549 hybrid contribution -0.029 1.085 0.762 1.326 sum 5.657 -22.776 1.737 23.532 Atomic orbital electron populations 1.69972 1.06065 1.26567 1.50947 1.25034 0.94852 0.99268 0.95375 0.86593 0.79816 0.83475 0.78111 1.20641 1.21245 1.19900 1.21240 0.93005 0.91045 1.50443 0.92710 1.19065 0.93998 0.91293 0.97185 1.21787 0.99385 0.93047 1.00701 1.22319 0.93945 0.90306 1.00487 1.62334 1.13401 1.02275 1.48257 1.22896 0.94465 1.00025 0.94382 1.22717 0.93797 0.82445 1.01918 1.87841 1.49007 1.39504 1.53855 1.21907 0.88118 0.92370 0.93087 0.90837 1.22760 0.88772 0.93626 0.92258 0.90677 1.22861 0.98745 0.93974 1.02301 1.22981 0.96008 0.98649 1.01881 1.23411 0.96439 0.81171 1.02137 1.89123 1.60037 1.23074 1.56092 1.22708 0.96657 0.89747 1.00966 0.93021 0.96515 0.96790 0.93205 0.92512 0.95204 0.90814 0.88344 0.94146 0.88377 0.92272 0.90386 0.90206 0.90629 0.90561 0.88904 0.92199 0.94379 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.11 -2.34 4.42 -26.73 -0.12 -2.46 16 11 C 0.06 1.03 5.28 -3.82 -0.02 1.01 16 12 N -0.54 -8.64 4.88 -234.30 -1.14 -9.78 16 13 C 0.01 0.15 4.94 -3.71 -0.02 0.13 16 14 C 0.07 0.82 7.01 37.21 0.26 1.08 16 15 O -0.38 -4.96 10.15 -35.23 -0.36 -5.32 16 16 C 0.10 1.31 2.48 -26.68 -0.07 1.25 16 17 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 18 C 0.08 0.92 3.03 -25.95 -0.08 0.84 16 19 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 20 C -0.14 -1.24 6.34 -25.16 -0.16 -1.40 16 21 C -0.16 -1.11 7.09 -25.16 -0.18 -1.29 16 22 C 0.05 0.37 7.63 37.93 0.29 0.66 16 23 O -0.36 -4.25 10.98 -35.23 -0.39 -4.63 16 24 C 0.03 0.40 4.78 -3.71 -0.02 0.38 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 1.02 6.28 -51.93 -0.33 0.69 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.10 1.47 6.05 -51.93 -0.31 1.16 16 33 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.72 7.87 -51.93 -0.41 0.31 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 1.31 7.95 -51.93 -0.41 0.90 16 LS Contribution 337.09 15.07 5.08 5.08 Total: -1.00 -31.25 337.09 -9.51 -40.76 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -7.76 Total: -3.33 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -0.66 Total: -13.06 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.41 Total: -36.37 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.74 Total: -9.95 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.25 -9.51 -40.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089152763.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.534 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds